EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCLAG00000002171 (Gene tree)
Gene ID: 102014772
Gene Symbol: SMARCA1
Alias: ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SWI|hSNF2L
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Plus strand
Length: 74496 bases
Position: chrJH721933.1:5498674-5573169
Accession: 102014772
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000003026	ResIII	PF04851.15	6.1e-12	1	1
ENSCLAP00000003027	ResIII	PF04851.15	6.2e-12	1	1
ENSCLAP00000003027	DEAD	PF00270.29	1.9e-06	1	1
ENSCLAP00000003026	DEAD	PF00270.29	1.9e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000003089	SMARCA1-201	4113	XM_005401264	ENSCLAP00000003026	1058 (aa)	XP_005401321	UPI00038EC90E
ENSCLAT00000003090	SMARCA1-202	3165	XM_005401267	ENSCLAP00000003027	1054 (aa)	XP_005401324	UPI00038F12F2

Gene Model

Click here to download ENSCLAG00000002171's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000002171's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCLAG00000002171	SMARCA1	59	38.872	ENSCLAG00000007137	CHD9	57	43.426
ENSCLAG00000002171	SMARCA1	93	84.709	ENSCLAG00000006153	SMARCA5	98	84.709
ENSCLAG00000002171	SMARCA1	52	30.603	ENSCLAG00000015218	-	51	30.603
ENSCLAG00000002171	SMARCA1	50	45.247	ENSCLAG00000003938	HELLS	65	47.410
ENSCLAG00000002171	SMARCA1	55	42.466	ENSCLAG00000000880	CHD1L	62	43.881

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000002171	SMARCA1	100	97.070	ENSG00000102038	SMARCA1	100	97.070	Homo_sapiens
ENSCLAG00000002171	SMARCA1	92	82.992	ENSAPOG00000016035	smarca5	98	83.479	Acanthochromis_polyacanthus
ENSCLAG00000002171	SMARCA1	100	94.860	ENSAMEG00000015218	SMARCA1	98	95.333	Ailuropoda_melanoleuca
ENSCLAG00000002171	SMARCA1	85	83.389	ENSACIG00000016982	smarca5	99	83.482	Amphilophus_citrinellus
ENSCLAG00000002171	SMARCA1	92	82.992	ENSAOCG00000015578	smarca5	95	82.020	Amphiprion_ocellaris
ENSCLAG00000002171	SMARCA1	92	82.992	ENSAPEG00000011117	smarca5	99	83.608	Amphiprion_percula
ENSCLAG00000002171	SMARCA1	93	82.485	ENSATEG00000012894	smarca5	95	81.919	Anabas_testudineus
ENSCLAG00000002171	SMARCA1	93	92.057	ENSAPLG00000013149	SMARCA1	100	92.057	Anas_platyrhynchos
ENSCLAG00000002171	SMARCA1	97	89.029	ENSACAG00000011376	SMARCA1	95	90.991	Anolis_carolinensis
ENSCLAG00000002171	SMARCA1	98	92.004	ENSANAG00000023098	SMARCA1	98	92.004	Aotus_nancymaae
ENSCLAG00000002171	SMARCA1	97	80.156	ENSACLG00000025356	smarca5	95	82.460	Astatotilapia_calliptera
ENSCLAG00000002171	SMARCA1	98	80.077	ENSAMXG00000005709	smarca5	94	83.385	Astyanax_mexicanus
ENSCLAG00000002171	SMARCA1	88	87.419	ENSAMXG00000011227	smarca1	99	88.970	Astyanax_mexicanus
ENSCLAG00000002171	SMARCA1	99	96.099	ENSBTAG00000002292	SMARCA1	100	96.099	Bos_taurus
ENSCLAG00000002171	SMARCA1	93	63.068	WBGene00002169	isw-1	97	63.068	Caenorhabditis_elegans
ENSCLAG00000002171	SMARCA1	100	96.786	ENSCJAG00000002868	SMARCA1	100	96.786	Callithrix_jacchus
