EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCLAG00000000072 (Gene tree)
Gene ID: 102004763
Gene Symbol: PTCD2
Alias: FLJ12598
Full Name: pentatricopeptide repeat domain 2
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Plus strand
Length: 31543 bases
Position: chrJH722035.1:1126639-1158181
Accession: 102004763
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000000049	MRP-S27	PF10037.9	5.4e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000000074	PTCD2-201	3882	XM_005413937	ENSCLAP00000000049	383 (aa)	XP_005413994	UPI00038EE86A

Gene Model

Click here to download ENSCLAG00000000072's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000000072's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000000072	PTCD2	100	74.674	ENSG00000049883	PTCD2	100	76.847	Homo_sapiens
ENSCLAG00000000072	PTCD2	91	46.264	ENSAPOG00000020682	ptcd2	91	46.264	Acanthochromis_polyacanthus
ENSCLAG00000000072	PTCD2	100	73.629	ENSAMEG00000007194	PTCD2	99	73.629	Ailuropoda_melanoleuca
ENSCLAG00000000072	PTCD2	90	41.547	ENSACIG00000002053	ptcd2	100	41.547	Amphilophus_citrinellus
ENSCLAG00000000072	PTCD2	91	45.690	ENSAOCG00000006616	ptcd2	89	45.690	Amphiprion_ocellaris
ENSCLAG00000000072	PTCD2	91	45.690	ENSAPEG00000022926	ptcd2	89	45.690	Amphiprion_percula
ENSCLAG00000000072	PTCD2	98	55.820	ENSACAG00000009747	PTCD2	97	55.820	Anolis_carolinensis
ENSCLAG00000000072	PTCD2	100	74.674	ENSANAG00000029353	PTCD2	99	74.674	Aotus_nancymaae
ENSCLAG00000000072	PTCD2	94	44.044	ENSACLG00000027742	ptcd2	91	44.044	Astatotilapia_calliptera
ENSCLAG00000000072	PTCD2	90	41.399	ENSAMXG00000029404	ptcd2	92	41.399	Astyanax_mexicanus
ENSCLAG00000000072	PTCD2	100	75.781	ENSBTAG00000014675	PTCD2	100	75.781	Bos_taurus
ENSCLAG00000000072	PTCD2	100	73.107	ENSCJAG00000016364	PTCD2	99	73.107	Callithrix_jacchus
ENSCLAG00000000072	PTCD2	100	71.802	ENSCAFG00000007982	PTCD2	90	71.802	Canis_familiaris
ENSCLAG00000000072	PTCD2	90	74.855	ENSCAFG00020019147	PTCD2	97	74.855	Canis_lupus_dingo
ENSCLAG00000000072	PTCD2	100	76.302	ENSCHIG00000017118	PTCD2	100	76.302	Capra_hircus
ENSCLAG00000000072	PTCD2	100	81.201	ENSCPOG00000040168	PTCD2	100	81.201	Cavia_porcellus
ENSCLAG00000000072	PTCD2	100	73.890	ENSCCAG00000029389	-	99	73.890	Cebus_capucinus
ENSCLAG00000000072	PTCD2	83	68.652	ENSCCAG00000021996	-	98	68.652	Cebus_capucinus
ENSCLAG00000000072	PTCD2	100	74.413	ENSCATG00000019069	PTCD2	100	74.413	Cercocebus_atys
ENSCLAG00000000072	PTCD2	100	74.413	ENSCSAG00000015623	PTCD2	100	74.413	Chlorocebus_sabaeus
ENSCLAG00000000072	PTCD2	90	58.621	ENSCHOG00000010634	PTCD2	100	58.621	Choloepus_hoffmanni
ENSCLAG00000000072	PTCD2	94	54.039	ENSCPBG00000000216	PTCD2	92	54.039	Chrysemys_picta_bellii
ENSCLAG00000000072	PTCD2	100	73.890	ENSCANG00000035636	PTCD2	99	73.890	Colobus_angolensis_palliatus
ENSCLAG00000000072	PTCD2	96	74.526	ENSCGRG00001015289	Ptcd2	81	74.526	Cricetulus_griseus_chok1gshd
