EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCLAG00000000647 (Gene tree)
Gene ID: 102022323
Gene Symbol: PABPC5
Alias: PABP5
Full Name: poly(A) binding protein cytoplasmic 5
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Minus strand
Length: 2379 bases
Position: chrJH721985.1:2847458-2849836
Accession: 102022323
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000000831	RRM_5	PF13893.6	5e-12	1	2
ENSCLAP00000000831	RRM_5	PF13893.6	5e-12	2	2
ENSCLAP00000000831	RRM_1	PF00076.22	5.8e-79	1	4
ENSCLAP00000000831	RRM_1	PF00076.22	5.8e-79	2	4
ENSCLAP00000000831	RRM_1	PF00076.22	5.8e-79	3	4
ENSCLAP00000000831	RRM_1	PF00076.22	5.8e-79	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000000868	PABPC5-201	1840	XM_005409738	ENSCLAP00000000831	382 (aa)	XP_005409795	UPI00038EF2EA

Gene Model

Click here to download ENSCLAG00000000647's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000000647's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCLAG00000000647	PABPC5	67	36.986	ENSCLAG00000008344	CELF4	58	35.802
ENSCLAG00000000647	PABPC5	93	57.143	ENSCLAG00000017409	-	98	56.771
ENSCLAG00000000647	PABPC5	96	67.769	ENSCLAG00000011899	PABPC4	58	67.978
ENSCLAG00000000647	PABPC5	96	60.989	ENSCLAG00000017628	PABPC4L	97	60.955
ENSCLAG00000000647	PABPC5	95	59.167	ENSCLAG00000005298	PABPC1L	61	59.270
ENSCLAG00000000647	PABPC5	94	35.802	ENSCLAG00000003388	ELAVL2	86	35.802
ENSCLAG00000000647	PABPC5	95	65.574	ENSCLAG00000009676	PABPC1	55	65.574
ENSCLAG00000000647	PABPC5	93	57.143	ENSCLAG00000017412	-	98	56.771
ENSCLAG00000000647	PABPC5	70	35.616	ENSCLAG00000000586	CELF3	93	34.568

