EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCJAG00000047815 (Gene tree)
Gene ID: -
Gene Symbol: TRUB1
Alias: PUS4
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Plus strand
Length: 45596 bases
Position: chrNTIC01004446.1:97136618-97182213
Accession: 16060
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000064263	TruB_N	PF01509.18	3.3e-50	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000071884	TRUB1-201	3814	-	ENSCJAP00000064263	351 (aa)	-	U3FN83

Gene Model

Click here to download ENSCJAG00000047815's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000047815's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCJAG00000047815	TRUB1	72	30.272	ENSCJAG00000020009	TRUB2	88	30.272

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000047815	TRUB1	100	96.296	ENSG00000165832	TRUB1	100	96.296	Homo_sapiens
ENSCJAG00000047815	TRUB1	70	68.571	ENSAPOG00000020565	trub1	89	68.293	Acanthochromis_polyacanthus
ENSCJAG00000047815	TRUB1	96	93.787	ENSAMEG00000014931	TRUB1	99	93.182	Ailuropoda_melanoleuca
ENSCJAG00000047815	TRUB1	81	57.746	ENSACIG00000003060	trub1	94	57.746	Amphilophus_citrinellus
ENSCJAG00000047815	TRUB1	70	68.571	ENSAOCG00000017188	trub1	89	68.293	Amphiprion_ocellaris
ENSCJAG00000047815	TRUB1	70	67.886	ENSAPEG00000015209	trub1	89	67.886	Amphiprion_percula
ENSCJAG00000047815	TRUB1	69	68.880	ENSATEG00000023291	trub1	86	68.880	Anabas_testudineus
ENSCJAG00000047815	TRUB1	78	75.636	ENSAPLG00000006808	TRUB1	99	75.636	Anas_platyrhynchos
ENSCJAG00000047815	TRUB1	77	71.004	ENSACAG00000009282	TRUB1	97	71.004	Anolis_carolinensis
ENSCJAG00000047815	TRUB1	100	98.860	ENSANAG00000022870	TRUB1	100	98.860	Aotus_nancymaae
ENSCJAG00000047815	TRUB1	72	67.063	ENSACLG00000000823	trub1	91	67.063	Astatotilapia_calliptera
ENSCJAG00000047815	TRUB1	77	65.314	ENSAMXG00000015845	trub1	90	65.314	Astyanax_mexicanus
ENSCJAG00000047815	TRUB1	97	92.690	ENSBTAG00000012955	TRUB1	99	91.738	Bos_taurus
ENSCJAG00000047815	TRUB1	99	93.714	ENSCAFG00000011688	TRUB1	99	93.714	Canis_familiaris
ENSCJAG00000047815	TRUB1	99	94.000	ENSCAFG00020013237	TRUB1	99	94.000	Canis_lupus_dingo
ENSCJAG00000047815	TRUB1	99	92.571	ENSCHIG00000020884	TRUB1	99	92.571	Capra_hircus
ENSCJAG00000047815	TRUB1	100	90.057	ENSTSYG00000000446	TRUB1	100	91.193	Carlito_syrichta
ENSCJAG00000047815	TRUB1	72	85.039	ENSCAPG00000017088	TRUB1	100	85.039	Cavia_aperea
ENSCJAG00000047815	TRUB1	70	85.772	ENSCPOG00000040236	-	100	85.772	Cavia_porcellus
ENSCJAG00000047815	TRUB1	71	80.723	ENSCPOG00000030129	-	86	79.116	Cavia_porcellus
