EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCLAG00000002838 (Gene tree)
Gene ID: 102016920
Gene Symbol: SMNDC1
Alias: SMNR|SPF30|TDRD16C
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Plus strand
Length: 11744 bases
Position: chrJH721945.1:1070236-1081979
Accession: 102016920
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000003978	SMN	PF06003.12	4.3e-16	1	1
ENSCLAP00000003979	SMN	PF06003.12	4.3e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000004059	SMNDC1-202	1777	XM_005403757	ENSCLAP00000003979	238 (aa)	XP_005403814	UPI00038EE443
ENSCLAT00000004058	SMNDC1-201	1322	-	ENSCLAP00000003978	238 (aa)	-	UPI00038EE443

Gene Model

Click here to download ENSCLAG00000002838's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000002838's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000002838	SMNDC1	100	98.319	ENSG00000119953	SMNDC1	100	98.319	Homo_sapiens
ENSCLAG00000002838	SMNDC1	100	76.151	ENSAPOG00000021772	smndc1	100	74.790	Acanthochromis_polyacanthus
ENSCLAG00000002838	SMNDC1	100	98.739	ENSAMEG00000005251	SMNDC1	100	98.739	Ailuropoda_melanoleuca
ENSCLAG00000002838	SMNDC1	100	75.630	ENSACIG00000004819	smndc1	100	75.630	Amphilophus_citrinellus
ENSCLAG00000002838	SMNDC1	100	76.151	ENSAOCG00000017869	smndc1	100	74.790	Amphiprion_ocellaris
ENSCLAG00000002838	SMNDC1	100	76.151	ENSAPEG00000007752	smndc1	100	74.790	Amphiprion_percula
ENSCLAG00000002838	SMNDC1	100	76.050	ENSATEG00000006830	smndc1	100	76.050	Anabas_testudineus
ENSCLAG00000002838	SMNDC1	83	95.455	ENSAPLG00000004322	SMNDC1	100	95.455	Anas_platyrhynchos
ENSCLAG00000002838	SMNDC1	100	94.958	ENSACAG00000005983	SMNDC1	100	94.958	Anolis_carolinensis
ENSCLAG00000002838	SMNDC1	100	98.739	ENSANAG00000032875	SMNDC1	100	98.739	Aotus_nancymaae
ENSCLAG00000002838	SMNDC1	100	76.050	ENSACLG00000016360	smndc1	100	76.050	Astatotilapia_calliptera
ENSCLAG00000002838	SMNDC1	100	76.050	ENSAMXG00000020310	smndc1	100	76.050	Astyanax_mexicanus
ENSCLAG00000002838	SMNDC1	100	98.319	ENSBTAG00000000551	SMNDC1	100	98.319	Bos_taurus
ENSCLAG00000002838	SMNDC1	100	98.739	ENSCJAG00000018624	SMNDC1	100	98.739	Callithrix_jacchus
ENSCLAG00000002838	SMNDC1	100	98.739	ENSCAFG00000010720	SMNDC1	100	98.739	Canis_familiaris
ENSCLAG00000002838	SMNDC1	100	98.739	ENSCAFG00020011913	SMNDC1	100	98.739	Canis_lupus_dingo
ENSCLAG00000002838	SMNDC1	100	98.319	ENSCHIG00000010604	SMNDC1	100	98.319	Capra_hircus
ENSCLAG00000002838	SMNDC1	100	98.739	ENSTSYG00000026454	SMNDC1	100	98.739	Carlito_syrichta