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000000647	PABPC5	99	95.801	ENSG00000174740	PABPC5	99	95.801	Homo_sapiens
ENSCLAG00000000647	PABPC5	99	95.276	ENSAMEG00000020114	PABPC5	100	95.276	Ailuropoda_melanoleuca
ENSCLAG00000000647	PABPC5	99	95.801	ENSANAG00000005063	PABPC5	99	95.801	Aotus_nancymaae
ENSCLAG00000000647	PABPC5	100	94.503	ENSBTAG00000019942	PABPC5	100	94.503	Bos_taurus
ENSCLAG00000000647	PABPC5	99	96.325	ENSCJAG00000003665	PABPC5	99	96.325	Callithrix_jacchus
ENSCLAG00000000647	PABPC5	100	95.026	ENSCAFG00000017452	PABPC5	100	95.026	Canis_familiaris
ENSCLAG00000000647	PABPC5	100	94.503	ENSCHIG00000019004	PABPC5	100	94.503	Capra_hircus
ENSCLAG00000000647	PABPC5	100	95.026	ENSTSYG00000036351	PABPC5	100	95.026	Carlito_syrichta
ENSCLAG00000000647	PABPC5	99	90.052	ENSCAPG00000010714	PABPC5	100	90.052	Cavia_aperea
ENSCLAG00000000647	PABPC5	100	94.764	ENSCPOG00000002555	PABPC5	100	94.764	Cavia_porcellus
ENSCLAG00000000647	PABPC5	99	95.801	ENSCCAG00000032154	PABPC5	99	95.801	Cebus_capucinus
ENSCLAG00000000647	PABPC5	99	95.801	ENSCATG00000043083	PABPC5	99	95.801	Cercocebus_atys
ENSCLAG00000000647	PABPC5	99	95.801	ENSCSAG00000000065	PABPC5	99	95.801	Chlorocebus_sabaeus
ENSCLAG00000000647	PABPC5	99	95.801	ENSCANG00000011473	PABPC5	99	95.801	Colobus_angolensis_palliatus
ENSCLAG00000000647	PABPC5	100	92.932	ENSCGRG00000018699	Pabpc5	100	92.932	Cricetulus_griseus_crigri
ENSCLAG00000000647	PABPC5	100	75.979	ENSETEG00000011832	PABPC5	100	75.979	Echinops_telfairi
ENSCLAG00000000647	PABPC5	100	95.550	ENSEASG00005014396	PABPC5	100	95.550	Equus_asinus_asinus
ENSCLAG00000000647	PABPC5	100	95.550	ENSECAG00000003452	PABPC5	100	95.550	Equus_caballus
ENSCLAG00000000647	PABPC5	100	95.026	ENSFCAG00000004998	PABPC5	100	95.026	Felis_catus
ENSCLAG00000000647	PABPC5	100	96.335	ENSFDAG00000000126	PABPC5	100	96.335	Fukomys_damarensis
ENSCLAG00000000647	PABPC5	99	95.801	ENSGGOG00000007622	PABPC5	99	95.801	Gorilla_gorilla
ENSCLAG00000000647	PABPC5	95	94.495	ENSJJAG00000011960	Pabpc5	100	94.495	Jaculus_jaculus
ENSCLAG00000000647	PABPC5	99	95.801	ENSMFAG00000024561	PABPC5	99	95.801	Macaca_fascicularis
ENSCLAG00000000647	PABPC5	99	95.801	ENSMMUG00000011562	PABPC5	99	95.801	Macaca_mulatta
ENSCLAG00000000647	PABPC5	99	95.801	ENSMNEG00000037604	PABPC5	99	95.801	Macaca_nemestrina
ENSCLAG00000000647	PABPC5	99	95.801	ENSMLEG00000028318	PABPC5	99	95.801	Mandrillus_leucophaeus
ENSCLAG00000000647	PABPC5	100	94.241	ENSMICG00000041706	PABPC5	100	94.241	Microcebus_murinus
ENSCLAG00000000647	PABPC5	100	93.717	ENSMOCG00000001554	Pabpc5	100	93.717	Microtus_ochrogaster
ENSCLAG00000000647	PABPC5	99	91.842	MGP_CAROLIEiJ_G0033367	Pabpc5	99	91.842	Mus_caroli
ENSCLAG00000000647	PABPC5	99	92.368	ENSMUSG00000034732	Pabpc5	99	92.368	Mus_musculus
ENSCLAG00000000647	PABPC5	100	92.670	MGP_PahariEiJ_G0031908	Pabpc5	100	92.670	Mus_pahari
ENSCLAG00000000647	PABPC5	99	92.368	MGP_SPRETEiJ_G0034533	Pabpc5	99	92.368	Mus_spretus
ENSCLAG00000000647	PABPC5	100	94.764	ENSMPUG00000018465	PABPC5	100	94.764	Mustela_putorius_furo
ENSCLAG00000000647	PABPC5	100	94.764	ENSMLUG00000008244	PABPC5	100	94.764	Myotis_lucifugus
ENSCLAG00000000647	PABPC5	95	93.578	ENSNGAG00000004371	Pabpc5	100	93.578	Nannospalax_galili
ENSCLAG00000000647	PABPC5	99	95.801	ENSNLEG00000035086	PABPC5	99	95.801	Nomascus_leucogenys
ENSCLAG00000000647	PABPC5	98	96.380	ENSOPRG00000000856	PABPC5	100	96.380	Ochotona_princeps
ENSCLAG00000000647	PABPC5	100	95.288	ENSOCUG00000010919	PABPC5	100	95.288	Oryctolagus_cuniculus
ENSCLAG00000000647	PABPC5	100	95.026	ENSOGAG00000006882	PABPC5	100	95.026	Otolemur_garnettii
ENSCLAG00000000647	PABPC5	100	94.764	ENSOARG00000010260	PABPC5	100	94.764	Ovis_aries
ENSCLAG00000000647	PABPC5	99	95.538	ENSPPAG00000007378	PABPC5	99	95.538	Pan_paniscus
ENSCLAG00000000647	PABPC5	100	95.026	ENSPPRG00000010742	PABPC5	100	95.026	Panthera_pardus
ENSCLAG00000000647	PABPC5	100	95.026	ENSPTIG00000001480	PABPC5	100	95.026	Panthera_tigris_altaica
ENSCLAG00000000647	PABPC5	99	95.801	ENSPTRG00000022078	PABPC5	99	95.801	Pan_troglodytes
ENSCLAG00000000647	PABPC5	99	95.801	ENSPANG00000018282	PABPC5	99	95.801	Papio_anubis
ENSCLAG00000000647	PABPC5	100	93.455	ENSPEMG00000000171	Pabpc5	100	93.455	Peromyscus_maniculatus_bairdii
ENSCLAG00000000647	PABPC5	99	95.801	ENSPPYG00000020526	PABPC5	99	95.801	Pongo_abelii
ENSCLAG00000000647	PABPC5	99	95.636	ENSPCAG00000015577	PABPC5	100	95.636	Procavia_capensis
ENSCLAG00000000647	PABPC5	100	95.026	ENSPCOG00000000676	PABPC5	100	95.026	Propithecus_coquereli
ENSCLAG00000000647	PABPC5	100	95.026	ENSPVAG00000006465	PABPC5	100	95.026	Pteropus_vampyrus
ENSCLAG00000000647	PABPC5	100	92.670	ENSRNOG00000003354	Pabpc5	100	92.670	Rattus_norvegicus
ENSCLAG00000000647	PABPC5	99	95.801	ENSRBIG00000011760	PABPC5	99	95.801	Rhinopithecus_bieti
ENSCLAG00000000647	PABPC5	99	95.801	ENSRROG00000036708	PABPC5	99	95.801	Rhinopithecus_roxellana
ENSCLAG00000000647	PABPC5	99	95.538	ENSSBOG00000008658	PABPC5	99	95.538	Saimiri_boliviensis_boliviensis
ENSCLAG00000000647	PABPC5	100	92.147	ENSSARG00000014012	PABPC5	100	92.147	Sorex_araneus
ENSCLAG00000000647	PABPC5	100	95.288	ENSSSCG00000040194	PABPC5	100	95.288	Sus_scrofa
ENSCLAG00000000647	PABPC5	100	96.335	ENSTBEG00000016482	PABPC5	100	96.335	Tupaia_belangeri
ENSCLAG00000000647	PABPC5	100	94.764	ENSUAMG00000013627	PABPC5	100	94.764	Ursus_americanus
ENSCLAG00000000647	PABPC5	100	94.503	ENSUMAG00000023934	PABPC5	100	94.503	Ursus_maritimus
ENSCLAG00000000647	PABPC5	100	94.764	ENSVPAG00000001063	PABPC5	100	94.764	Vicugna_pacos
ENSCLAG00000000647	PABPC5	100	95.026	ENSVVUG00000013172	PABPC5	100	95.026	Vulpes_vulpes