ENSCJAG00000047815	TRUB1	100	98.860	ENSCCAG00000028842	TRUB1	100	98.860	Cebus_capucinus
ENSCJAG00000047815	TRUB1	100	97.151	ENSCATG00000033431	TRUB1	100	97.151	Cercocebus_atys
ENSCJAG00000047815	TRUB1	70	89.024	ENSCLAG00000008664	TRUB1	100	89.024	Chinchilla_lanigera
ENSCJAG00000047815	TRUB1	100	97.436	ENSCSAG00000004891	TRUB1	100	97.436	Chlorocebus_sabaeus
ENSCJAG00000047815	TRUB1	99	78.386	ENSCHOG00000011931	TRUB1	99	78.386	Choloepus_hoffmanni
ENSCJAG00000047815	TRUB1	77	79.412	ENSCPBG00000003051	TRUB1	94	79.412	Chrysemys_picta_bellii
ENSCJAG00000047815	TRUB1	100	97.436	ENSCANG00000029445	TRUB1	100	97.436	Colobus_angolensis_palliatus
ENSCJAG00000047815	TRUB1	80	80.000	ENSCGRG00001010322	-	79	79.932	Cricetulus_griseus_chok1gshd
ENSCJAG00000047815	TRUB1	82	79.791	ENSCGRG00001016772	-	90	79.798	Cricetulus_griseus_chok1gshd
ENSCJAG00000047815	TRUB1	80	89.286	ENSCGRG00000010806	Trub1	91	88.552	Cricetulus_griseus_crigri
ENSCJAG00000047815	TRUB1	73	62.500	ENSCSEG00000011261	trub1	97	56.811	Cynoglossus_semilaevis
ENSCJAG00000047815	TRUB1	74	65.891	ENSCVAG00000008791	trub1	79	65.891	Cyprinodon_variegatus
ENSCJAG00000047815	TRUB1	74	67.181	ENSDARG00000053805	trub1	89	67.181	Danio_rerio
ENSCJAG00000047815	TRUB1	97	87.647	ENSDNOG00000001069	TRUB1	99	86.286	Dasypus_novemcinctus
ENSCJAG00000047815	TRUB1	99	89.429	ENSDORG00000010431	Trub1	99	88.857	Dipodomys_ordii
ENSCJAG00000047815	TRUB1	81	76.471	ENSETEG00000009183	TRUB1	81	77.451	Echinops_telfairi
ENSCJAG00000047815	TRUB1	96	94.048	ENSEASG00005014739	TRUB1	99	93.429	Equus_asinus_asinus
ENSCJAG00000047815	TRUB1	96	94.048	ENSECAG00000007177	TRUB1	99	93.429	Equus_caballus
ENSCJAG00000047815	TRUB1	99	76.257	ENSEEUG00000013993	TRUB1	99	76.257	Erinaceus_europaeus
ENSCJAG00000047815	TRUB1	70	69.796	ENSELUG00000000502	trub1	86	69.796	Esox_lucius
ENSCJAG00000047815	TRUB1	95	93.731	ENSFCAG00000031927	TRUB1	99	92.550	Felis_catus
ENSCJAG00000047815	TRUB1	68	76.250	ENSFALG00000002232	TRUB1	92	76.250	Ficedula_albicollis
ENSCJAG00000047815	TRUB1	68	90.295	ENSFDAG00000008140	TRUB1	96	91.064	Fukomys_damarensis
ENSCJAG00000047815	TRUB1	70	66.531	ENSFHEG00000004016	trub1	84	66.531	Fundulus_heteroclitus
ENSCJAG00000047815	TRUB1	77	75.000	ENSGALG00000009091	TRUB1	97	74.057	Gallus_gallus
ENSCJAG00000047815	TRUB1	69	64.344	ENSGAFG00000009193	trub1	86	64.344	Gambusia_affinis
ENSCJAG00000047815	TRUB1	56	68.205	ENSGACG00000015387	trub1	96	68.205	Gasterosteus_aculeatus
ENSCJAG00000047815	TRUB1	88	73.786	ENSGAGG00000009758	TRUB1	81	78.169	Gopherus_agassizii
