EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCLAG00000003376 (Gene tree)
Gene ID: 102024416
Gene Symbol: LIG4
Alias: -
Full Name: DNA ligase 4
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Plus strand
Length: 9117 bases
Position: chrJH721864.1:3606077-3615193
Accession: 102024416
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000004753	RNA_ligase	PF09414.10	2.3e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000004841	LIG4-201	5387	XM_005374013	ENSCLAP00000004753	911 (aa)	XP_005374070	UPI00038ECE26

Gene Model

Click here to download ENSCLAG00000003376's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000003376's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000003376	LIG4	100	89.682	ENSG00000174405	LIG4	100	89.682	Homo_sapiens
ENSCLAG00000003376	LIG4	99	65.313	ENSAPOG00000000866	lig4	99	65.532	Acanthochromis_polyacanthus
ENSCLAG00000003376	LIG4	100	87.267	ENSAMEG00000019685	LIG4	99	87.267	Ailuropoda_melanoleuca
ENSCLAG00000003376	LIG4	99	65.897	ENSACIG00000018309	lig4	99	66.117	Amphilophus_citrinellus
ENSCLAG00000003376	LIG4	99	65.265	ENSAOCG00000011768	lig4	99	65.487	Amphiprion_ocellaris
ENSCLAG00000003376	LIG4	99	65.376	ENSAPEG00000017815	lig4	99	65.597	Amphiprion_percula
ENSCLAG00000003376	LIG4	99	65.055	ENSATEG00000005583	lig4	99	65.165	Anabas_testudineus
ENSCLAG00000003376	LIG4	97	74.432	ENSAPLG00000001673	LIG4	99	74.432	Anas_platyrhynchos
ENSCLAG00000003376	LIG4	99	74.751	ENSACAG00000014566	LIG4	99	74.751	Anolis_carolinensis
ENSCLAG00000003376	LIG4	100	89.023	ENSANAG00000012446	LIG4	100	89.023	Aotus_nancymaae
ENSCLAG00000003376	LIG4	99	65.525	ENSACLG00000027051	lig4	98	65.854	Astatotilapia_calliptera
ENSCLAG00000003376	LIG4	99	65.304	ENSAMXG00000008192	lig4	93	65.304	Astyanax_mexicanus
ENSCLAG00000003376	LIG4	100	87.486	ENSBTAG00000015868	LIG4	100	87.486	Bos_taurus
ENSCLAG00000003376	LIG4	100	88.364	ENSCJAG00000014689	LIG4	100	88.364	Callithrix_jacchus
ENSCLAG00000003376	LIG4	100	88.694	ENSCAFG00000006031	LIG4	100	88.694	Canis_familiaris
ENSCLAG00000003376	LIG4	100	88.694	ENSCAFG00020021230	LIG4	100	88.694	Canis_lupus_dingo
ENSCLAG00000003376	LIG4	100	87.267	ENSCHIG00000001019	LIG4	100	87.267	Capra_hircus
ENSCLAG00000003376	LIG4	99	93.577	ENSCAPG00000006284	LIG4	99	93.577	Cavia_aperea
ENSCLAG00000003376	LIG4	100	93.304	ENSCPOG00000014266	LIG4	100	93.304	Cavia_porcellus
ENSCLAG00000003376	LIG4	100	88.584	ENSCCAG00000019971	LIG4	100	88.584	Cebus_capucinus
ENSCLAG00000003376	LIG4	100	88.804	ENSCATG00000021075	LIG4	100	88.804	Cercocebus_atys
ENSCLAG00000003376	LIG4	100	89.023	ENSCSAG00000000211	LIG4	100	89.023	Chlorocebus_sabaeus
ENSCLAG00000003376	LIG4	99	77.704	ENSCPBG00000023291	LIG4	99	77.303	Chrysemys_picta_bellii
ENSCLAG00000003376	LIG4	68	46.667	ENSCING00000009536	-	96	46.667	Ciona_intestinalis
ENSCLAG00000003376	LIG4	83	46.928	ENSCSAVG00000010336	-	99	46.928	Ciona_savignyi
ENSCLAG00000003376	LIG4	100	89.023	ENSCANG00000005805	LIG4	100	89.023	Colobus_angolensis_palliatus
ENSCLAG00000003376	LIG4	100	86.513	ENSCGRG00001012072	Lig4	100	86.513	Cricetulus_griseus_chok1gshd
ENSCLAG00000003376	LIG4	100	86.513	ENSCGRG00000013417	Lig4	100	86.513	Cricetulus_griseus_crigri
ENSCLAG00000003376	LIG4	97	65.459	ENSCSEG00000013905	lig4	95	65.459	Cynoglossus_semilaevis
