EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCLAG00000000250 (Gene tree)
Gene ID: -
Gene Symbol: ZNF550
Alias: MGC41917
Full Name: zinc finger protein 550
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Plus strand
Length: 8682 bases
Position: chrJH722044.1:287814-296495
Accession: 28643
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000000282	zf-C2H2	PF00096.26	1.2e-39	1	8
ENSCLAP00000000282	zf-C2H2	PF00096.26	1.2e-39	2	8
ENSCLAP00000000282	zf-C2H2	PF00096.26	1.2e-39	3	8
ENSCLAP00000000282	zf-C2H2	PF00096.26	1.2e-39	4	8
ENSCLAP00000000282	zf-C2H2	PF00096.26	1.2e-39	5	8
ENSCLAP00000000282	zf-C2H2	PF00096.26	1.2e-39	6	8
ENSCLAP00000000282	zf-C2H2	PF00096.26	1.2e-39	7	8
ENSCLAP00000000282	zf-C2H2	PF00096.26	1.2e-39	8	8
ENSCLAP00000000282	zf-met	PF12874.7	8.5e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000000309	ZNF550-201	5850	-	ENSCLAP00000000282	390 (aa)	-	-

Gene Model

Click here to download ENSCLAG00000000250's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000000250's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCLAG00000000250	ZNF550	71	46.226	ENSCLAG00000007793	ZNF236	62	46.226
ENSCLAG00000000250	ZNF550	61	53.304	ENSCLAG00000003116	ZNF2	61	53.304
ENSCLAG00000000250	ZNF550	95	54.483	ENSCLAG00000003483	ZNF112	81	53.917
ENSCLAG00000000250	ZNF550	61	43.939	ENSCLAG00000008329	ZFP64	62	36.364
ENSCLAG00000000250	ZNF550	56	41.538	ENSCLAG00000014824	-	91	41.538
ENSCLAG00000000250	ZNF550	58	56.140	ENSCLAG00000000758	-	63	56.140
ENSCLAG00000000250	ZNF550	61	35.802	ENSCLAG00000010565	ZNF521	51	35.802
ENSCLAG00000000250	ZNF550	57	41.579	ENSCLAG00000006252	ZNF574	70	41.579
ENSCLAG00000000250	ZNF550	58	44.444	ENSCLAG00000001598	ZNF784	59	44.444
ENSCLAG00000000250	ZNF550	61	54.598	ENSCLAG00000010195	-	92	54.598
ENSCLAG00000000250	ZNF550	79	35.238	ENSCLAG00000011313	ZNF646	64	36.145
ENSCLAG00000000250	ZNF550	58	37.430	ENSCLAG00000017018	HIC2	61	30.864
ENSCLAG00000000250	ZNF550	57	38.318	ENSCLAG00000011797	SNAI2	50	38.318
ENSCLAG00000000250	ZNF550	61	54.299	ENSCLAG00000014648	-	77	54.299
ENSCLAG00000000250	ZNF550	67	53.881	ENSCLAG00000004223	ZFP1	91	53.881
ENSCLAG00000000250	ZNF550	66	43.216	ENSCLAG00000005392	PRDM5	83	43.216
ENSCLAG00000000250	ZNF550	69	41.606	ENSCLAG00000005915	GFI1	51	41.135
ENSCLAG00000000250	ZNF550	69	44.103	ENSCLAG00000006953	ZNF319	93	44.103
ENSCLAG00000000250	ZNF550	52	41.333	ENSCLAG00000016426	OVOL1	64	41.333
ENSCLAG00000000250	ZNF550	56	34.459	ENSCLAG00000003912	GTF3A	79	34.459
ENSCLAG00000000250	ZNF550	69	55.066	ENSCLAG00000001537	ZNF81	71	55.066
ENSCLAG00000000250	ZNF550	57	50.000	ENSCLAG00000011533	ZNF768	51	52.991
ENSCLAG00000000250	ZNF550	57	38.272	ENSCLAG00000002951	ZNF526	53	37.624
ENSCLAG00000000250	ZNF550	71	51.121	ENSCLAG00000001377	-	86	51.121
ENSCLAG00000000250	ZNF550	94	57.273	ENSCLAG00000012556	-	97	57.273
ENSCLAG00000000250	ZNF550	58	55.066	ENSCLAG00000003065	ZNF226	78	55.066

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000000250	ZNF550	95	68.800	ENSG00000251369	ZNF550	99	70.118	Homo_sapiens
ENSCLAG00000000250	ZNF550	95	68.449	ENSCATG00000020915	ZNF550	100	63.446	Cercocebus_atys
ENSCLAG00000000250	ZNF550	95	67.914	ENSCSAG00000001629	ZNF550	91	67.914	Chlorocebus_sabaeus
ENSCLAG00000000250	ZNF550	95	66.404	ENSCANG00000033735	ZNF550	100	63.708	Colobus_angolensis_palliatus
ENSCLAG00000000250	ZNF550	89	60.907	ENSDNOG00000033330	-	99	60.907	Dasypus_novemcinctus
ENSCLAG00000000250	ZNF550	94	60.574	ENSFCAG00000034766	ZNF550	89	61.671	Felis_catus
ENSCLAG00000000250	ZNF550	95	68.783	ENSGGOG00000014068	ZNF550	100	63.824	Gorilla_gorilla
ENSCLAG00000000250	ZNF550	95	80.593	ENSHGLG00000018048	ZNF550	88	80.593	Heterocephalus_glaber_female
ENSCLAG00000000250	ZNF550	95	68.533	ENSMFAG00000036005	ZNF550	100	63.542	Macaca_fascicularis
ENSCLAG00000000250	ZNF550	95	68.267	ENSMMUG00000006122	ZNF550	100	63.446	Macaca_mulatta
ENSCLAG00000000250	ZNF550	95	68.533	ENSMNEG00000041366	ZNF550	100	63.542	Macaca_nemestrina
ENSCLAG00000000250	ZNF550	95	68.449	ENSMLEG00000034688	ZNF550	100	63.446	Mandrillus_leucophaeus
ENSCLAG00000000250	ZNF550	95	69.786	ENSMICG00000007561	ZNF550	100	65.013	Microcebus_murinus
ENSCLAG00000000250	ZNF550	95	61.376	ENSPPRG00000013475	ZNF550	99	57.106	Panthera_pardus
ENSCLAG00000000250	ZNF550	95	57.860	ENSPTIG00000018007	ZNF550	71	57.860	Panthera_tigris_altaica
ENSCLAG00000000250	ZNF550	95	68.800	ENSPTRG00000011560	ZNF550	100	63.802	Pan_troglodytes
ENSCLAG00000000250	ZNF550	95	68.449	ENSPANG00000030602	ZNF550	100	63.446	Papio_anubis
ENSCLAG00000000250	ZNF550	95	70.321	ENSPCOG00000018751	ZNF550	100	65.013	Propithecus_coquereli
ENSCLAG00000000250	ZNF550	95	60.800	ENSPVAG00000000908	ZNF550	89	60.800	Pteropus_vampyrus
ENSCLAG00000000250	ZNF550	95	66.142	ENSRBIG00000017275	ZNF550	100	63.446	Rhinopithecus_bieti
ENSCLAG00000000250	ZNF550	95	66.142	ENSRROG00000040063	ZNF550	100	63.446	Rhinopithecus_roxellana
ENSCLAG00000000250	ZNF550	95	66.578	ENSTTRG00000000293	ZNF550	91	66.578	Tursiops_truncatus