ENSCLAG00000002171	SMARCA1	100	86.419	ENSCAFG00000018673	SMARCA1	99	87.412	Canis_familiaris
ENSCLAG00000002171	SMARCA1	100	96.503	ENSCAFG00020001751	SMARCA1	100	96.503	Canis_lupus_dingo
ENSCLAG00000002171	SMARCA1	100	96.230	ENSCHIG00000009837	SMARCA1	100	96.230	Capra_hircus
ENSCLAG00000002171	SMARCA1	95	97.300	ENSTSYG00000004240	SMARCA1	98	96.640	Carlito_syrichta
ENSCLAG00000002171	SMARCA1	100	96.679	ENSCPOG00000013601	SMARCA1	100	96.679	Cavia_porcellus
ENSCLAG00000002171	SMARCA1	98	93.931	ENSCCAG00000030817	SMARCA1	98	93.931	Cebus_capucinus
ENSCLAG00000002171	SMARCA1	100	95.981	ENSCATG00000015921	SMARCA1	99	97.005	Cercocebus_atys
ENSCLAG00000002171	SMARCA1	100	97.164	ENSCSAG00000008460	SMARCA1	100	97.164	Chlorocebus_sabaeus
ENSCLAG00000002171	SMARCA1	95	91.908	ENSCPBG00000001146	SMARCA1	94	91.992	Chrysemys_picta_bellii
ENSCLAG00000002171	SMARCA1	93	72.681	ENSCING00000004110	swi/snf	98	72.681	Ciona_intestinalis
ENSCLAG00000002171	SMARCA1	93	72.016	ENSCSAVG00000004620	-	100	73.719	Ciona_savignyi
ENSCLAG00000002171	SMARCA1	100	96.975	ENSCANG00000007183	SMARCA1	100	96.975	Colobus_angolensis_palliatus
ENSCLAG00000002171	SMARCA1	100	93.673	ENSCGRG00001010776	Smarca1	98	94.321	Cricetulus_griseus_chok1gshd
ENSCLAG00000002171	SMARCA1	95	94.910	ENSCGRG00000015301	Smarca1	98	95.377	Cricetulus_griseus_crigri
ENSCLAG00000002171	SMARCA1	92	82.992	ENSCSEG00000000328	smarca5	95	82.222	Cynoglossus_semilaevis
ENSCLAG00000002171	SMARCA1	93	82.383	ENSCVAG00000008668	smarca5	99	83.157	Cyprinodon_variegatus
ENSCLAG00000002171	SMARCA1	93	84.403	ENSDARG00000012776	smarca1	98	84.403	Danio_rerio
ENSCLAG00000002171	SMARCA1	95	80.773	ENSDARG00000052348	smarca5	95	82.103	Danio_rerio
ENSCLAG00000002171	SMARCA1	98	93.580	ENSDNOG00000004315	SMARCA1	98	94.778	Dasypus_novemcinctus
ENSCLAG00000002171	SMARCA1	100	94.972	ENSDORG00000009270	Smarca1	99	96.039	Dipodomys_ordii
ENSCLAG00000002171	SMARCA1	91	72.822	FBgn0011604	Iswi	98	71.909	Drosophila_melanogaster
ENSCLAG00000002171	SMARCA1	79	91.964	ENSETEG00000017426	SMARCA1	86	91.964	Echinops_telfairi
ENSCLAG00000002171	SMARCA1	93	80.490	ENSEBUG00000001239	smarca5	96	80.490	Eptatretus_burgeri
ENSCLAG00000002171	SMARCA1	95	92.445	ENSEASG00005008218	SMARCA1	100	92.626	Equus_asinus_asinus
ENSCLAG00000002171	SMARCA1	100	96.418	ENSECAG00000012106	SMARCA1	100	96.418	Equus_caballus
ENSCLAG00000002171	SMARCA1	77	95.033	ENSEEUG00000014927	SMARCA1	84	95.033	Erinaceus_europaeus
ENSCLAG00000002171	SMARCA1	96	84.350	ENSELUG00000010515	smarca1	98	85.550	Esox_lucius
ENSCLAG00000002171	SMARCA1	100	96.692	ENSFCAG00000018496	SMARCA1	100	96.692	Felis_catus
ENSCLAG00000002171	SMARCA1	88	91.135	ENSFALG00000000209	SMARCA1	98	92.434	Ficedula_albicollis
ENSCLAG00000002171	SMARCA1	95	98.697	ENSFDAG00000009818	SMARCA1	98	98.697	Fukomys_damarensis
ENSCLAG00000002171	SMARCA1	93	82.892	ENSFHEG00000007687	smarca5	94	82.323	Fundulus_heteroclitus