ENSCLAG00000002838	SMNDC1	100	84.583	ENSCAPG00000009132	SMNDC1	100	99.502	Cavia_aperea
ENSCLAG00000002838	SMNDC1	100	99.580	ENSCPOG00000031666	SMNDC1	100	99.580	Cavia_porcellus
ENSCLAG00000002838	SMNDC1	100	98.739	ENSCCAG00000021793	SMNDC1	100	98.739	Cebus_capucinus
ENSCLAG00000002838	SMNDC1	100	98.319	ENSCATG00000035910	SMNDC1	100	98.319	Cercocebus_atys
ENSCLAG00000002838	SMNDC1	100	98.739	ENSCSAG00000005169	SMNDC1	100	98.739	Chlorocebus_sabaeus
ENSCLAG00000002838	SMNDC1	81	97.927	ENSCHOG00000002936	SMNDC1	100	97.927	Choloepus_hoffmanni
ENSCLAG00000002838	SMNDC1	100	97.059	ENSCPBG00000012837	SMNDC1	100	97.059	Chrysemys_picta_bellii
ENSCLAG00000002838	SMNDC1	100	90.756	ENSCANG00000034620	-	100	90.756	Colobus_angolensis_palliatus
ENSCLAG00000002838	SMNDC1	100	77.731	ENSCANG00000036994	-	100	77.731	Colobus_angolensis_palliatus
ENSCLAG00000002838	SMNDC1	100	98.739	ENSCANG00000031720	-	100	98.739	Colobus_angolensis_palliatus
ENSCLAG00000002838	SMNDC1	100	97.899	ENSCGRG00001012973	Smndc1	100	97.899	Cricetulus_griseus_chok1gshd
ENSCLAG00000002838	SMNDC1	100	97.899	ENSCGRG00000012396	Smndc1	100	97.899	Cricetulus_griseus_crigri
ENSCLAG00000002838	SMNDC1	100	75.630	ENSCSEG00000015621	smndc1	100	75.630	Cynoglossus_semilaevis
ENSCLAG00000002838	SMNDC1	100	76.471	ENSCVAG00000020432	smndc1	100	76.471	Cyprinodon_variegatus
ENSCLAG00000002838	SMNDC1	100	79.412	ENSDARG00000056235	smndc1	100	79.412	Danio_rerio
ENSCLAG00000002838	SMNDC1	100	98.739	ENSDNOG00000016387	SMNDC1	83	98.739	Dasypus_novemcinctus
ENSCLAG00000002838	SMNDC1	100	98.739	ENSDORG00000023715	Smndc1	100	98.739	Dipodomys_ordii
ENSCLAG00000002838	SMNDC1	95	41.767	FBgn0039977	CG17454	98	42.972	Drosophila_melanogaster
ENSCLAG00000002838	SMNDC1	100	71.784	ENSEBUG00000010929	smndc1	100	71.784	Eptatretus_burgeri
ENSCLAG00000002838	SMNDC1	100	98.739	ENSEASG00005014930	SMNDC1	100	98.739	Equus_asinus_asinus
ENSCLAG00000002838	SMNDC1	100	98.739	ENSECAG00000029973	SMNDC1	100	98.739	Equus_caballus
ENSCLAG00000002838	SMNDC1	83	69.697	ENSEEUG00000013407	-	100	69.697	Erinaceus_europaeus
ENSCLAG00000002838	SMNDC1	100	77.311	ENSELUG00000000227	smndc1	100	77.311	Esox_lucius
ENSCLAG00000002838	SMNDC1	100	98.739	ENSFCAG00000027353	SMNDC1	100	98.739	Felis_catus
ENSCLAG00000002838	SMNDC1	100	95.378	ENSFALG00000002306	SMNDC1	100	95.378	Ficedula_albicollis
ENSCLAG00000002838	SMNDC1	100	99.160	ENSFDAG00000006468	SMNDC1	100	99.160	Fukomys_damarensis
ENSCLAG00000002838	SMNDC1	100	76.050	ENSFHEG00000020150	smndc1	100	76.050	Fundulus_heteroclitus
