EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCJAG00000048015 (Gene tree)
Gene ID: -
Gene Symbol: LSM1
Alias: CASM|YJL124C
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Minus strand
Length: 11802 bases
Position: chrNTIC01003335.1:35574011-35585812
Accession: 100388253
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000058034	LSM	PF01423.22	2.7e-15	1	1
ENSCJAP00000059122	LSM	PF01423.22	3.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000075821	LSM1-202	135	-	ENSCJAP00000059122	44 (aa)	-	A0A2R8PAB8
ENSCJAT00000084750	LSM1-201	402	-	ENSCJAP00000058034	133 (aa)	XP_002757005	F7B4D2

Gene Model

Click here to download ENSCJAG00000048015's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000048015's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCJAG00000048015	LSM1	65	34.091	ENSCJAG00000046406	LSM8	91	35.821

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000048015	LSM1	100	100.000	ENSG00000175324	LSM1	100	100.000	Homo_sapiens
ENSCJAG00000048015	LSM1	100	84.962	ENSAPOG00000010833	lsm1	100	84.962	Acanthochromis_polyacanthus
ENSCJAG00000048015	LSM1	100	99.248	ENSAMEG00000011141	LSM1	100	99.248	Ailuropoda_melanoleuca
ENSCJAG00000048015	LSM1	89	89.744	ENSACIG00000019593	lsm1	64	92.208	Amphilophus_citrinellus
ENSCJAG00000048015	LSM1	100	84.962	ENSAOCG00000017096	lsm1	100	84.962	Amphiprion_ocellaris
ENSCJAG00000048015	LSM1	100	84.962	ENSAOCG00000017997	-	100	84.962	Amphiprion_ocellaris
ENSCJAG00000048015	LSM1	100	84.962	ENSAPEG00000011669	lsm1	100	84.962	Amphiprion_percula
ENSCJAG00000048015	LSM1	100	83.459	ENSATEG00000022266	lsm1	100	83.459	Anabas_testudineus
ENSCJAG00000048015	LSM1	100	100.000	ENSANAG00000027785	LSM1	100	100.000	Aotus_nancymaae
ENSCJAG00000048015	LSM1	100	83.459	ENSACLG00000011400	lsm1	100	83.459	Astatotilapia_calliptera
ENSCJAG00000048015	LSM1	100	85.714	ENSAMXG00000005441	lsm1	100	85.714	Astyanax_mexicanus
ENSCJAG00000048015	LSM1	100	100.000	ENSBTAG00000001612	LSM1	100	100.000	Bos_taurus
ENSCJAG00000048015	LSM1	84	72.973	WBGene00003076	lsm-1	73	58.065	Caenorhabditis_elegans
ENSCJAG00000048015	LSM1	100	99.248	ENSCAFG00000006113	LSM1	100	99.248	Canis_familiaris
ENSCJAG00000048015	LSM1	100	99.248	ENSCAFG00020001822	LSM1	100	99.248	Canis_lupus_dingo
ENSCJAG00000048015	LSM1	100	99.248	ENSCHIG00000013194	LSM1	100	99.248	Capra_hircus
ENSCJAG00000048015	LSM1	100	99.248	ENSTSYG00000010394	LSM1	100	99.248	Carlito_syrichta
ENSCJAG00000048015	LSM1	100	99.248	ENSCPOG00000032671	LSM1	100	99.248	Cavia_porcellus
ENSCJAG00000048015	LSM1	100	100.000	ENSCCAG00000037171	LSM1	100	100.000	Cebus_capucinus
ENSCJAG00000048015	LSM1	100	99.248	ENSCATG00000020377	LSM1	100	99.248	Cercocebus_atys
ENSCJAG00000048015	LSM1	100	97.744	ENSCLAG00000001137	LSM1	100	97.744	Chinchilla_lanigera