ENSCJAG00000047815	TRUB1	100	96.581	ENSGGOG00000004583	TRUB1	100	96.581	Gorilla_gorilla
ENSCJAG00000047815	TRUB1	72	67.063	ENSHBUG00000016787	trub1	91	67.063	Haplochromis_burtoni
ENSCJAG00000047815	TRUB1	99	87.143	ENSHGLG00000015314	TRUB1	99	87.143	Heterocephalus_glaber_female
ENSCJAG00000047815	TRUB1	70	86.585	ENSHGLG00100009183	TRUB1	100	84.553	Heterocephalus_glaber_male
ENSCJAG00000047815	TRUB1	70	68.163	ENSHCOG00000017877	trub1	89	68.163	Hippocampus_comes
ENSCJAG00000047815	TRUB1	79	65.580	ENSIPUG00000017559	trub1	97	65.580	Ictalurus_punctatus
ENSCJAG00000047815	TRUB1	89	93.949	ENSSTOG00000003641	TRUB1	99	88.571	Ictidomys_tridecemlineatus
ENSCJAG00000047815	TRUB1	85	92.642	ENSJJAG00000011800	Trub1	99	83.429	Jaculus_jaculus
ENSCJAG00000047815	TRUB1	72	65.759	ENSKMAG00000006232	trub1	92	65.759	Kryptolebias_marmoratus
ENSCJAG00000047815	TRUB1	70	67.886	ENSLBEG00000026722	trub1	92	63.910	Labrus_bergylta
ENSCJAG00000047815	TRUB1	79	73.188	ENSLACG00000014885	TRUB1	92	73.188	Latimeria_chalumnae
ENSCJAG00000047815	TRUB1	78	70.330	ENSLOCG00000012979	trub1	93	70.330	Lepisosteus_oculatus
ENSCJAG00000047815	TRUB1	100	79.330	ENSLAFG00000015452	TRUB1	100	80.168	Loxodonta_africana
ENSCJAG00000047815	TRUB1	100	97.151	ENSMFAG00000031767	TRUB1	100	97.151	Macaca_fascicularis
ENSCJAG00000047815	TRUB1	100	97.436	ENSMMUG00000001902	TRUB1	100	97.436	Macaca_mulatta
ENSCJAG00000047815	TRUB1	100	93.162	ENSMNEG00000044646	TRUB1	100	93.162	Macaca_nemestrina
ENSCJAG00000047815	TRUB1	100	97.151	ENSMLEG00000042655	TRUB1	100	97.151	Mandrillus_leucophaeus
ENSCJAG00000047815	TRUB1	72	67.063	ENSMZEG00005024095	trub1	91	67.063	Maylandia_zebra
ENSCJAG00000047815	TRUB1	77	74.265	ENSMGAG00000011135	TRUB1	93	74.265	Meleagris_gallopavo
ENSCJAG00000047815	TRUB1	85	85.906	ENSMAUG00000011101	Trub1	89	86.000	Mesocricetus_auratus
ENSCJAG00000047815	TRUB1	99	94.000	ENSMICG00000016324	TRUB1	99	94.000	Microcebus_murinus
ENSCJAG00000047815	TRUB1	91	83.692	ENSMOCG00000017759	Trub1	91	87.708	Microtus_ochrogaster
ENSCJAG00000047815	TRUB1	81	83.217	ENSMODG00000009676	TRUB1	81	81.419	Monodelphis_domestica
ENSCJAG00000047815	TRUB1	99	80.571	MGP_CAROLIEiJ_G0023100	Trub1	99	80.286	Mus_caroli
ENSCJAG00000047815	TRUB1	99	79.429	ENSMUSG00000025086	Trub1	99	79.143	Mus_musculus
ENSCJAG00000047815	TRUB1	99	81.143	MGP_PahariEiJ_G0014588	Trub1	99	80.857	Mus_pahari
ENSCJAG00000047815	TRUB1	99	79.714	MGP_SPRETEiJ_G0024021	Trub1	99	79.429	Mus_spretus
ENSCJAG00000047815	TRUB1	96	95.833	ENSMPUG00000003556	TRUB1	99	95.143	Mustela_putorius_furo
ENSCJAG00000047815	TRUB1	95	89.552	ENSMLUG00000017686	TRUB1	100	88.034	Myotis_lucifugus
