EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCLAG00000001137 (Gene tree)
Gene ID: 102019988
Gene Symbol: LSM1
Alias: CASM|YJL124C
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Minus strand
Length: 14916 bases
Position: chrJH721923.1:13773869-13788784
Accession: 102019988
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000001516	LSM	PF01423.22	1.8e-15	1	1
ENSCLAP00000001517	LSM	PF01423.22	1.8e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000001560	LSM1-202	2622	-	ENSCLAP00000001517	133 (aa)	-	UPI00038ED506
ENSCLAT00000001561	LSM1-203	66	-	ENSCLAP00000001518	21 (aa)	-	-
ENSCLAT00000001559	LSM1-201	5465	XM_005398435	ENSCLAP00000001516	133 (aa)	XP_005398492	UPI00038ED506

Gene Model

Click here to download ENSCLAG00000001137's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000001137's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCLAG00000001137	LSM1	65	34.091	ENSCLAG00000003726	LSM8	92	34.091

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000001137	LSM1	100	98.496	ENSG00000175324	LSM1	100	98.496	Homo_sapiens
ENSCLAG00000001137	LSM1	100	84.211	ENSAPOG00000010833	lsm1	100	84.211	Acanthochromis_polyacanthus
ENSCLAG00000001137	LSM1	100	98.496	ENSAMEG00000011141	LSM1	100	98.496	Ailuropoda_melanoleuca
ENSCLAG00000001137	LSM1	58	92.208	ENSACIG00000019593	lsm1	64	92.208	Amphilophus_citrinellus
ENSCLAG00000001137	LSM1	100	84.211	ENSAOCG00000017997	-	100	84.211	Amphiprion_ocellaris
ENSCLAG00000001137	LSM1	100	84.211	ENSAOCG00000017096	lsm1	100	84.211	Amphiprion_ocellaris
ENSCLAG00000001137	LSM1	100	84.211	ENSAPEG00000011669	lsm1	100	84.211	Amphiprion_percula
ENSCLAG00000001137	LSM1	100	82.707	ENSATEG00000022266	lsm1	100	82.707	Anabas_testudineus
ENSCLAG00000001137	LSM1	100	98.496	ENSANAG00000027785	LSM1	100	98.496	Aotus_nancymaae
ENSCLAG00000001137	LSM1	100	82.707	ENSACLG00000011400	lsm1	100	82.707	Astatotilapia_calliptera
ENSCLAG00000001137	LSM1	100	84.962	ENSAMXG00000005441	lsm1	100	84.962	Astyanax_mexicanus
ENSCLAG00000001137	LSM1	100	97.744	ENSBTAG00000001612	LSM1	100	97.744	Bos_taurus
ENSCLAG00000001137	LSM1	70	58.065	WBGene00003076	lsm-1	73	58.065	Caenorhabditis_elegans
ENSCLAG00000001137	LSM1	100	97.744	ENSCJAG00000048015	LSM1	100	97.744	Callithrix_jacchus
ENSCLAG00000001137	LSM1	100	98.496	ENSCAFG00000006113	LSM1	100	98.496	Canis_familiaris
ENSCLAG00000001137	LSM1	100	98.496	ENSCAFG00020001822	LSM1	100	98.496	Canis_lupus_dingo
ENSCLAG00000001137	LSM1	100	98.496	ENSCHIG00000013194	LSM1	100	98.496	Capra_hircus
ENSCLAG00000001137	LSM1	100	98.496	ENSTSYG00000010394	LSM1	100	98.496	Carlito_syrichta
ENSCLAG00000001137	LSM1	100	98.496	ENSCPOG00000032671	LSM1	100	98.496	Cavia_porcellus
ENSCLAG00000001137	LSM1	100	98.496	ENSCCAG00000037171	LSM1	100	98.496	Cebus_capucinus