ENSCLAG00000002171	SMARCA1	94	89.829	ENSGALG00000008431	SMARCA1	96	91.889	Gallus_gallus
ENSCLAG00000002171	SMARCA1	93	82.688	ENSGAFG00000017731	smarca5	95	82.121	Gambusia_affinis
ENSCLAG00000002171	SMARCA1	92	92.490	ENSGAGG00000023575	SMARCA1	100	92.490	Gopherus_agassizii
ENSCLAG00000002171	SMARCA1	71	96.000	ENSGGOG00000012841	-	95	96.000	Gorilla_gorilla
ENSCLAG00000002171	SMARCA1	100	97.438	ENSHGLG00000003080	SMARCA1	100	97.438	Heterocephalus_glaber_female
ENSCLAG00000002171	SMARCA1	94	97.769	ENSHGLG00100001102	SMARCA1	100	97.403	Heterocephalus_glaber_male
ENSCLAG00000002171	SMARCA1	92	83.027	ENSHCOG00000005458	smarca5	95	82.323	Hippocampus_comes
ENSCLAG00000002171	SMARCA1	97	80.118	ENSIPUG00000005229	SMARCA5	97	82.150	Ictalurus_punctatus
ENSCLAG00000002171	SMARCA1	95	84.257	ENSIPUG00000016905	Smarca1	99	85.904	Ictalurus_punctatus
ENSCLAG00000002171	SMARCA1	100	97.070	ENSSTOG00000014524	SMARCA1	100	97.070	Ictidomys_tridecemlineatus
ENSCLAG00000002171	SMARCA1	100	95.484	ENSJJAG00000002593	Smarca1	100	95.484	Jaculus_jaculus
ENSCLAG00000002171	SMARCA1	92	82.924	ENSKMAG00000003777	smarca5	95	82.222	Kryptolebias_marmoratus
ENSCLAG00000002171	SMARCA1	88	83.351	ENSLBEG00000013295	SMARCA1	100	84.576	Labrus_bergylta
ENSCLAG00000002171	SMARCA1	93	82.121	ENSLBEG00000018112	smarca5	95	82.121	Labrus_bergylta
ENSCLAG00000002171	SMARCA1	97	88.132	ENSLACG00000016697	SMARCA1	98	89.790	Latimeria_chalumnae
ENSCLAG00000002171	SMARCA1	94	88.265	ENSLOCG00000014591	smarca1	97	88.265	Lepisosteus_oculatus
ENSCLAG00000002171	SMARCA1	95	95.924	ENSLAFG00000000896	SMARCA1	100	95.924	Loxodonta_africana
ENSCLAG00000002171	SMARCA1	100	97.070	ENSMFAG00000002117	SMARCA1	99	97.005	Macaca_fascicularis
ENSCLAG00000002171	SMARCA1	100	95.981	ENSMMUG00000008818	SMARCA1	99	97.487	Macaca_mulatta
ENSCLAG00000002171	SMARCA1	100	95.981	ENSMNEG00000041768	SMARCA1	99	97.005	Macaca_nemestrina
ENSCLAG00000002171	SMARCA1	100	97.164	ENSMLEG00000043198	SMARCA1	100	97.164	Mandrillus_leucophaeus
ENSCLAG00000002171	SMARCA1	93	82.892	ENSMAMG00000014294	smarca5	95	82.323	Mastacembelus_armatus
ENSCLAG00000002171	SMARCA1	97	80.156	ENSMZEG00005009369	smarca5	95	82.460	Maylandia_zebra
ENSCLAG00000002171	SMARCA1	95	90.148	ENSMGAG00000007042	SMARCA1	99	90.307	Meleagris_gallopavo
ENSCLAG00000002171	SMARCA1	100	95.256	ENSMAUG00000008133	Smarca1	98	95.551	Mesocricetus_auratus
ENSCLAG00000002171	SMARCA1	100	96.597	ENSMICG00000015768	SMARCA1	100	96.597	Microcebus_murinus
ENSCLAG00000002171	SMARCA1	100	95.066	ENSMOCG00000009464	Smarca1	98	95.358	Microtus_ochrogaster
ENSCLAG00000002171	SMARCA1	93	80.404	ENSMMOG00000005547	smarca5	99	80.404	Mola_mola
ENSCLAG00000002171	SMARCA1	98	89.448	ENSMODG00000013187	-	99	89.255	Monodelphis_domestica
ENSCLAG00000002171	SMARCA1	92	82.618	ENSMALG00000002081	smarca5	97	82.202	Monopterus_albus