ENSCLAG00000002838	SMNDC1	100	76.471	ENSGMOG00000016585	smndc1	100	76.471	Gadus_morhua
ENSCLAG00000002838	SMNDC1	100	95.378	ENSGALG00000008561	SMNDC1	100	95.378	Gallus_gallus
ENSCLAG00000002838	SMNDC1	100	75.210	ENSGAFG00000011582	smndc1	100	75.210	Gambusia_affinis
ENSCLAG00000002838	SMNDC1	100	75.630	ENSGACG00000009468	smndc1	100	75.630	Gasterosteus_aculeatus
ENSCLAG00000002838	SMNDC1	100	97.059	ENSGAGG00000024547	SMNDC1	100	97.059	Gopherus_agassizii
ENSCLAG00000002838	SMNDC1	100	98.739	ENSGGOG00000010071	SMNDC1	100	98.739	Gorilla_gorilla
ENSCLAG00000002838	SMNDC1	100	76.050	ENSHBUG00000017596	smndc1	100	76.050	Haplochromis_burtoni
ENSCLAG00000002838	SMNDC1	100	99.160	ENSHGLG00000013390	-	100	99.160	Heterocephalus_glaber_female
ENSCLAG00000002838	SMNDC1	100	68.033	ENSHGLG00000001157	-	100	64.490	Heterocephalus_glaber_female
ENSCLAG00000002838	SMNDC1	100	77.049	ENSHGLG00100004278	-	100	76.639	Heterocephalus_glaber_male
ENSCLAG00000002838	SMNDC1	100	99.160	ENSHGLG00100004814	-	100	99.160	Heterocephalus_glaber_male
ENSCLAG00000002838	SMNDC1	100	74.895	ENSHCOG00000000783	smndc1	100	74.895	Hippocampus_comes
ENSCLAG00000002838	SMNDC1	100	77.311	ENSIPUG00000004217	smndc1	100	77.311	Ictalurus_punctatus
ENSCLAG00000002838	SMNDC1	100	98.739	ENSSTOG00000006088	SMNDC1	100	98.739	Ictidomys_tridecemlineatus
ENSCLAG00000002838	SMNDC1	100	98.739	ENSJJAG00000019974	Smndc1	100	98.739	Jaculus_jaculus
ENSCLAG00000002838	SMNDC1	100	75.210	ENSKMAG00000020134	smndc1	100	75.210	Kryptolebias_marmoratus
ENSCLAG00000002838	SMNDC1	100	74.790	ENSLBEG00000004598	smndc1	100	74.790	Labrus_bergylta
ENSCLAG00000002838	SMNDC1	100	83.613	ENSLACG00000007784	SMNDC1	100	83.613	Latimeria_chalumnae
ENSCLAG00000002838	SMNDC1	100	84.454	ENSLOCG00000012355	smndc1	100	84.454	Lepisosteus_oculatus
ENSCLAG00000002838	SMNDC1	100	98.319	ENSLAFG00000014353	SMNDC1	100	98.319	Loxodonta_africana
ENSCLAG00000002838	SMNDC1	100	98.739	ENSMFAG00000002433	-	100	98.739	Macaca_fascicularis
ENSCLAG00000002838	SMNDC1	100	81.092	ENSMFAG00000038381	-	100	81.092	Macaca_fascicularis
ENSCLAG00000002838	SMNDC1	100	81.092	ENSMMUG00000045875	-	100	81.092	Macaca_mulatta
ENSCLAG00000002838	SMNDC1	100	98.739	ENSMMUG00000007775	SMNDC1	100	98.739	Macaca_mulatta
ENSCLAG00000002838	SMNDC1	100	86.975	ENSMNEG00000033853	-	100	86.975	Macaca_nemestrina
ENSCLAG00000002838	SMNDC1	100	98.739	ENSMNEG00000042963	-	100	98.739	Macaca_nemestrina
ENSCLAG00000002838	SMNDC1	100	92.469	ENSMLEG00000040236	SMNDC1	100	92.050	Mandrillus_leucophaeus