ENSCLAG00000000072	PTCD2	96	74.526	ENSCGRG00000006193	Ptcd2	81	74.526	Cricetulus_griseus_crigri
ENSCLAG00000000072	PTCD2	91	44.540	ENSCVAG00000001285	ptcd2	89	44.540	Cyprinodon_variegatus
ENSCLAG00000000072	PTCD2	98	44.180	ENSDARG00000035391	ptcd2	98	44.180	Danio_rerio
ENSCLAG00000000072	PTCD2	100	71.279	ENSDNOG00000008719	PTCD2	100	71.279	Dasypus_novemcinctus
ENSCLAG00000000072	PTCD2	100	75.194	ENSDORG00000004921	Ptcd2	100	75.194	Dipodomys_ordii
ENSCLAG00000000072	PTCD2	100	64.844	ENSETEG00000016542	PTCD2	99	64.844	Echinops_telfairi
ENSCLAG00000000072	PTCD2	100	73.247	ENSEASG00005018038	PTCD2	100	73.247	Equus_asinus_asinus
ENSCLAG00000000072	PTCD2	100	73.506	ENSECAG00000007022	PTCD2	98	73.506	Equus_caballus
ENSCLAG00000000072	PTCD2	100	68.407	ENSEEUG00000014031	PTCD2	99	68.407	Erinaceus_europaeus
ENSCLAG00000000072	PTCD2	91	49.138	ENSELUG00000003584	ptcd2	91	49.138	Esox_lucius
ENSCLAG00000000072	PTCD2	100	66.580	ENSFCAG00000045432	PTCD2	82	66.580	Felis_catus
ENSCLAG00000000072	PTCD2	85	51.682	ENSFALG00000010299	PTCD2	99	51.682	Ficedula_albicollis
ENSCLAG00000000072	PTCD2	100	80.418	ENSFDAG00000018461	PTCD2	100	80.418	Fukomys_damarensis
ENSCLAG00000000072	PTCD2	91	49.288	ENSGMOG00000003637	ptcd2	91	49.288	Gadus_morhua
ENSCLAG00000000072	PTCD2	91	49.568	ENSGALG00000038260	PTCD2	100	47.396	Gallus_gallus
ENSCLAG00000000072	PTCD2	94	57.382	ENSGAGG00000021952	PTCD2	92	57.382	Gopherus_agassizii
ENSCLAG00000000072	PTCD2	100	74.674	ENSGGOG00000010695	PTCD2	99	74.674	Gorilla_gorilla
ENSCLAG00000000072	PTCD2	94	43.490	ENSHBUG00000009191	ptcd2	91	43.490	Haplochromis_burtoni
ENSCLAG00000000072	PTCD2	100	82.768	ENSHGLG00000001234	PTCD2	100	82.768	Heterocephalus_glaber_female
ENSCLAG00000000072	PTCD2	100	82.768	ENSHGLG00100015419	PTCD2	100	82.768	Heterocephalus_glaber_male
ENSCLAG00000000072	PTCD2	91	48.711	ENSHCOG00000001703	ptcd2	90	48.711	Hippocampus_comes
ENSCLAG00000000072	PTCD2	85	43.865	ENSIPUG00000006080	ptcd2	90	43.966	Ictalurus_punctatus
ENSCLAG00000000072	PTCD2	96	77.989	ENSSTOG00000006596	PTCD2	96	77.989	Ictidomys_tridecemlineatus
ENSCLAG00000000072	PTCD2	100	73.890	ENSJJAG00000024388	Ptcd2	100	73.890	Jaculus_jaculus
ENSCLAG00000000072	PTCD2	92	44.193	ENSKMAG00000009329	ptcd2	91	44.193	Kryptolebias_marmoratus
ENSCLAG00000000072	PTCD2	99	43.702	ENSLBEG00000024871	ptcd2	99	43.702	Labrus_bergylta
ENSCLAG00000000072	PTCD2	93	53.090	ENSLOCG00000011122	ptcd2	93	53.090	Lepisosteus_oculatus
ENSCLAG00000000072	PTCD2	81	72.347	ENSLAFG00000004115	PTCD2	100	72.347	Loxodonta_africana
ENSCLAG00000000072	PTCD2	100	74.151	ENSMFAG00000031516	PTCD2	99	74.151	Macaca_fascicularis
ENSCLAG00000000072	PTCD2	100	74.413	ENSMNEG00000007537	PTCD2	100	74.413	Macaca_nemestrina
ENSCLAG00000000072	PTCD2	100	74.674	ENSMLEG00000031093	PTCD2	99	74.674	Mandrillus_leucophaeus
ENSCLAG00000000072	PTCD2	91	48.276	ENSMAMG00000018529	ptcd2	91	48.276	Mastacembelus_armatus