ENSCJAG00000047815	TRUB1	99	86.119	ENSNGAG00000018682	Trub1	99	86.119	Nannospalax_galili
ENSCJAG00000047815	TRUB1	70	68.293	ENSNBRG00000023393	trub1	88	68.293	Neolamprologus_brichardi
ENSCJAG00000047815	TRUB1	100	96.866	ENSNLEG00000016345	TRUB1	100	96.866	Nomascus_leucogenys
ENSCJAG00000047815	TRUB1	57	91.045	ENSMEUG00000006603	TRUB1	78	88.152	Notamacropus_eugenii
ENSCJAG00000047815	TRUB1	86	86.047	ENSOPRG00000009371	TRUB1	88	86.047	Ochotona_princeps
ENSCJAG00000047815	TRUB1	99	84.571	ENSODEG00000010854	TRUB1	99	84.571	Octodon_degus
ENSCJAG00000047815	TRUB1	70	67.886	ENSONIG00000007249	trub1	89	67.886	Oreochromis_niloticus
ENSCJAG00000047815	TRUB1	78	80.292	ENSOANG00000001556	TRUB1	93	78.092	Ornithorhynchus_anatinus
ENSCJAG00000047815	TRUB1	99	83.853	ENSOCUG00000009456	TRUB1	99	83.853	Oryctolagus_cuniculus
ENSCJAG00000047815	TRUB1	69	69.295	ENSORLG00000029719	trub1	86	69.295	Oryzias_latipes
ENSCJAG00000047815	TRUB1	69	68.880	ENSORLG00020016767	trub1	85	68.880	Oryzias_latipes_hni
ENSCJAG00000047815	TRUB1	69	68.880	ENSORLG00015014728	trub1	86	68.880	Oryzias_latipes_hsok
ENSCJAG00000047815	TRUB1	74	66.409	ENSOMEG00000014556	trub1	90	66.537	Oryzias_melastigma
ENSCJAG00000047815	TRUB1	99	94.286	ENSOGAG00000015895	TRUB1	99	94.286	Otolemur_garnettii
ENSCJAG00000047815	TRUB1	84	94.371	ENSOARG00000015591	TRUB1	99	88.235	Ovis_aries
ENSCJAG00000047815	TRUB1	100	96.866	ENSPPAG00000043645	TRUB1	100	96.866	Pan_paniscus
ENSCJAG00000047815	TRUB1	95	93.134	ENSPPRG00000007096	TRUB1	99	91.977	Panthera_pardus
ENSCJAG00000047815	TRUB1	95	93.433	ENSPTIG00000006378	TRUB1	99	92.264	Panthera_tigris_altaica
ENSCJAG00000047815	TRUB1	100	96.866	ENSPTRG00000002964	TRUB1	100	96.866	Pan_troglodytes
ENSCJAG00000047815	TRUB1	100	97.151	ENSPANG00000020712	TRUB1	100	97.151	Papio_anubis
ENSCJAG00000047815	TRUB1	77	77.206	ENSPSIG00000012877	TRUB1	93	77.206	Pelodiscus_sinensis
ENSCJAG00000047815	TRUB1	70	66.122	ENSPMGG00000000075	trub1	88	66.122	Periophthalmus_magnuspinnatus
ENSCJAG00000047815	TRUB1	85	86.000	ENSPEMG00000011156	Trub1	88	86.000	Peromyscus_maniculatus_bairdii
ENSCJAG00000047815	TRUB1	81	82.517	ENSPCIG00000009729	TRUB1	79	81.507	Phascolarctos_cinereus
ENSCJAG00000047815	TRUB1	70	66.122	ENSPFOG00000009950	trub1	90	66.122	Poecilia_formosa
ENSCJAG00000047815	TRUB1	70	66.122	ENSPLAG00000013855	trub1	86	66.122	Poecilia_latipinna
ENSCJAG00000047815	TRUB1	70	66.122	ENSPMEG00000009064	trub1	88	66.122	Poecilia_mexicana
ENSCJAG00000047815	TRUB1	70	66.939	ENSPREG00000003343	trub1	88	66.939	Poecilia_reticulata