ENSCLAG00000002838	SMNDC1	89	73.239	ENSMAMG00000018233	smndc1	87	73.239	Mastacembelus_armatus
ENSCLAG00000002838	SMNDC1	100	76.050	ENSMZEG00005027510	smndc1	100	76.050	Maylandia_zebra
ENSCLAG00000002838	SMNDC1	84	95.000	ENSMGAG00000010777	SMNDC1	84	95.000	Meleagris_gallopavo
ENSCLAG00000002838	SMNDC1	100	98.739	ENSMAUG00000012243	-	100	98.739	Mesocricetus_auratus
ENSCLAG00000002838	SMNDC1	99	80.169	ENSMAUG00000005459	-	93	80.169	Mesocricetus_auratus
ENSCLAG00000002838	SMNDC1	100	86.134	ENSMICG00000031640	-	100	86.134	Microcebus_murinus
ENSCLAG00000002838	SMNDC1	100	98.739	ENSMICG00000027336	-	100	98.739	Microcebus_murinus
ENSCLAG00000002838	SMNDC1	100	98.319	ENSMOCG00000002458	Smndc1	100	98.319	Microtus_ochrogaster
ENSCLAG00000002838	SMNDC1	100	76.050	ENSMMOG00000008856	smndc1	100	76.050	Mola_mola
ENSCLAG00000002838	SMNDC1	100	98.319	ENSMODG00000010542	SMNDC1	100	98.319	Monodelphis_domestica
ENSCLAG00000002838	SMNDC1	100	76.471	ENSMALG00000017598	smndc1	100	76.471	Monopterus_albus
ENSCLAG00000002838	SMNDC1	100	98.319	MGP_CAROLIEiJ_G0023072	Smndc1	100	98.319	Mus_caroli
ENSCLAG00000002838	SMNDC1	100	97.899	ENSMUSG00000025024	Smndc1	100	97.899	Mus_musculus
ENSCLAG00000002838	SMNDC1	100	97.899	MGP_PahariEiJ_G0014560	Smndc1	100	97.899	Mus_pahari
ENSCLAG00000002838	SMNDC1	100	97.899	MGP_SPRETEiJ_G0023993	Smndc1	100	97.899	Mus_spretus
ENSCLAG00000002838	SMNDC1	100	98.739	ENSMPUG00000002089	SMNDC1	100	98.739	Mustela_putorius_furo
ENSCLAG00000002838	SMNDC1	100	98.739	ENSMLUG00000016007	SMNDC1	100	98.739	Myotis_lucifugus
ENSCLAG00000002838	SMNDC1	100	98.319	ENSNGAG00000006833	Smndc1	100	98.319	Nannospalax_galili
ENSCLAG00000002838	SMNDC1	100	75.630	ENSNBRG00000017089	smndc1	100	75.630	Neolamprologus_brichardi
ENSCLAG00000002838	SMNDC1	100	98.739	ENSNLEG00000015471	SMNDC1	100	98.739	Nomascus_leucogenys
ENSCLAG00000002838	SMNDC1	82	58.000	ENSMEUG00000010120	-	99	58.500	Notamacropus_eugenii
ENSCLAG00000002838	SMNDC1	100	99.580	ENSOPRG00000015348	SMNDC1	100	99.580	Ochotona_princeps
ENSCLAG00000002838	SMNDC1	100	69.328	ENSODEG00000007594	-	100	66.387	Octodon_degus
ENSCLAG00000002838	SMNDC1	100	75.630	ENSONIG00000000434	smndc1	100	75.630	Oreochromis_niloticus
ENSCLAG00000002838	SMNDC1	100	97.899	ENSOANG00000001598	SMNDC1	100	97.899	Ornithorhynchus_anatinus
ENSCLAG00000002838	SMNDC1	100	98.739	ENSOCUG00000008145	-	100	98.739	Oryctolagus_cuniculus
ENSCLAG00000002838	SMNDC1	100	74.790	ENSOCUG00000012274	-	100	76.471	Oryctolagus_cuniculus
ENSCLAG00000002838	SMNDC1	100	76.050	ENSORLG00000005934	smndc1	95	76.050	Oryzias_latipes