ENSCJAG00000048015	LSM1	100	99.248	ENSCSAG00000015485	LSM1	100	99.248	Chlorocebus_sabaeus
ENSCJAG00000048015	LSM1	100	98.496	ENSCHOG00000006030	LSM1	100	98.496	Choloepus_hoffmanni
ENSCJAG00000048015	LSM1	95	88.189	ENSCPBG00000006569	LSM1	86	88.189	Chrysemys_picta_bellii
ENSCJAG00000048015	LSM1	89	82.051	ENSCING00000013536	-	92	71.311	Ciona_intestinalis
ENSCJAG00000048015	LSM1	100	100.000	ENSCANG00000019173	LSM1	100	100.000	Colobus_angolensis_palliatus
ENSCJAG00000048015	LSM1	100	98.496	ENSCGRG00001024560	-	100	98.496	Cricetulus_griseus_chok1gshd
ENSCJAG00000048015	LSM1	70	93.548	ENSCGRG00001002259	-	97	81.982	Cricetulus_griseus_chok1gshd
ENSCJAG00000048015	LSM1	100	98.496	ENSCGRG00000006554	-	100	98.496	Cricetulus_griseus_crigri
ENSCJAG00000048015	LSM1	70	93.548	ENSCGRG00000013603	-	97	81.982	Cricetulus_griseus_crigri
ENSCJAG00000048015	LSM1	100	81.955	ENSCSEG00000008319	lsm1	92	81.955	Cynoglossus_semilaevis
ENSCJAG00000048015	LSM1	100	82.707	ENSCSEG00000010570	lsm1	92	82.707	Cynoglossus_semilaevis
ENSCJAG00000048015	LSM1	100	82.707	ENSCVAG00000003871	lsm1	100	82.707	Cyprinodon_variegatus
ENSCJAG00000048015	LSM1	100	84.962	ENSDARG00000043177	lsm1	100	84.962	Danio_rerio
ENSCJAG00000048015	LSM1	89	79.832	ENSDNOG00000046620	-	100	79.832	Dasypus_novemcinctus
ENSCJAG00000048015	LSM1	100	93.233	ENSDNOG00000030989	-	100	93.233	Dasypus_novemcinctus
ENSCJAG00000048015	LSM1	100	99.248	ENSDNOG00000046387	-	100	99.248	Dasypus_novemcinctus
ENSCJAG00000048015	LSM1	100	98.496	ENSDNOG00000032911	-	100	98.496	Dasypus_novemcinctus
ENSCJAG00000048015	LSM1	100	99.248	ENSDORG00000028172	Lsm1	100	99.248	Dipodomys_ordii
ENSCJAG00000048015	LSM1	93	63.710	FBgn0261067	LSm1	91	63.710	Drosophila_melanogaster
ENSCJAG00000048015	LSM1	100	97.744	ENSEASG00005016677	LSM1	100	97.744	Equus_asinus_asinus
ENSCJAG00000048015	LSM1	100	97.744	ENSECAG00000010461	LSM1	100	97.744	Equus_caballus
ENSCJAG00000048015	LSM1	89	97.436	ENSEEUG00000015181	LSM1	100	69.925	Erinaceus_europaeus
ENSCJAG00000048015	LSM1	100	85.714	ENSELUG00000002322	lsm1	100	85.714	Esox_lucius
ENSCJAG00000048015	LSM1	89	97.436	ENSELUG00000023374	lsm1	100	83.459	Esox_lucius
ENSCJAG00000048015	LSM1	100	100.000	ENSFCAG00000039335	LSM1	100	100.000	Felis_catus
ENSCJAG00000048015	LSM1	89	94.068	ENSFALG00000006723	LSM1	100	94.068	Ficedula_albicollis
ENSCJAG00000048015	LSM1	100	99.248	ENSFDAG00000007658	LSM1	100	99.248	Fukomys_damarensis
ENSCJAG00000048015	LSM1	100	82.707	ENSFHEG00000009556	lsm1	100	82.707	Fundulus_heteroclitus
ENSCJAG00000048015	LSM1	100	82.707	ENSGMOG00000016651	lsm1	98	82.707	Gadus_morhua
ENSCJAG00000048015	LSM1	100	92.481	ENSGALG00000003245	LSM1	100	92.481	Gallus_gallus
ENSCJAG00000048015	LSM1	100	82.707	ENSGAFG00000011355	lsm1	100	82.707	Gambusia_affinis
