EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCLAG00000001451 (Gene tree)
Gene ID: 102014073
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Plus strand
Length: 120123 bases
Position: chrJH721968.1:3441683-3561805
Accession: 102014073
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000001981	XRN_N	PF03159.18	1.7e-96	1	1
ENSCLAP00000001980	XRN_N	PF03159.18	3.1e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000002025	XRN1-201	5181	XM_005407742	ENSCLAP00000001980	1726 (aa)	XP_005407799	-
ENSCLAT00000002026	XRN1-202	2910	-	ENSCLAP00000001981	969 (aa)	-	-

Gene Model

Click here to download ENSCLAG00000001451's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000001451's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCLAG00000001451	XRN1	61	39.060	ENSCLAG00000013419	XRN2	71	38.743

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000001451	XRN1	99	96.038	ENSG00000114127	XRN1	100	99.394	Homo_sapiens
ENSCLAG00000001451	XRN1	99	78.413	ENSAPOG00000000622	xrn1	100	70.439	Acanthochromis_polyacanthus
ENSCLAG00000001451	XRN1	99	95.563	ENSAMEG00000012538	XRN1	100	89.261	Ailuropoda_melanoleuca
ENSCLAG00000001451	XRN1	99	78.447	ENSACIG00000001057	xrn1	98	72.683	Amphilophus_citrinellus
ENSCLAG00000001451	XRN1	99	78.537	ENSAOCG00000014097	xrn1	95	67.470	Amphiprion_ocellaris
ENSCLAG00000001451	XRN1	99	78.537	ENSAPEG00000006620	xrn1	91	72.713	Amphiprion_percula
ENSCLAG00000001451	XRN1	99	76.190	ENSATEG00000009752	xrn1	100	69.225	Anabas_testudineus
ENSCLAG00000001451	XRN1	96	88.742	ENSAPLG00000004905	XRN1	100	75.246	Anas_platyrhynchos
ENSCLAG00000001451	XRN1	99	86.032	ENSACAG00000004985	XRN1	100	72.128	Anolis_carolinensis
ENSCLAG00000001451	XRN1	99	96.661	ENSANAG00000029013	XRN1	99	94.969	Aotus_nancymaae
ENSCLAG00000001451	XRN1	99	77.021	ENSACLG00000004806	xrn1	99	61.355	Astatotilapia_calliptera
ENSCLAG00000001451	XRN1	99	73.968	ENSAMXG00000019370	xrn1	95	94.175	Astyanax_mexicanus
ENSCLAG00000001451	XRN1	99	95.246	ENSBTAG00000011524	XRN1	100	85.567	Bos_taurus
ENSCLAG00000001451	XRN1	93	52.331	WBGene00012730	xrn-1	83	38.263	Caenorhabditis_elegans
ENSCLAG00000001451	XRN1	99	96.038	ENSCJAG00000001872	XRN1	100	87.767	Callithrix_jacchus
ENSCLAG00000001451	XRN1	99	95.721	ENSCAFG00000007783	XRN1	100	89.325	Canis_familiaris
ENSCLAG00000001451	XRN1	99	95.721	ENSCAFG00020009120	XRN1	99	93.615	Canis_lupus_dingo
ENSCLAG00000001451	XRN1	99	95.721	ENSCHIG00000019192	XRN1	99	88.998	Capra_hircus
ENSCLAG00000001451	XRN1	99	95.563	ENSTSYG00000002705	XRN1	100	88.113	Carlito_syrichta
ENSCLAG00000001451	XRN1	97	74.815	ENSCAPG00000004604	-	99	78.109	Cavia_aperea
ENSCLAG00000001451	XRN1	100	96.078	ENSCCAG00000034800	XRN1	100	96.078	Cebus_capucinus
ENSCLAG00000001451	XRN1	99	96.355	ENSCATG00000041794	XRN1	100	88.171	Cercocebus_atys
ENSCLAG00000001451	XRN1	99	96.513	ENSCSAG00000011265	XRN1	100	87.171	Chlorocebus_sabaeus
ENSCLAG00000001451	XRN1	60	98.701	ENSCHOG00000013961	-	62	98.701	Choloepus_hoffmanni
ENSCLAG00000001451	XRN1	84	61.026	ENSCSAVG00000008584	-	98	44.895	Ciona_savignyi
ENSCLAG00000001451	XRN1	100	96.285	ENSCANG00000037495	XRN1	100	96.285	Colobus_angolensis_palliatus