ENSCLAG00000001137	LSM1	100	98.496	ENSCATG00000020377	LSM1	100	98.496	Cercocebus_atys
ENSCLAG00000001137	LSM1	100	98.496	ENSCSAG00000015485	LSM1	100	98.496	Chlorocebus_sabaeus
ENSCLAG00000001137	LSM1	100	97.744	ENSCHOG00000006030	LSM1	100	97.744	Choloepus_hoffmanni
ENSCLAG00000001137	LSM1	95	87.402	ENSCPBG00000006569	LSM1	86	87.402	Chrysemys_picta_bellii
ENSCLAG00000001137	LSM1	99	65.909	ENSCING00000013536	-	99	65.909	Ciona_intestinalis
ENSCLAG00000001137	LSM1	100	98.496	ENSCANG00000019173	LSM1	100	98.496	Colobus_angolensis_palliatus
ENSCLAG00000001137	LSM1	100	99.248	ENSCGRG00001024560	-	100	99.248	Cricetulus_griseus_chok1gshd
ENSCLAG00000001137	LSM1	80	81.982	ENSCGRG00001002259	-	97	81.982	Cricetulus_griseus_chok1gshd
ENSCLAG00000001137	LSM1	100	99.248	ENSCGRG00000006554	-	100	99.248	Cricetulus_griseus_crigri
ENSCLAG00000001137	LSM1	80	81.982	ENSCGRG00000013603	-	97	81.982	Cricetulus_griseus_crigri
ENSCLAG00000001137	LSM1	100	81.203	ENSCSEG00000008319	lsm1	92	81.203	Cynoglossus_semilaevis
ENSCLAG00000001137	LSM1	100	81.955	ENSCSEG00000010570	lsm1	92	81.955	Cynoglossus_semilaevis
ENSCLAG00000001137	LSM1	100	81.955	ENSCVAG00000003871	lsm1	100	81.955	Cyprinodon_variegatus
ENSCLAG00000001137	LSM1	100	85.714	ENSDARG00000043177	lsm1	100	85.714	Danio_rerio
ENSCLAG00000001137	LSM1	100	98.496	ENSDNOG00000046387	-	100	98.496	Dasypus_novemcinctus
ENSCLAG00000001137	LSM1	100	92.481	ENSDNOG00000030989	-	100	92.481	Dasypus_novemcinctus
ENSCLAG00000001137	LSM1	89	78.151	ENSDNOG00000046620	-	100	78.151	Dasypus_novemcinctus
ENSCLAG00000001137	LSM1	100	97.744	ENSDNOG00000032911	-	100	97.744	Dasypus_novemcinctus
ENSCLAG00000001137	LSM1	100	98.496	ENSDORG00000028172	Lsm1	100	98.496	Dipodomys_ordii
ENSCLAG00000001137	LSM1	93	65.323	FBgn0261067	LSm1	91	65.323	Drosophila_melanogaster
ENSCLAG00000001137	LSM1	100	98.496	ENSEASG00005016677	LSM1	100	98.496	Equus_asinus_asinus
ENSCLAG00000001137	LSM1	100	98.496	ENSECAG00000010461	LSM1	100	98.496	Equus_caballus
ENSCLAG00000001137	LSM1	100	69.173	ENSEEUG00000015181	LSM1	100	69.173	Erinaceus_europaeus
ENSCLAG00000001137	LSM1	100	84.211	ENSELUG00000023374	lsm1	100	84.211	Esox_lucius
ENSCLAG00000001137	LSM1	100	84.962	ENSELUG00000002322	lsm1	100	84.962	Esox_lucius
ENSCLAG00000001137	LSM1	100	98.496	ENSFCAG00000039335	LSM1	100	98.496	Felis_catus
ENSCLAG00000001137	LSM1	89	93.220	ENSFALG00000006723	LSM1	100	93.220	Ficedula_albicollis
ENSCLAG00000001137	LSM1	100	98.496	ENSFDAG00000007658	LSM1	100	98.496	Fukomys_damarensis
ENSCLAG00000001137	LSM1	100	81.955	ENSFHEG00000009556	lsm1	100	81.955	Fundulus_heteroclitus
ENSCLAG00000001137	LSM1	100	81.955	ENSGMOG00000016651	lsm1	98	81.955	Gadus_morhua
ENSCLAG00000001137	LSM1	100	91.729	ENSGALG00000003245	LSM1	100	91.729	Gallus_gallus
ENSCLAG00000001137	LSM1	100	81.955	ENSGAFG00000011355	lsm1	100	81.955	Gambusia_affinis