ENSCJAG00000048015	LSM1	100	83.459	ENSGACG00000011763	lsm1	98	83.459	Gasterosteus_aculeatus
ENSCJAG00000048015	LSM1	100	94.737	ENSGAGG00000024065	LSM1	100	94.737	Gopherus_agassizii
ENSCJAG00000048015	LSM1	100	100.000	ENSGGOG00000022658	LSM1	100	100.000	Gorilla_gorilla
ENSCJAG00000048015	LSM1	100	83.459	ENSHBUG00000010897	lsm1	100	83.459	Haplochromis_burtoni
ENSCJAG00000048015	LSM1	100	78.947	ENSHGLG00000017574	-	100	78.947	Heterocephalus_glaber_female
ENSCJAG00000048015	LSM1	100	99.248	ENSHGLG00000005711	LSM1	100	99.248	Heterocephalus_glaber_female
ENSCJAG00000048015	LSM1	100	78.947	ENSHGLG00100012152	-	100	78.947	Heterocephalus_glaber_male
ENSCJAG00000048015	LSM1	100	99.248	ENSHGLG00100017660	LSM1	100	99.248	Heterocephalus_glaber_male
ENSCJAG00000048015	LSM1	100	83.459	ENSHCOG00000017233	lsm1	100	83.459	Hippocampus_comes
ENSCJAG00000048015	LSM1	100	84.211	ENSIPUG00000002312	LSM1	100	84.211	Ictalurus_punctatus
ENSCJAG00000048015	LSM1	89	97.436	ENSSTOG00000026870	LSM1	94	100.000	Ictidomys_tridecemlineatus
ENSCJAG00000048015	LSM1	100	97.744	ENSJJAG00000014605	-	100	97.744	Jaculus_jaculus
ENSCJAG00000048015	LSM1	100	83.459	ENSKMAG00000003016	lsm1	100	83.459	Kryptolebias_marmoratus
ENSCJAG00000048015	LSM1	100	83.459	ENSLBEG00000022352	lsm1	100	83.459	Labrus_bergylta
ENSCJAG00000048015	LSM1	89	89.831	ENSLACG00000010947	LSM1	98	89.831	Latimeria_chalumnae
ENSCJAG00000048015	LSM1	100	93.985	ENSLOCG00000015149	lsm1	100	93.985	Lepisosteus_oculatus
ENSCJAG00000048015	LSM1	100	99.248	ENSLAFG00000003534	LSM1	100	99.248	Loxodonta_africana
ENSCJAG00000048015	LSM1	100	100.000	ENSMFAG00000032661	LSM1	100	100.000	Macaca_fascicularis
ENSCJAG00000048015	LSM1	100	100.000	ENSMLEG00000034535	LSM1	100	100.000	Mandrillus_leucophaeus
ENSCJAG00000048015	LSM1	100	83.459	ENSMAMG00000007464	lsm1	100	83.459	Mastacembelus_armatus
ENSCJAG00000048015	LSM1	100	83.459	ENSMZEG00005010321	lsm1	100	83.459	Maylandia_zebra
ENSCJAG00000048015	LSM1	100	92.481	ENSMGAG00000002125	LSM1	100	92.481	Meleagris_gallopavo
ENSCJAG00000048015	LSM1	100	100.000	ENSMICG00000030726	LSM1	100	100.000	Microcebus_murinus
ENSCJAG00000048015	LSM1	100	98.496	ENSMOCG00000022817	Lsm1	100	98.496	Microtus_ochrogaster
ENSCJAG00000048015	LSM1	100	84.211	ENSMMOG00000015466	lsm1	100	84.211	Mola_mola
ENSCJAG00000048015	LSM1	100	96.992	ENSMODG00000010732	-	100	96.992	Monodelphis_domestica
ENSCJAG00000048015	LSM1	89	89.744	ENSMALG00000001478	lsm1	82	92.208	Monopterus_albus
ENSCJAG00000048015	LSM1	100	96.992	MGP_CAROLIEiJ_G0030930	Lsm1	100	96.992	Mus_caroli
ENSCJAG00000048015	LSM1	100	96.992	ENSMUSG00000037296	Lsm1	100	96.992	Mus_musculus
ENSCJAG00000048015	LSM1	100	96.992	MGP_PahariEiJ_G0021400	Lsm1	100	96.992	Mus_pahari
ENSCJAG00000048015	LSM1	100	96.992	MGP_SPRETEiJ_G0032049	Lsm1	100	96.992	Mus_spretus