ENSCLAG00000001451	XRN1	99	95.880	ENSCGRG00001019411	Xrn1	99	95.880	Cricetulus_griseus_chok1gshd
ENSCLAG00000001451	XRN1	99	95.880	ENSCGRG00000012464	Xrn1	99	95.880	Cricetulus_griseus_crigri
ENSCLAG00000001451	XRN1	99	77.619	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSCLAG00000001451	XRN1	99	76.630	ENSCVAG00000013089	xrn1	99	72.095	Cyprinodon_variegatus
ENSCLAG00000001451	XRN1	99	79.873	ENSDARG00000091652	xrn1	98	79.958	Danio_rerio
ENSCLAG00000001451	XRN1	99	95.390	ENSDORG00000013833	Xrn1	100	85.690	Dipodomys_ordii
ENSCLAG00000001451	XRN1	94	55.294	FBgn0020261	pcm	76	40.124	Drosophila_melanogaster
ENSCLAG00000001451	XRN1	86	99.099	ENSETEG00000003978	XRN1	88	97.581	Echinops_telfairi
ENSCLAG00000001451	XRN1	100	95.459	ENSEASG00005002687	XRN1	100	95.459	Equus_asinus_asinus
ENSCLAG00000001451	XRN1	99	95.404	ENSECAG00000008301	XRN1	100	86.239	Equus_caballus
ENSCLAG00000001451	XRN1	84	96.848	ENSEEUG00000011323	XRN1	92	82.502	Erinaceus_europaeus
ENSCLAG00000001451	XRN1	99	78.639	ENSELUG00000000169	xrn1	100	61.738	Esox_lucius
ENSCLAG00000001451	XRN1	99	92.515	ENSFCAG00000027589	XRN1	99	95.824	Felis_catus
ENSCLAG00000001451	XRN1	99	88.553	ENSFALG00000007021	XRN1	100	73.681	Ficedula_albicollis
ENSCLAG00000001451	XRN1	100	97.420	ENSFDAG00000020494	XRN1	100	97.420	Fukomys_damarensis
ENSCLAG00000001451	XRN1	50	70.894	ENSFHEG00000017356	-	98	70.270	Fundulus_heteroclitus
ENSCLAG00000001451	XRN1	99	76.789	ENSGMOG00000006396	xrn1	83	67.893	Gadus_morhua
ENSCLAG00000001451	XRN1	99	88.871	ENSGALG00000002706	XRN1	100	74.157	Gallus_gallus
ENSCLAG00000001451	XRN1	99	76.498	ENSGACG00000014328	xrn1	100	60.511	Gasterosteus_aculeatus
ENSCLAG00000001451	XRN1	99	88.095	ENSGAGG00000017535	XRN1	99	77.456	Gopherus_agassizii
ENSCLAG00000001451	XRN1	99	96.038	ENSGGOG00000008047	XRN1	100	87.998	Gorilla_gorilla
ENSCLAG00000001451	XRN1	99	75.277	ENSHBUG00000005908	xrn1	98	72.951	Haplochromis_burtoni
ENSCLAG00000001451	XRN1	99	97.831	ENSHGLG00000014476	XRN1	100	97.831	Heterocephalus_glaber_female
ENSCLAG00000001451	XRN1	99	97.831	ENSHGLG00100015130	XRN1	100	97.831	Heterocephalus_glaber_male
ENSCLAG00000001451	XRN1	99	77.567	ENSHCOG00000014062	xrn1	99	69.531	Hippocampus_comes
ENSCLAG00000001451	XRN1	99	79.683	ENSIPUG00000015229	xrn1	99	62.860	Ictalurus_punctatus
ENSCLAG00000001451	XRN1	99	96.355	ENSSTOG00000013552	XRN1	99	96.355	Ictidomys_tridecemlineatus
ENSCLAG00000001451	XRN1	97	93.962	ENSJJAG00000010863	Xrn1	100	93.962	Jaculus_jaculus
ENSCLAG00000001451	XRN1	99	77.955	ENSKMAG00000021356	xrn1	94	76.371	Kryptolebias_marmoratus
ENSCLAG00000001451	XRN1	99	77.742	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSCLAG00000001451	XRN1	99	84.603	ENSLACG00000009020	XRN1	100	68.686	Latimeria_chalumnae
ENSCLAG00000001451	XRN1	99	82.464	ENSLOCG00000007944	xrn1	100	64.500	Lepisosteus_oculatus
ENSCLAG00000001451	XRN1	99	95.548	ENSLAFG00000015426	XRN1	100	95.136	Loxodonta_africana
ENSCLAG00000001451	XRN1	99	96.197	ENSMFAG00000032599	XRN1	100	88.171	Macaca_fascicularis
ENSCLAG00000001451	XRN1	99	96.355	ENSMMUG00000014038	XRN1	100	88.229	Macaca_mulatta