ENSCLAG00000001137	LSM1	100	82.707	ENSGACG00000011763	lsm1	98	82.707	Gasterosteus_aculeatus
ENSCLAG00000001137	LSM1	100	93.985	ENSGAGG00000024065	LSM1	100	93.985	Gopherus_agassizii
ENSCLAG00000001137	LSM1	100	98.496	ENSGGOG00000022658	LSM1	100	98.496	Gorilla_gorilla
ENSCLAG00000001137	LSM1	100	82.707	ENSHBUG00000010897	lsm1	100	82.707	Haplochromis_burtoni
ENSCLAG00000001137	LSM1	100	78.195	ENSHGLG00000017574	-	100	78.195	Heterocephalus_glaber_female
ENSCLAG00000001137	LSM1	100	98.496	ENSHGLG00000005711	LSM1	100	98.496	Heterocephalus_glaber_female
ENSCLAG00000001137	LSM1	100	78.195	ENSHGLG00100012152	-	100	78.195	Heterocephalus_glaber_male
ENSCLAG00000001137	LSM1	100	98.496	ENSHGLG00100017660	LSM1	100	98.496	Heterocephalus_glaber_male
ENSCLAG00000001137	LSM1	100	82.707	ENSHCOG00000017233	lsm1	100	82.707	Hippocampus_comes
ENSCLAG00000001137	LSM1	100	84.962	ENSIPUG00000002312	LSM1	100	84.962	Ictalurus_punctatus
ENSCLAG00000001137	LSM1	58	100.000	ENSSTOG00000026870	LSM1	94	100.000	Ictidomys_tridecemlineatus
ENSCLAG00000001137	LSM1	100	96.992	ENSJJAG00000014605	-	100	96.992	Jaculus_jaculus
ENSCLAG00000001137	LSM1	100	82.707	ENSKMAG00000003016	lsm1	100	82.707	Kryptolebias_marmoratus
ENSCLAG00000001137	LSM1	100	82.707	ENSLBEG00000022352	lsm1	100	82.707	Labrus_bergylta
ENSCLAG00000001137	LSM1	89	88.983	ENSLACG00000010947	LSM1	98	88.983	Latimeria_chalumnae
ENSCLAG00000001137	LSM1	100	93.233	ENSLOCG00000015149	lsm1	100	93.233	Lepisosteus_oculatus
ENSCLAG00000001137	LSM1	100	98.496	ENSLAFG00000003534	LSM1	100	98.496	Loxodonta_africana
ENSCLAG00000001137	LSM1	100	98.496	ENSMFAG00000032661	LSM1	100	98.496	Macaca_fascicularis
ENSCLAG00000001137	LSM1	100	98.496	ENSMLEG00000034535	LSM1	100	98.496	Mandrillus_leucophaeus
ENSCLAG00000001137	LSM1	100	82.707	ENSMAMG00000007464	lsm1	100	82.707	Mastacembelus_armatus
ENSCLAG00000001137	LSM1	100	82.707	ENSMZEG00005010321	lsm1	100	82.707	Maylandia_zebra
ENSCLAG00000001137	LSM1	100	91.729	ENSMGAG00000002125	LSM1	100	91.729	Meleagris_gallopavo
ENSCLAG00000001137	LSM1	100	97.744	ENSMICG00000030726	LSM1	100	97.744	Microcebus_murinus
ENSCLAG00000001137	LSM1	100	99.248	ENSMOCG00000022817	Lsm1	100	99.248	Microtus_ochrogaster
ENSCLAG00000001137	LSM1	100	83.459	ENSMMOG00000015466	lsm1	100	83.459	Mola_mola
ENSCLAG00000001137	LSM1	100	96.241	ENSMODG00000010732	-	100	96.241	Monodelphis_domestica
ENSCLAG00000001137	LSM1	58	92.208	ENSMALG00000001478	lsm1	82	92.208	Monopterus_albus
ENSCLAG00000001137	LSM1	100	97.744	MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	Mus_caroli
ENSCLAG00000001137	LSM1	100	97.744	ENSMUSG00000037296	Lsm1	100	97.744	Mus_musculus
ENSCLAG00000001137	LSM1	100	97.744	MGP_PahariEiJ_G0021400	Lsm1	100	97.744	Mus_pahari
ENSCLAG00000001137	LSM1	100	97.744	MGP_SPRETEiJ_G0032049	Lsm1	100	97.744	Mus_spretus