ENSCJAG00000048015	LSM1	100	98.496	ENSMPUG00000009883	LSM1	100	98.496	Mustela_putorius_furo
ENSCJAG00000048015	LSM1	100	98.496	ENSMLUG00000003734	LSM1	100	98.496	Myotis_lucifugus
ENSCJAG00000048015	LSM1	100	98.496	ENSNGAG00000003753	Lsm1	100	98.496	Nannospalax_galili
ENSCJAG00000048015	LSM1	89	89.744	ENSNBRG00000017370	lsm1	66	92.208	Neolamprologus_brichardi
ENSCJAG00000048015	LSM1	100	100.000	ENSNLEG00000029390	LSM1	100	100.000	Nomascus_leucogenys
ENSCJAG00000048015	LSM1	100	96.992	ENSMEUG00000014077	LSM1	100	96.992	Notamacropus_eugenii
ENSCJAG00000048015	LSM1	88	94.872	ENSOPRG00000000333	LSM1	100	94.872	Ochotona_princeps
ENSCJAG00000048015	LSM1	100	99.248	ENSODEG00000004834	LSM1	100	99.248	Octodon_degus
ENSCJAG00000048015	LSM1	100	83.459	ENSONIG00000010782	lsm1	100	83.459	Oreochromis_niloticus
ENSCJAG00000048015	LSM1	100	96.241	ENSOANG00000003256	LSM1	100	96.241	Ornithorhynchus_anatinus
ENSCJAG00000048015	LSM1	100	99.248	ENSOCUG00000015399	LSM1	100	99.248	Oryctolagus_cuniculus
ENSCJAG00000048015	LSM1	100	84.962	ENSORLG00000030288	lsm1	100	84.962	Oryzias_latipes
ENSCJAG00000048015	LSM1	100	83.459	ENSORLG00020006213	-	86	83.459	Oryzias_latipes_hni
ENSCJAG00000048015	LSM1	100	84.962	ENSORLG00020003941	lsm1	100	84.962	Oryzias_latipes_hni
ENSCJAG00000048015	LSM1	100	84.962	ENSORLG00015018350	lsm1	100	84.962	Oryzias_latipes_hsok
ENSCJAG00000048015	LSM1	100	83.459	ENSOMEG00000012454	lsm1	100	83.459	Oryzias_melastigma
ENSCJAG00000048015	LSM1	100	99.248	ENSOGAG00000015161	LSM1	100	99.248	Otolemur_garnettii
ENSCJAG00000048015	LSM1	100	99.248	ENSOARG00000001317	LSM1	100	99.248	Ovis_aries
ENSCJAG00000048015	LSM1	100	100.000	ENSPPAG00000032279	LSM1	100	100.000	Pan_paniscus
ENSCJAG00000048015	LSM1	100	100.000	ENSPPRG00000014172	-	100	100.000	Panthera_pardus
ENSCJAG00000048015	LSM1	100	100.000	ENSPTIG00000010289	LSM1	100	100.000	Panthera_tigris_altaica
ENSCJAG00000048015	LSM1	100	100.000	ENSPTRG00000020169	LSM1	100	100.000	Pan_troglodytes
ENSCJAG00000048015	LSM1	100	100.000	ENSPANG00000008814	LSM1	100	100.000	Papio_anubis
ENSCJAG00000048015	LSM1	100	81.955	ENSPKIG00000019409	LSM1	99	81.955	Paramormyrops_kingsleyae
ENSCJAG00000048015	LSM1	100	89.474	ENSPKIG00000001839	lsm1	100	89.474	Paramormyrops_kingsleyae
ENSCJAG00000048015	LSM1	98	88.462	ENSPSIG00000012563	LSM1	99	88.462	Pelodiscus_sinensis
ENSCJAG00000048015	LSM1	89	89.744	ENSPMGG00000022999	lsm1	73	92.208	Periophthalmus_magnuspinnatus
ENSCJAG00000048015	LSM1	85	81.416	ENSPMAG00000002671	lsm1	100	81.416	Petromyzon_marinus
ENSCJAG00000048015	LSM1	100	95.489	ENSPCIG00000008880	LSM1	100	95.489	Phascolarctos_cinereus
ENSCJAG00000048015	LSM1	100	82.707	ENSPFOG00000016029	lsm1	100	82.707	Poecilia_formosa
ENSCJAG00000048015	LSM1	100	82.707	ENSPLAG00000007879	lsm1	100	82.707	Poecilia_latipinna