ENSCLAG00000000072	PTCD2	94	44.044	ENSMZEG00005003625	ptcd2	91	44.044	Maylandia_zebra
ENSCLAG00000000072	PTCD2	91	50.287	ENSMGAG00000005033	PTCD2	100	50.287	Meleagris_gallopavo
ENSCLAG00000000072	PTCD2	97	58.491	ENSMAUG00000020253	Ptcd2	97	58.491	Mesocricetus_auratus
ENSCLAG00000000072	PTCD2	100	73.368	ENSMICG00000004535	PTCD2	99	73.368	Microcebus_murinus
ENSCLAG00000000072	PTCD2	97	75.202	ENSMOCG00000019985	Ptcd2	97	75.202	Microtus_ochrogaster
ENSCLAG00000000072	PTCD2	92	58.640	ENSMODG00000001695	PTCD2	92	58.640	Monodelphis_domestica
ENSCLAG00000000072	PTCD2	94	46.537	ENSMALG00000022372	ptcd2	92	46.537	Monopterus_albus
ENSCLAG00000000072	PTCD2	96	73.842	MGP_CAROLIEiJ_G0018829	Ptcd2	96	73.842	Mus_caroli
ENSCLAG00000000072	PTCD2	96	73.025	ENSMUSG00000021650	Ptcd2	96	73.025	Mus_musculus
ENSCLAG00000000072	PTCD2	97	75.202	MGP_PahariEiJ_G0015904	Ptcd2	97	75.202	Mus_pahari
ENSCLAG00000000072	PTCD2	96	73.569	MGP_SPRETEiJ_G0019711	Ptcd2	96	73.569	Mus_spretus
ENSCLAG00000000072	PTCD2	100	74.674	ENSMPUG00000014401	PTCD2	100	74.674	Mustela_putorius_furo
ENSCLAG00000000072	PTCD2	100	72.063	ENSMLUG00000007374	PTCD2	99	72.063	Myotis_lucifugus
ENSCLAG00000000072	PTCD2	100	73.890	ENSNGAG00000005027	Ptcd2	100	73.890	Nannospalax_galili
ENSCLAG00000000072	PTCD2	86	45.152	ENSNBRG00000000092	-	100	45.152	Neolamprologus_brichardi
ENSCLAG00000000072	PTCD2	94	44.321	ENSNBRG00000008174	ptcd2	92	44.321	Neolamprologus_brichardi
ENSCLAG00000000072	PTCD2	100	75.196	ENSNLEG00000004516	PTCD2	99	75.196	Nomascus_leucogenys
ENSCLAG00000000072	PTCD2	82	51.592	ENSMEUG00000014012	-	82	51.592	Notamacropus_eugenii
ENSCLAG00000000072	PTCD2	100	68.407	ENSOPRG00000007290	PTCD2	99	68.407	Ochotona_princeps
ENSCLAG00000000072	PTCD2	100	82.768	ENSODEG00000016417	PTCD2	100	82.768	Octodon_degus
ENSCLAG00000000072	PTCD2	79	44.518	ENSONIG00000011269	ptcd2	86	44.518	Oreochromis_niloticus
ENSCLAG00000000072	PTCD2	93	75.140	ENSOCUG00000007970	PTCD2	100	71.802	Oryctolagus_cuniculus
ENSCLAG00000000072	PTCD2	90	46.532	ENSORLG00000003851	ptcd2	88	46.532	Oryzias_latipes
ENSCLAG00000000072	PTCD2	90	45.665	ENSORLG00020009823	ptcd2	90	45.665	Oryzias_latipes_hni
ENSCLAG00000000072	PTCD2	90	46.532	ENSORLG00015016777	ptcd2	99	46.532	Oryzias_latipes_hsok
ENSCLAG00000000072	PTCD2	99	40.909	ENSOMEG00000012396	ptcd2	95	40.909	Oryzias_melastigma
ENSCLAG00000000072	PTCD2	100	70.496	ENSOGAG00000008390	PTCD2	99	70.496	Otolemur_garnettii
ENSCLAG00000000072	PTCD2	100	76.042	ENSOARG00000005087	PTCD2	99	76.042	Ovis_aries
ENSCLAG00000000072	PTCD2	100	74.674	ENSPPAG00000028480	PTCD2	99	74.674	Pan_paniscus
ENSCLAG00000000072	PTCD2	100	74.935	ENSPTRG00000016968	PTCD2	99	74.935	Pan_troglodytes
ENSCLAG00000000072	PTCD2	90	77.681	ENSPANG00000006611	PTCD2	89	77.681	Papio_anubis
ENSCLAG00000000072	PTCD2	93	47.207	ENSPKIG00000019896	ptcd2	93	47.207	Paramormyrops_kingsleyae