ENSCLAG00000001137	LSM1	100	97.744	ENSMPUG00000009883	LSM1	100	97.744	Mustela_putorius_furo
ENSCLAG00000001137	LSM1	100	97.744	ENSMLUG00000003734	LSM1	100	97.744	Myotis_lucifugus
ENSCLAG00000001137	LSM1	100	97.744	ENSNGAG00000003753	Lsm1	100	97.744	Nannospalax_galili
ENSCLAG00000001137	LSM1	58	92.208	ENSNBRG00000017370	lsm1	66	92.208	Neolamprologus_brichardi
ENSCLAG00000001137	LSM1	100	98.496	ENSNLEG00000029390	LSM1	100	98.496	Nomascus_leucogenys
ENSCLAG00000001137	LSM1	100	96.241	ENSMEUG00000014077	LSM1	100	96.241	Notamacropus_eugenii
ENSCLAG00000001137	LSM1	88	95.726	ENSOPRG00000000333	LSM1	100	95.726	Ochotona_princeps
ENSCLAG00000001137	LSM1	100	98.496	ENSODEG00000004834	LSM1	100	98.496	Octodon_degus
ENSCLAG00000001137	LSM1	100	82.707	ENSONIG00000010782	lsm1	100	82.707	Oreochromis_niloticus
ENSCLAG00000001137	LSM1	100	95.489	ENSOANG00000003256	LSM1	100	95.489	Ornithorhynchus_anatinus
ENSCLAG00000001137	LSM1	100	98.496	ENSOCUG00000015399	LSM1	100	98.496	Oryctolagus_cuniculus
ENSCLAG00000001137	LSM1	100	84.211	ENSORLG00000030288	lsm1	100	84.211	Oryzias_latipes
ENSCLAG00000001137	LSM1	100	82.707	ENSORLG00020006213	-	86	82.707	Oryzias_latipes_hni
ENSCLAG00000001137	LSM1	100	84.211	ENSORLG00020003941	lsm1	100	84.211	Oryzias_latipes_hni
ENSCLAG00000001137	LSM1	100	84.211	ENSORLG00015018350	lsm1	100	84.211	Oryzias_latipes_hsok
ENSCLAG00000001137	LSM1	100	82.707	ENSOMEG00000012454	lsm1	100	82.707	Oryzias_melastigma
ENSCLAG00000001137	LSM1	100	98.496	ENSOGAG00000015161	LSM1	100	98.496	Otolemur_garnettii
ENSCLAG00000001137	LSM1	100	98.496	ENSOARG00000001317	LSM1	100	98.496	Ovis_aries
ENSCLAG00000001137	LSM1	100	98.496	ENSPPAG00000032279	LSM1	100	98.496	Pan_paniscus
ENSCLAG00000001137	LSM1	100	98.496	ENSPPRG00000014172	-	100	98.496	Panthera_pardus
ENSCLAG00000001137	LSM1	100	98.496	ENSPTIG00000010289	LSM1	100	98.496	Panthera_tigris_altaica
ENSCLAG00000001137	LSM1	100	98.496	ENSPTRG00000020169	LSM1	100	98.496	Pan_troglodytes
ENSCLAG00000001137	LSM1	100	98.496	ENSPANG00000008814	LSM1	100	98.496	Papio_anubis
ENSCLAG00000001137	LSM1	100	81.203	ENSPKIG00000019409	LSM1	99	81.203	Paramormyrops_kingsleyae
ENSCLAG00000001137	LSM1	100	88.722	ENSPKIG00000001839	lsm1	100	88.722	Paramormyrops_kingsleyae
ENSCLAG00000001137	LSM1	98	87.692	ENSPSIG00000012563	LSM1	99	87.692	Pelodiscus_sinensis
ENSCLAG00000001137	LSM1	58	92.208	ENSPMGG00000022999	lsm1	73	92.208	Periophthalmus_magnuspinnatus
ENSCLAG00000001137	LSM1	85	78.761	ENSPMAG00000002671	lsm1	100	78.761	Petromyzon_marinus
ENSCLAG00000001137	LSM1	100	94.737	ENSPCIG00000008880	LSM1	100	94.737	Phascolarctos_cinereus
ENSCLAG00000001137	LSM1	100	81.955	ENSPFOG00000016029	lsm1	100	81.955	Poecilia_formosa
ENSCLAG00000001137	LSM1	100	81.955	ENSPLAG00000007879	lsm1	100	81.955	Poecilia_latipinna