ENSCLAG00000002171	SMARCA1	100	94.544	MGP_CAROLIEiJ_G0033034	Smarca1	98	94.727	Mus_caroli
ENSCLAG00000002171	SMARCA1	100	94.732	ENSMUSG00000031099	Smarca1	98	94.919	Mus_musculus
ENSCLAG00000002171	SMARCA1	100	94.544	MGP_PahariEiJ_G0031579	Smarca1	98	94.631	Mus_pahari
ENSCLAG00000002171	SMARCA1	100	94.638	MGP_SPRETEiJ_G0034192	Smarca1	98	94.823	Mus_spretus
ENSCLAG00000002171	SMARCA1	99	96.371	ENSMPUG00000017423	SMARCA1	95	95.327	Mustela_putorius_furo
ENSCLAG00000002171	SMARCA1	98	93.301	ENSMLUG00000029614	SMARCA1	98	92.776	Myotis_lucifugus
ENSCLAG00000002171	SMARCA1	100	94.334	ENSNGAG00000006492	Smarca1	100	94.334	Nannospalax_galili
ENSCLAG00000002171	SMARCA1	93	82.994	ENSNBRG00000004463	smarca5	99	82.560	Neolamprologus_brichardi
ENSCLAG00000002171	SMARCA1	100	95.140	ENSNLEG00000015179	SMARCA1	100	95.140	Nomascus_leucogenys
ENSCLAG00000002171	SMARCA1	90	81.408	ENSMEUG00000008819	SMARCA1	99	81.388	Notamacropus_eugenii
ENSCLAG00000002171	SMARCA1	100	97.533	ENSODEG00000012163	SMARCA1	100	97.533	Octodon_degus
ENSCLAG00000002171	SMARCA1	97	80.253	ENSONIG00000009993	smarca5	95	82.560	Oreochromis_niloticus
ENSCLAG00000002171	SMARCA1	92	92.901	ENSOANG00000002862	SMARCA1	100	92.901	Ornithorhynchus_anatinus
ENSCLAG00000002171	SMARCA1	98	95.005	ENSOCUG00000001047	SMARCA1	98	94.701	Oryctolagus_cuniculus
ENSCLAG00000002171	SMARCA1	92	82.924	ENSORLG00000021998	smarca5	95	82.222	Oryzias_latipes
ENSCLAG00000002171	SMARCA1	92	83.027	ENSORLG00020017679	smarca5	96	81.682	Oryzias_latipes_hni
ENSCLAG00000002171	SMARCA1	92	82.924	ENSORLG00015017210	smarca5	95	82.121	Oryzias_latipes_hsok
ENSCLAG00000002171	SMARCA1	92	82.924	ENSOMEG00000000086	smarca5	95	82.121	Oryzias_melastigma
ENSCLAG00000002171	SMARCA1	100	96.584	ENSOGAG00000004399	SMARCA1	100	96.584	Otolemur_garnettii
ENSCLAG00000002171	SMARCA1	95	96.150	ENSOARG00000014638	SMARCA1	100	97.551	Ovis_aries
ENSCLAG00000002171	SMARCA1	100	97.070	ENSPPAG00000034647	SMARCA1	100	97.070	Pan_paniscus
ENSCLAG00000002171	SMARCA1	100	96.692	ENSPPRG00000008929	SMARCA1	100	96.692	Panthera_pardus
ENSCLAG00000002171	SMARCA1	95	95.477	ENSPTIG00000000915	SMARCA1	98	95.477	Panthera_tigris_altaica
ENSCLAG00000002171	SMARCA1	100	97.070	ENSPTRG00000049876	SMARCA1	99	97.005	Pan_troglodytes
ENSCLAG00000002171	SMARCA1	100	97.070	ENSPANG00000003871	SMARCA1	100	97.070	Papio_anubis
ENSCLAG00000002171	SMARCA1	93	84.913	ENSPKIG00000013411	smarca1	98	86.203	Paramormyrops_kingsleyae
ENSCLAG00000002171	SMARCA1	95	90.622	ENSPSIG00000010101	SMARCA1	100	92.181	Pelodiscus_sinensis
ENSCLAG00000002171	SMARCA1	100	95.636	ENSPEMG00000017503	Smarca1	98	96.035	Peromyscus_maniculatus_bairdii
ENSCLAG00000002171	SMARCA1	95	91.508	ENSPCIG00000015460	SMARCA1	98	91.592	Phascolarctos_cinereus
ENSCLAG00000002171	SMARCA1	92	82.924	ENSPFOG00000007649	smarca5	95	82.121	Poecilia_formosa
ENSCLAG00000002171	SMARCA1	92	82.924	ENSPLAG00000003363	smarca5	95	82.121	Poecilia_latipinna