ENSCLAG00000002838	SMNDC1	100	76.050	ENSORLG00020008796	smndc1	95	76.050	Oryzias_latipes_hni
ENSCLAG00000002838	SMNDC1	100	76.050	ENSORLG00015013666	smndc1	100	76.050	Oryzias_latipes_hsok
ENSCLAG00000002838	SMNDC1	100	77.731	ENSOMEG00000007590	smndc1	100	77.731	Oryzias_melastigma
ENSCLAG00000002838	SMNDC1	100	98.319	ENSOGAG00000000571	SMNDC1	100	98.319	Otolemur_garnettii
ENSCLAG00000002838	SMNDC1	100	98.319	ENSOARG00000009500	SMNDC1	100	98.319	Ovis_aries
ENSCLAG00000002838	SMNDC1	100	98.739	ENSPPAG00000027815	SMNDC1	100	98.739	Pan_paniscus
ENSCLAG00000002838	SMNDC1	100	98.739	ENSPPRG00000013749	SMNDC1	100	98.739	Panthera_pardus
ENSCLAG00000002838	SMNDC1	100	98.739	ENSPTIG00000011451	SMNDC1	100	98.739	Panthera_tigris_altaica
ENSCLAG00000002838	SMNDC1	100	98.739	ENSPTRG00000002937	SMNDC1	100	98.739	Pan_troglodytes
ENSCLAG00000002838	SMNDC1	100	98.739	ENSPANG00000020805	-	100	98.739	Papio_anubis
ENSCLAG00000002838	SMNDC1	100	92.857	ENSPANG00000031346	-	100	92.857	Papio_anubis
ENSCLAG00000002838	SMNDC1	100	80.672	ENSPKIG00000017164	smndc1	100	80.672	Paramormyrops_kingsleyae
ENSCLAG00000002838	SMNDC1	100	96.639	ENSPSIG00000012257	SMNDC1	100	96.639	Pelodiscus_sinensis
ENSCLAG00000002838	SMNDC1	100	73.529	ENSPMGG00000015651	smndc1	100	73.529	Periophthalmus_magnuspinnatus
ENSCLAG00000002838	SMNDC1	100	98.739	ENSPEMG00000022058	Smndc1	100	98.739	Peromyscus_maniculatus_bairdii
ENSCLAG00000002838	SMNDC1	100	67.623	ENSPMAG00000007705	smndc1	100	67.623	Petromyzon_marinus
ENSCLAG00000002838	SMNDC1	100	98.319	ENSPCIG00000018419	SMNDC1	100	98.319	Phascolarctos_cinereus
ENSCLAG00000002838	SMNDC1	97	63.478	ENSPCIG00000009693	-	100	63.478	Phascolarctos_cinereus
ENSCLAG00000002838	SMNDC1	100	75.630	ENSPFOG00000017113	smndc1	100	75.630	Poecilia_formosa
ENSCLAG00000002838	SMNDC1	100	76.050	ENSPLAG00000010372	smndc1	100	76.050	Poecilia_latipinna
ENSCLAG00000002838	SMNDC1	100	76.050	ENSPMEG00000012288	smndc1	100	76.050	Poecilia_mexicana
ENSCLAG00000002838	SMNDC1	100	75.210	ENSPREG00000012279	smndc1	100	75.210	Poecilia_reticulata
ENSCLAG00000002838	SMNDC1	100	98.739	ENSPPYG00000002643	SMNDC1	100	98.739	Pongo_abelii
ENSCLAG00000002838	SMNDC1	81	96.891	ENSPCAG00000016183	SMNDC1	100	96.891	Procavia_capensis
ENSCLAG00000002838	SMNDC1	100	98.319	ENSPCOG00000024343	SMNDC1	100	98.319	Propithecus_coquereli
ENSCLAG00000002838	SMNDC1	100	76.050	ENSPVAG00000004368	SMNDC1	100	76.050	Pteropus_vampyrus
ENSCLAG00000002838	SMNDC1	92	69.778	ENSPNYG00000024093	smndc1	86	75.758	Pundamilia_nyererei