ENSCLAG00000001451	XRN1	99	95.880	ENSMNEG00000034217	XRN1	100	87.998	Macaca_nemestrina
ENSCLAG00000001451	XRN1	99	78.254	ENSMAMG00000013219	xrn1	95	76.749	Mastacembelus_armatus
ENSCLAG00000001451	XRN1	99	77.179	ENSMZEG00005015099	xrn1	99	61.351	Maylandia_zebra
ENSCLAG00000001451	XRN1	97	84.488	ENSMGAG00000006333	XRN1	100	74.173	Meleagris_gallopavo
ENSCLAG00000001451	XRN1	99	95.721	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSCLAG00000001451	XRN1	100	93.705	ENSMOCG00000008665	Xrn1	100	93.705	Microtus_ochrogaster
ENSCLAG00000001451	XRN1	54	68.450	ENSMMOG00000020896	-	96	68.266	Mola_mola
ENSCLAG00000001451	XRN1	99	89.968	ENSMODG00000021236	XRN1	100	77.511	Monodelphis_domestica
ENSCLAG00000001451	XRN1	99	71.270	ENSMALG00000004098	xrn1	100	57.208	Monopterus_albus
ENSCLAG00000001451	XRN1	99	94.215	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSCLAG00000001451	XRN1	99	94.929	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSCLAG00000001451	XRN1	99	94.612	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSCLAG00000001451	XRN1	99	94.929	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSCLAG00000001451	XRN1	99	96.038	ENSMPUG00000012040	XRN1	100	86.197	Mustela_putorius_furo
ENSCLAG00000001451	XRN1	98	94.913	ENSMLUG00000016885	XRN1	100	87.572	Myotis_lucifugus
ENSCLAG00000001451	XRN1	99	91.909	ENSNGAG00000023964	Xrn1	100	91.909	Nannospalax_galili
ENSCLAG00000001451	XRN1	99	96.672	ENSNLEG00000004726	XRN1	100	88.171	Nomascus_leucogenys
ENSCLAG00000001451	XRN1	71	98.969	ENSMEUG00000014473	-	73	99.029	Notamacropus_eugenii
ENSCLAG00000001451	XRN1	74	91.304	ENSOPRG00000007337	-	78	83.732	Ochotona_princeps
ENSCLAG00000001451	XRN1	99	77.937	ENSONIG00000016673	xrn1	99	65.385	Oreochromis_niloticus
ENSCLAG00000001451	XRN1	85	88.306	ENSOANG00000006735	XRN1	100	75.810	Ornithorhynchus_anatinus
ENSCLAG00000001451	XRN1	99	96.513	ENSOCUG00000001861	XRN1	100	86.991	Oryctolagus_cuniculus
ENSCLAG00000001451	XRN1	99	78.459	ENSORLG00000013005	xrn1	100	59.933	Oryzias_latipes
ENSCLAG00000001451	XRN1	99	79.206	ENSORLG00020005559	xrn1	97	72.392	Oryzias_latipes_hni
ENSCLAG00000001451	XRN1	99	78.730	ENSORLG00015022523	xrn1	100	61.351	Oryzias_latipes_hsok
ENSCLAG00000001451	XRN1	99	78.537	ENSOMEG00000015397	xrn1	100	73.024	Oryzias_melastigma
ENSCLAG00000001451	XRN1	99	90.808	ENSOGAG00000000170	XRN1	100	83.792	Otolemur_garnettii
ENSCLAG00000001451	XRN1	99	95.880	ENSOARG00000006343	XRN1	99	87.615	Ovis_aries
ENSCLAG00000001451	XRN1	99	95.721	ENSPPAG00000010180	XRN1	100	87.882	Pan_paniscus
ENSCLAG00000001451	XRN1	99	95.728	ENSPPRG00000007125	XRN1	100	87.601	Panthera_pardus
ENSCLAG00000001451	XRN1	99	95.728	ENSPTIG00000021081	XRN1	100	87.601	Panthera_tigris_altaica
ENSCLAG00000001451	XRN1	99	95.721	ENSPTRG00000015482	XRN1	100	87.940	Pan_troglodytes
ENSCLAG00000001451	XRN1	99	96.355	ENSPANG00000010638	XRN1	100	88.113	Papio_anubis
ENSCLAG00000001451	XRN1	99	88.114	ENSPSIG00000018050	XRN1	100	75.856	Pelodiscus_sinensis
ENSCLAG00000001451	XRN1	99	74.690	ENSPMGG00000002648	xrn1	99	78.323	Periophthalmus_magnuspinnatus
ENSCLAG00000001451	XRN1	100	94.221	ENSPEMG00000020610	Xrn1	99	95.246	Peromyscus_maniculatus_bairdii