ENSCJAG00000048015	LSM1	100	82.707	ENSPMEG00000023550	lsm1	100	82.707	Poecilia_mexicana
ENSCJAG00000048015	LSM1	100	82.707	ENSPREG00000009574	lsm1	100	82.707	Poecilia_reticulata
ENSCJAG00000048015	LSM1	100	99.248	ENSPPYG00000018521	LSM1	100	99.248	Pongo_abelii
ENSCJAG00000048015	LSM1	100	100.000	ENSPCOG00000020901	-	100	100.000	Propithecus_coquereli
ENSCJAG00000048015	LSM1	100	99.248	ENSPVAG00000006016	LSM1	100	99.248	Pteropus_vampyrus
ENSCJAG00000048015	LSM1	100	83.459	ENSPNYG00000018067	lsm1	100	83.459	Pundamilia_nyererei
ENSCJAG00000048015	LSM1	100	84.962	ENSPNAG00000013707	lsm1	100	84.962	Pygocentrus_nattereri
ENSCJAG00000048015	LSM1	100	96.992	ENSRNOG00000015375	Lsm1	100	96.992	Rattus_norvegicus
ENSCJAG00000048015	LSM1	100	100.000	ENSRBIG00000027449	LSM1	100	100.000	Rhinopithecus_bieti
ENSCJAG00000048015	LSM1	100	100.000	ENSRROG00000036074	LSM1	100	100.000	Rhinopithecus_roxellana
ENSCJAG00000048015	LSM1	100	96.992	ENSSHAG00000017260	LSM1	100	96.992	Sarcophilus_harrisii
ENSCJAG00000048015	LSM1	100	90.977	ENSSFOG00015019528	lsm1	100	90.977	Scleropages_formosus
ENSCJAG00000048015	LSM1	100	83.459	ENSSMAG00000004930	lsm1	100	83.459	Scophthalmus_maximus
ENSCJAG00000048015	LSM1	100	83.459	ENSSDUG00000021823	lsm1	100	83.459	Seriola_dumerili
ENSCJAG00000048015	LSM1	100	83.459	ENSSLDG00000012154	lsm1	100	83.459	Seriola_lalandi_dorsalis
ENSCJAG00000048015	LSM1	100	94.737	ENSSPUG00000014878	LSM1	100	94.737	Sphenodon_punctatus
ENSCJAG00000048015	LSM1	100	84.211	ENSSPAG00000020548	lsm1	100	84.211	Stegastes_partitus
ENSCJAG00000048015	LSM1	100	97.744	ENSSSCG00000039058	LSM1	100	97.744	Sus_scrofa
ENSCJAG00000048015	LSM1	100	93.985	ENSTGUG00000004793	LSM1	100	93.985	Taeniopygia_guttata
ENSCJAG00000048015	LSM1	100	85.714	ENSTRUG00000025239	lsm1	100	85.714	Takifugu_rubripes
ENSCJAG00000048015	LSM1	100	85.714	ENSTNIG00000004055	lsm1	100	85.714	Tetraodon_nigroviridis
ENSCJAG00000048015	LSM1	88	96.581	ENSTBEG00000015884	LSM1	100	96.581	Tupaia_belangeri
ENSCJAG00000048015	LSM1	100	99.248	ENSTTRG00000004482	LSM1	100	99.248	Tursiops_truncatus
ENSCJAG00000048015	LSM1	100	99.248	ENSUAMG00000004103	LSM1	100	99.248	Ursus_americanus
ENSCJAG00000048015	LSM1	100	99.248	ENSUMAG00000009132	LSM1	100	99.248	Ursus_maritimus
ENSCJAG00000048015	LSM1	89	94.872	ENSVPAG00000011593	LSM1	100	98.701	Vicugna_pacos
ENSCJAG00000048015	LSM1	100	99.248	ENSVVUG00000020191	LSM1	100	99.248	Vulpes_vulpes
ENSCJAG00000048015	LSM1	89	61.538	ENSVVUG00000014880	-	91	69.767	Vulpes_vulpes
ENSCJAG00000048015	LSM1	100	91.971	ENSXETG00000009004	lsm1	100	91.971	Xenopus_tropicalis
ENSCJAG00000048015	LSM1	100	81.955	ENSXCOG00000015631	lsm1	100	81.955	Xiphophorus_couchianus
ENSCJAG00000048015	LSM1	100	81.955	ENSXMAG00000026637	lsm1	100	81.955	Xiphophorus_maculatus