ENSCLAG00000001137	LSM1	100	81.955	ENSPMEG00000023550	lsm1	100	81.955	Poecilia_mexicana
ENSCLAG00000001137	LSM1	100	81.955	ENSPREG00000009574	lsm1	100	81.955	Poecilia_reticulata
ENSCLAG00000001137	LSM1	100	98.496	ENSPPYG00000018521	LSM1	100	98.496	Pongo_abelii
ENSCLAG00000001137	LSM1	100	98.496	ENSPCOG00000020901	-	100	98.496	Propithecus_coquereli
ENSCLAG00000001137	LSM1	100	98.496	ENSPVAG00000006016	LSM1	100	98.496	Pteropus_vampyrus
ENSCLAG00000001137	LSM1	100	82.707	ENSPNYG00000018067	lsm1	100	82.707	Pundamilia_nyererei
ENSCLAG00000001137	LSM1	100	84.211	ENSPNAG00000013707	lsm1	100	84.211	Pygocentrus_nattereri
ENSCLAG00000001137	LSM1	100	97.744	ENSRNOG00000015375	Lsm1	100	97.744	Rattus_norvegicus
ENSCLAG00000001137	LSM1	100	98.496	ENSRBIG00000027449	LSM1	100	98.496	Rhinopithecus_bieti
ENSCLAG00000001137	LSM1	100	98.496	ENSRROG00000036074	LSM1	100	98.496	Rhinopithecus_roxellana
ENSCLAG00000001137	LSM1	87	42.149	YJL124C	LSM1	70	42.149	Saccharomyces_cerevisiae
ENSCLAG00000001137	LSM1	100	96.241	ENSSHAG00000017260	LSM1	100	96.241	Sarcophilus_harrisii
ENSCLAG00000001137	LSM1	100	90.226	ENSSFOG00015019528	lsm1	100	90.226	Scleropages_formosus
ENSCLAG00000001137	LSM1	100	82.707	ENSSMAG00000004930	lsm1	100	82.707	Scophthalmus_maximus
ENSCLAG00000001137	LSM1	100	82.707	ENSSDUG00000021823	lsm1	100	82.707	Seriola_dumerili
ENSCLAG00000001137	LSM1	100	82.707	ENSSLDG00000012154	lsm1	100	82.707	Seriola_lalandi_dorsalis
ENSCLAG00000001137	LSM1	100	93.985	ENSSPUG00000014878	LSM1	100	93.985	Sphenodon_punctatus
ENSCLAG00000001137	LSM1	100	83.459	ENSSPAG00000020548	lsm1	100	83.459	Stegastes_partitus
ENSCLAG00000001137	LSM1	100	98.496	ENSSSCG00000039058	LSM1	100	98.496	Sus_scrofa
ENSCLAG00000001137	LSM1	100	93.233	ENSTGUG00000004793	LSM1	100	93.233	Taeniopygia_guttata
ENSCLAG00000001137	LSM1	100	84.962	ENSTRUG00000025239	lsm1	100	84.962	Takifugu_rubripes
ENSCLAG00000001137	LSM1	100	84.962	ENSTNIG00000004055	lsm1	100	84.962	Tetraodon_nigroviridis
ENSCLAG00000001137	LSM1	88	97.436	ENSTBEG00000015884	LSM1	100	97.436	Tupaia_belangeri
ENSCLAG00000001137	LSM1	100	98.496	ENSTTRG00000004482	LSM1	100	98.496	Tursiops_truncatus
ENSCLAG00000001137	LSM1	100	98.496	ENSUAMG00000004103	LSM1	100	98.496	Ursus_americanus
ENSCLAG00000001137	LSM1	100	98.496	ENSUMAG00000009132	LSM1	100	98.496	Ursus_maritimus
ENSCLAG00000001137	LSM1	58	98.701	ENSVPAG00000011593	LSM1	100	98.701	Vicugna_pacos
ENSCLAG00000001137	LSM1	100	98.496	ENSVVUG00000020191	LSM1	100	98.496	Vulpes_vulpes
ENSCLAG00000001137	LSM1	65	69.767	ENSVVUG00000014880	-	91	69.767	Vulpes_vulpes
ENSCLAG00000001137	LSM1	100	91.241	ENSXETG00000009004	lsm1	100	91.241	Xenopus_tropicalis
ENSCLAG00000001137	LSM1	100	81.203	ENSXCOG00000015631	lsm1	100	81.203	Xiphophorus_couchianus
ENSCLAG00000001137	LSM1	100	81.203	ENSXMAG00000026637	lsm1	100	81.203	Xiphophorus_maculatus