ENSCLAG00000000072	PTCD2	83	57.098	ENSPSIG00000014559	PTCD2	98	57.098	Pelodiscus_sinensis
ENSCLAG00000000072	PTCD2	97	73.727	ENSPEMG00000000884	Ptcd2	97	73.727	Peromyscus_maniculatus_bairdii
ENSCLAG00000000072	PTCD2	100	57.292	ENSPCIG00000029047	PTCD2	100	57.292	Phascolarctos_cinereus
ENSCLAG00000000072	PTCD2	87	42.985	ENSPLAG00000010456	ptcd2	92	42.659	Poecilia_latipinna
ENSCLAG00000000072	PTCD2	91	43.103	ENSPREG00000021797	ptcd2	88	43.103	Poecilia_reticulata
ENSCLAG00000000072	PTCD2	100	65.274	ENSPPYG00000015543	PTCD2	99	65.274	Pongo_abelii
ENSCLAG00000000072	PTCD2	81	62.783	ENSPCAG00000006806	PTCD2	98	62.783	Procavia_capensis
ENSCLAG00000000072	PTCD2	100	70.496	ENSPVAG00000010935	PTCD2	99	70.496	Pteropus_vampyrus
ENSCLAG00000000072	PTCD2	94	44.044	ENSPNYG00000003122	ptcd2	91	44.044	Pundamilia_nyererei
ENSCLAG00000000072	PTCD2	93	46.089	ENSPNAG00000021490	ptcd2	93	46.089	Pygocentrus_nattereri
ENSCLAG00000000072	PTCD2	95	75.890	ENSRNOG00000028403	Ptcd2	96	75.890	Rattus_norvegicus
ENSCLAG00000000072	PTCD2	100	69.191	ENSRBIG00000032929	PTCD2	99	69.191	Rhinopithecus_bieti
ENSCLAG00000000072	PTCD2	100	73.890	ENSRROG00000000080	PTCD2	100	73.890	Rhinopithecus_roxellana
ENSCLAG00000000072	PTCD2	100	73.368	ENSSBOG00000018911	PTCD2	100	73.368	Saimiri_boliviensis_boliviensis
ENSCLAG00000000072	PTCD2	96	58.696	ENSSHAG00000003833	PTCD2	95	58.696	Sarcophilus_harrisii
ENSCLAG00000000072	PTCD2	94	45.833	ENSSFOG00015015415	ptcd2	93	45.833	Scleropages_formosus
ENSCLAG00000000072	PTCD2	96	43.455	ENSSMAG00000010350	ptcd2	99	43.455	Scophthalmus_maximus
ENSCLAG00000000072	PTCD2	91	48.127	ENSSDUG00000008142	ptcd2	87	48.127	Seriola_dumerili
ENSCLAG00000000072	PTCD2	91	48.127	ENSSLDG00000015284	ptcd2	91	48.127	Seriola_lalandi_dorsalis
ENSCLAG00000000072	PTCD2	81	63.430	ENSSARG00000004983	PTCD2	99	63.430	Sorex_araneus
ENSCLAG00000000072	PTCD2	94	52.368	ENSSPUG00000000176	PTCD2	90	52.368	Sphenodon_punctatus
ENSCLAG00000000072	PTCD2	91	45.690	ENSSPAG00000008591	ptcd2	89	45.690	Stegastes_partitus
ENSCLAG00000000072	PTCD2	100	74.151	ENSSSCG00000016975	PTCD2	90	74.151	Sus_scrofa
ENSCLAG00000000072	PTCD2	90	51.884	ENSTGUG00000005705	PTCD2	99	51.884	Taeniopygia_guttata
ENSCLAG00000000072	PTCD2	100	70.496	ENSTBEG00000016559	PTCD2	99	70.496	Tupaia_belangeri
ENSCLAG00000000072	PTCD2	99	73.298	ENSTTRG00000011851	PTCD2	98	73.298	Tursiops_truncatus
ENSCLAG00000000072	PTCD2	100	74.413	ENSUAMG00000007583	PTCD2	90	74.413	Ursus_americanus
ENSCLAG00000000072	PTCD2	100	74.151	ENSUMAG00000007666	PTCD2	100	74.151	Ursus_maritimus
ENSCLAG00000000072	PTCD2	100	72.135	ENSVPAG00000009597	PTCD2	99	72.135	Vicugna_pacos
ENSCLAG00000000072	PTCD2	100	71.279	ENSVVUG00000007299	-	100	71.279	Vulpes_vulpes
ENSCLAG00000000072	PTCD2	99	50.390	ENSXETG00000031652	PTCD2	98	50.390	Xenopus_tropicalis
ENSCLAG00000000072	PTCD2	93	40.164	ENSXMAG00000005940	ptcd2	93	39.796	Xiphophorus_maculatus