ENSCLAG00000002838	SMNDC1	100	76.050	ENSPNAG00000025285	smndc1	100	76.050	Pygocentrus_nattereri
ENSCLAG00000002838	SMNDC1	100	98.319	ENSRNOG00000014833	Smndc1	100	98.319	Rattus_norvegicus
ENSCLAG00000002838	SMNDC1	100	82.353	ENSRBIG00000032452	-	100	82.353	Rhinopithecus_bieti
ENSCLAG00000002838	SMNDC1	100	98.319	ENSRBIG00000000224	-	100	98.319	Rhinopithecus_bieti
ENSCLAG00000002838	SMNDC1	100	82.773	ENSRROG00000039125	-	100	82.773	Rhinopithecus_roxellana
ENSCLAG00000002838	SMNDC1	100	98.739	ENSRROG00000044992	-	100	98.739	Rhinopithecus_roxellana
ENSCLAG00000002838	SMNDC1	100	98.739	ENSSBOG00000026789	SMNDC1	100	98.739	Saimiri_boliviensis_boliviensis
ENSCLAG00000002838	SMNDC1	100	98.319	ENSSHAG00000015189	SMNDC1	100	98.319	Sarcophilus_harrisii
ENSCLAG00000002838	SMNDC1	100	80.252	ENSSFOG00015008311	smndc1	100	80.252	Scleropages_formosus
ENSCLAG00000002838	SMNDC1	100	76.050	ENSSMAG00000020118	smndc1	100	76.050	Scophthalmus_maximus
ENSCLAG00000002838	SMNDC1	100	76.471	ENSSDUG00000015330	smndc1	100	76.471	Seriola_dumerili
ENSCLAG00000002838	SMNDC1	100	76.471	ENSSLDG00000017325	smndc1	100	76.471	Seriola_lalandi_dorsalis
ENSCLAG00000002838	SMNDC1	100	99.580	ENSSARG00000006063	SMNDC1	100	99.580	Sorex_araneus
ENSCLAG00000002838	SMNDC1	100	95.378	ENSSPUG00000004574	SMNDC1	100	95.378	Sphenodon_punctatus
ENSCLAG00000002838	SMNDC1	100	75.732	ENSSPAG00000000338	smndc1	100	75.732	Stegastes_partitus
ENSCLAG00000002838	SMNDC1	100	99.160	ENSSSCG00000030507	SMNDC1	100	99.160	Sus_scrofa
ENSCLAG00000002838	SMNDC1	100	95.378	ENSTGUG00000010599	SMNDC1	100	95.378	Taeniopygia_guttata
ENSCLAG00000002838	SMNDC1	100	73.950	ENSTRUG00000023281	smndc1	100	73.950	Takifugu_rubripes
ENSCLAG00000002838	SMNDC1	100	75.210	ENSTNIG00000013331	smndc1	100	75.210	Tetraodon_nigroviridis
ENSCLAG00000002838	SMNDC1	100	99.160	ENSTBEG00000014337	SMNDC1	100	99.160	Tupaia_belangeri
ENSCLAG00000002838	SMNDC1	100	98.739	ENSUAMG00000008142	SMNDC1	100	98.739	Ursus_americanus
ENSCLAG00000002838	SMNDC1	100	98.739	ENSUMAG00000023722	SMNDC1	100	98.739	Ursus_maritimus
ENSCLAG00000002838	SMNDC1	83	98.485	ENSVPAG00000003402	SMNDC1	100	98.485	Vicugna_pacos
ENSCLAG00000002838	SMNDC1	100	98.739	ENSVVUG00000007820	SMNDC1	100	98.739	Vulpes_vulpes
ENSCLAG00000002838	SMNDC1	60	80.986	ENSXETG00000015415	SMNDC1	100	80.986	Xenopus_tropicalis
ENSCLAG00000002838	SMNDC1	100	75.210	ENSXCOG00000009159	smndc1	100	75.210	Xiphophorus_couchianus
ENSCLAG00000002838	SMNDC1	100	74.790	ENSXMAG00000012755	smndc1	100	74.790	Xiphophorus_maculatus