ENSCLAG00000002171	SMARCA1	92	82.822	ENSPMEG00000019849	smarca5	95	82.020	Poecilia_mexicana
ENSCLAG00000002171	SMARCA1	92	82.822	ENSPREG00000023250	smarca5	95	82.020	Poecilia_reticulata
ENSCLAG00000002171	SMARCA1	98	94.412	ENSPPYG00000020703	SMARCA1	98	94.412	Pongo_abelii
ENSCLAG00000002171	SMARCA1	78	90.909	ENSPCOG00000020722	SMARCA1	94	91.777	Propithecus_coquereli
ENSCLAG00000002171	SMARCA1	92	96.556	ENSPVAG00000003805	SMARCA1	92	95.109	Pteropus_vampyrus
ENSCLAG00000002171	SMARCA1	56	83.288	ENSPNYG00000012299	smarca5	92	82.133	Pundamilia_nyererei
ENSCLAG00000002171	SMARCA1	100	95.274	ENSRNOG00000003762	Smarca1	98	95.376	Rattus_norvegicus
ENSCLAG00000002171	SMARCA1	100	96.975	ENSRROG00000034167	SMARCA1	100	96.975	Rhinopithecus_roxellana
ENSCLAG00000002171	SMARCA1	96	95.428	ENSSBOG00000020641	SMARCA1	100	97.959	Saimiri_boliviensis_boliviensis
ENSCLAG00000002171	SMARCA1	92	86.331	ENSSHAG00000013518	SMARCA1	99	86.331	Sarcophilus_harrisii
ENSCLAG00000002171	SMARCA1	98	84.682	ENSSFOG00015009043	smarca1	98	86.787	Scleropages_formosus
ENSCLAG00000002171	SMARCA1	94	81.754	ENSSFOG00015016794	smarca5	100	82.784	Scleropages_formosus
ENSCLAG00000002171	SMARCA1	93	81.966	ENSSMAG00000004801	smarca5	95	81.966	Scophthalmus_maximus
ENSCLAG00000002171	SMARCA1	93	82.485	ENSSDUG00000020690	smarca5	96	81.919	Seriola_dumerili
ENSCLAG00000002171	SMARCA1	93	82.485	ENSSLDG00000025190	smarca5	96	81.919	Seriola_lalandi_dorsalis
ENSCLAG00000002171	SMARCA1	87	90.399	ENSSARG00000000842	SMARCA1	92	90.399	Sorex_araneus
ENSCLAG00000002171	SMARCA1	97	88.121	ENSSPUG00000000590	SMARCA1	94	91.385	Sphenodon_punctatus
ENSCLAG00000002171	SMARCA1	93	82.587	ENSSPAG00000002894	smarca5	97	83.479	Stegastes_partitus
ENSCLAG00000002171	SMARCA1	98	96.339	ENSSSCG00000012649	SMARCA1	99	96.339	Sus_scrofa
ENSCLAG00000002171	SMARCA1	93	91.650	ENSTGUG00000003899	-	100	91.650	Taeniopygia_guttata
ENSCLAG00000002171	SMARCA1	93	82.892	ENSTRUG00000014094	smarca5	95	82.323	Takifugu_rubripes
ENSCLAG00000002171	SMARCA1	92	82.070	ENSTNIG00000017717	smarca5	94	81.212	Tetraodon_nigroviridis
ENSCLAG00000002171	SMARCA1	94	90.663	ENSTBEG00000014973	SMARCA1	99	90.653	Tupaia_belangeri
ENSCLAG00000002171	SMARCA1	94	94.343	ENSTTRG00000006168	SMARCA1	100	94.343	Tursiops_truncatus
ENSCLAG00000002171	SMARCA1	100	96.125	ENSUAMG00000020201	SMARCA1	100	96.125	Ursus_americanus
ENSCLAG00000002171	SMARCA1	94	92.901	ENSUMAG00000004073	SMARCA1	97	97.080	Ursus_maritimus
ENSCLAG00000002171	SMARCA1	79	98.413	ENSVPAG00000010492	-	86	98.413	Vicugna_pacos
ENSCLAG00000002171	SMARCA1	95	97.400	ENSVVUG00000008878	SMARCA1	99	97.597	Vulpes_vulpes
ENSCLAG00000002171	SMARCA1	94	88.655	ENSXETG00000001526	smarca1	99	88.655	Xenopus_tropicalis
ENSCLAG00000002171	SMARCA1	93	82.587	ENSXCOG00000011170	smarca5	98	82.020	Xiphophorus_couchianus
ENSCLAG00000002171	SMARCA1	93	82.587	ENSXMAG00000009678	smarca5	97	84.211	Xiphophorus_maculatus