ENSCJAG00000047815	TRUB1	96	97.033	ENSPPYG00000002676	TRUB1	100	96.581	Pongo_abelii
ENSCJAG00000047815	TRUB1	100	75.921	ENSPCAG00000008427	TRUB1	100	75.637	Procavia_capensis
ENSCJAG00000047815	TRUB1	99	89.143	ENSPCOG00000024360	TRUB1	99	89.143	Propithecus_coquereli
ENSCJAG00000047815	TRUB1	75	92.453	ENSPVAG00000007575	TRUB1	100	92.453	Pteropus_vampyrus
ENSCJAG00000047815	TRUB1	72	67.063	ENSPNYG00000018614	trub1	91	67.063	Pundamilia_nyererei
ENSCJAG00000047815	TRUB1	74	59.231	ENSPNAG00000006881	trub1	88	58.088	Pygocentrus_nattereri
ENSCJAG00000047815	TRUB1	99	81.429	ENSRNOG00000017321	Trub1	99	80.857	Rattus_norvegicus
ENSCJAG00000047815	TRUB1	100	87.179	ENSRBIG00000033423	TRUB1	100	87.179	Rhinopithecus_bieti
ENSCJAG00000047815	TRUB1	100	96.866	ENSRROG00000033902	TRUB1	100	96.866	Rhinopithecus_roxellana
ENSCJAG00000047815	TRUB1	100	98.860	ENSSBOG00000024237	TRUB1	100	98.860	Saimiri_boliviensis_boliviensis
ENSCJAG00000047815	TRUB1	72	81.250	ENSSHAG00000009346	TRUB1	86	81.250	Sarcophilus_harrisii
ENSCJAG00000047815	TRUB1	69	69.959	ENSSFOG00015022124	trub1	83	69.959	Scleropages_formosus
ENSCJAG00000047815	TRUB1	70	68.699	ENSSMAG00000001020	trub1	88	68.699	Scophthalmus_maximus
ENSCJAG00000047815	TRUB1	68	69.167	ENSSDUG00000016414	trub1	88	69.106	Seriola_dumerili
ENSCJAG00000047815	TRUB1	68	69.583	ENSSLDG00000015486	trub1	88	69.512	Seriola_lalandi_dorsalis
ENSCJAG00000047815	TRUB1	80	77.500	ENSSPUG00000001642	TRUB1	96	77.500	Sphenodon_punctatus
ENSCJAG00000047815	TRUB1	74	66.923	ENSSPAG00000001217	trub1	92	66.923	Stegastes_partitus
ENSCJAG00000047815	TRUB1	99	88.571	ENSSSCG00000010653	TRUB1	99	88.571	Sus_scrofa
ENSCJAG00000047815	TRUB1	77	75.926	ENSTGUG00000010971	TRUB1	97	75.735	Taeniopygia_guttata
ENSCJAG00000047815	TRUB1	72	77.470	ENSTBEG00000002880	TRUB1	99	77.470	Tupaia_belangeri
ENSCJAG00000047815	TRUB1	72	92.032	ENSTTRG00000005767	TRUB1	100	90.189	Tursiops_truncatus
ENSCJAG00000047815	TRUB1	96	95.238	ENSUAMG00000024876	TRUB1	99	94.286	Ursus_americanus
ENSCJAG00000047815	TRUB1	84	97.627	ENSUMAG00000002411	TRUB1	99	90.000	Ursus_maritimus
ENSCJAG00000047815	TRUB1	99	92.571	ENSVPAG00000005507	TRUB1	99	92.571	Vicugna_pacos
ENSCJAG00000047815	TRUB1	99	92.286	ENSVVUG00000010085	TRUB1	83	92.000	Vulpes_vulpes
ENSCJAG00000047815	TRUB1	77	66.176	ENSXETG00000023828	trub1	98	66.176	Xenopus_tropicalis
ENSCJAG00000047815	TRUB1	69	65.021	ENSXCOG00000017847	trub1	86	65.021	Xiphophorus_couchianus
ENSCJAG00000047815	TRUB1	70	65.306	ENSXMAG00000014701	trub1	88	65.306	Xiphophorus_maculatus