ENSCLAG00000001451	XRN1	83	56.289	ENSPMAG00000002975	xrn1	91	78.448	Petromyzon_marinus
ENSCLAG00000001451	XRN1	99	89.984	ENSPCIG00000028735	XRN1	100	88.946	Phascolarctos_cinereus
ENSCLAG00000001451	XRN1	99	78.425	ENSPFOG00000013932	xrn1	97	64.470	Poecilia_formosa
ENSCLAG00000001451	XRN1	99	78.730	ENSPLAG00000021653	xrn1	97	64.340	Poecilia_latipinna
ENSCLAG00000001451	XRN1	99	78.515	ENSPMEG00000003076	xrn1	95	64.063	Poecilia_mexicana
ENSCLAG00000001451	XRN1	99	78.233	ENSPREG00000021147	xrn1	100	61.176	Poecilia_reticulata
ENSCLAG00000001451	XRN1	99	96.355	ENSPPYG00000014172	XRN1	100	87.113	Pongo_abelii
ENSCLAG00000001451	XRN1	92	94.872	ENSPCAG00000005638	XRN1	96	79.908	Procavia_capensis
ENSCLAG00000001451	XRN1	100	95.872	ENSPCOG00000013089	XRN1	99	95.880	Propithecus_coquereli
ENSCLAG00000001451	XRN1	99	93.072	ENSPVAG00000016265	XRN1	96	90.555	Pteropus_vampyrus
ENSCLAG00000001451	XRN1	99	77.179	ENSPNYG00000010570	xrn1	99	71.361	Pundamilia_nyererei
ENSCLAG00000001451	XRN1	99	76.619	ENSPNAG00000023531	xrn1	99	60.207	Pygocentrus_nattereri
ENSCLAG00000001451	XRN1	99	94.612	ENSRNOG00000042951	Xrn1	100	86.455	Rattus_norvegicus
ENSCLAG00000001451	XRN1	99	96.355	ENSRBIG00000041227	XRN1	100	87.478	Rhinopithecus_bieti
ENSCLAG00000001451	XRN1	82	54.496	YGL173C	XRN1	73	54.496	Saccharomyces_cerevisiae
ENSCLAG00000001451	XRN1	99	96.197	ENSSBOG00000029561	XRN1	100	87.594	Saimiri_boliviensis_boliviensis
ENSCLAG00000001451	XRN1	96	89.769	ENSSHAG00000016207	XRN1	100	79.113	Sarcophilus_harrisii
ENSCLAG00000001451	XRN1	99	78.378	ENSSFOG00015024211	xrn1	100	61.499	Scleropages_formosus
ENSCLAG00000001451	XRN1	99	79.556	ENSSMAG00000016534	xrn1	97	72.132	Scophthalmus_maximus
ENSCLAG00000001451	XRN1	99	79.272	ENSSDUG00000010306	xrn1	97	72.123	Seriola_dumerili
ENSCLAG00000001451	XRN1	99	79.114	ENSSLDG00000021543	xrn1	100	71.746	Seriola_lalandi_dorsalis
ENSCLAG00000001451	XRN1	89	92.053	ENSSARG00000007741	-	81	84.607	Sorex_araneus
ENSCLAG00000001451	XRN1	50	76.471	ENSSPAG00000009856	-	96	76.673	Stegastes_partitus
ENSCLAG00000001451	XRN1	99	88.553	ENSTGUG00000008498	XRN1	100	75.374	Taeniopygia_guttata
ENSCLAG00000001451	XRN1	99	77.157	ENSTRUG00000004895	xrn1	96	77.399	Takifugu_rubripes
ENSCLAG00000001451	XRN1	97	76.606	ENSTNIG00000017615	xrn1	100	57.610	Tetraodon_nigroviridis
ENSCLAG00000001451	XRN1	99	86.603	ENSTBEG00000003256	XRN1	84	97.844	Tupaia_belangeri
ENSCLAG00000001451	XRN1	99	94.277	ENSTTRG00000012914	XRN1	95	86.977	Tursiops_truncatus
ENSCLAG00000001451	XRN1	99	95.210	ENSUAMG00000001608	XRN1	99	92.554	Ursus_americanus
ENSCLAG00000001451	XRN1	99	95.880	ENSUMAG00000013625	XRN1	100	89.844	Ursus_maritimus
ENSCLAG00000001451	XRN1	99	95.880	ENSVPAG00000004690	XRN1	100	83.104	Vicugna_pacos
ENSCLAG00000001451	XRN1	99	96.074	ENSVVUG00000024461	XRN1	98	97.368	Vulpes_vulpes
ENSCLAG00000001451	XRN1	99	82.622	ENSXETG00000000619	xrn1	97	88.978	Xenopus_tropicalis
ENSCLAG00000001451	XRN1	99	77.901	ENSXCOG00000007917	xrn1	96	72.779	Xiphophorus_couchianus
ENSCLAG00000001451	XRN1	99	77.424	ENSXMAG00000018320	xrn1	100	69.400	Xiphophorus_maculatus