ENSCLAG00000003376	LIG4	99	65.351	ENSCVAG00000007896	lig4	99	65.351	Cyprinodon_variegatus
ENSCLAG00000003376	LIG4	99	64.745	ENSDARG00000060620	lig4	98	64.745	Danio_rerio
ENSCLAG00000003376	LIG4	100	86.732	ENSDNOG00000000513	LIG4	100	86.732	Dasypus_novemcinctus
ENSCLAG00000003376	LIG4	100	87.047	ENSDORG00000027303	Lig4	100	87.047	Dipodomys_ordii
ENSCLAG00000003376	LIG4	89	31.733	FBgn0030506	Lig4	91	31.733	Drosophila_melanogaster
ENSCLAG00000003376	LIG4	99	83.370	ENSETEG00000015563	LIG4	100	83.703	Echinops_telfairi
ENSCLAG00000003376	LIG4	99	43.750	ENSEBUG00000014243	lig4	98	43.750	Eptatretus_burgeri
ENSCLAG00000003376	LIG4	100	88.145	ENSEASG00005022073	LIG4	100	88.145	Equus_asinus_asinus
ENSCLAG00000003376	LIG4	100	87.816	ENSECAG00000003257	LIG4	100	87.816	Equus_caballus
ENSCLAG00000003376	LIG4	99	65.711	ENSELUG00000006787	lig4	99	65.821	Esox_lucius
ENSCLAG00000003376	LIG4	100	88.145	ENSFCAG00000031985	LIG4	100	88.145	Felis_catus
ENSCLAG00000003376	LIG4	89	74.908	ENSFALG00000004214	LIG4	98	74.908	Ficedula_albicollis
ENSCLAG00000003376	LIG4	100	92.206	ENSFDAG00000008973	LIG4	100	92.206	Fukomys_damarensis
ENSCLAG00000003376	LIG4	99	65.449	ENSFHEG00000007398	lig4	89	65.449	Fundulus_heteroclitus
ENSCLAG00000003376	LIG4	85	64.221	ENSGMOG00000012843	lig4	99	64.221	Gadus_morhua
ENSCLAG00000003376	LIG4	99	74.226	ENSGALG00000016854	LIG4	99	74.226	Gallus_gallus
ENSCLAG00000003376	LIG4	99	65.590	ENSGAFG00000019779	lig4	95	65.385	Gambusia_affinis
ENSCLAG00000003376	LIG4	99	63.656	ENSGACG00000014135	lig4	99	63.656	Gasterosteus_aculeatus
ENSCLAG00000003376	LIG4	100	89.572	ENSGGOG00000027771	LIG4	100	89.572	Gorilla_gorilla
ENSCLAG00000003376	LIG4	99	65.304	ENSHBUG00000006245	lig4	98	65.632	Haplochromis_burtoni
ENSCLAG00000003376	LIG4	100	92.975	ENSHGLG00000000718	LIG4	100	92.975	Heterocephalus_glaber_female
ENSCLAG00000003376	LIG4	100	92.975	ENSHGLG00100003265	LIG4	100	92.975	Heterocephalus_glaber_male
ENSCLAG00000003376	LIG4	99	64.505	ENSHCOG00000012010	lig4	99	64.505	Hippocampus_comes
ENSCLAG00000003376	LIG4	99	65.338	ENSIPUG00000013748	lig4	98	65.338	Ictalurus_punctatus
ENSCLAG00000003376	LIG4	100	88.804	ENSSTOG00000024303	LIG4	100	88.804	Ictidomys_tridecemlineatus
ENSCLAG00000003376	LIG4	100	86.279	ENSJJAG00000006750	Lig4	100	86.279	Jaculus_jaculus
ENSCLAG00000003376	LIG4	99	64.978	ENSKMAG00000001149	lig4	99	64.978	Kryptolebias_marmoratus
ENSCLAG00000003376	LIG4	91	65.588	ENSLBEG00000014578	lig4	100	65.827	Labrus_bergylta
ENSCLAG00000003376	LIG4	99	72.235	ENSLACG00000003282	LIG4	99	72.235	Latimeria_chalumnae
ENSCLAG00000003376	LIG4	99	69.956	ENSLOCG00000008901	lig4	98	69.956	Lepisosteus_oculatus
ENSCLAG00000003376	LIG4	100	85.761	ENSLAFG00000031152	LIG4	100	85.761	Loxodonta_africana
ENSCLAG00000003376	LIG4	100	88.804	ENSMFAG00000037235	LIG4	100	88.804	Macaca_fascicularis
ENSCLAG00000003376	LIG4	100	88.804	ENSMMUG00000008874	LIG4	100	88.804	Macaca_mulatta
ENSCLAG00000003376	LIG4	100	88.804	ENSMNEG00000023575	LIG4	100	88.804	Macaca_nemestrina
ENSCLAG00000003376	LIG4	100	88.804	ENSMLEG00000026720	LIG4	100	88.804	Mandrillus_leucophaeus
ENSCLAG00000003376	LIG4	99	65.824	ENSMAMG00000008472	lig4	99	66.044	Mastacembelus_armatus
ENSCLAG00000003376	LIG4	99	65.854	ENSMZEG00005001855	lig4	98	65.854	Maylandia_zebra
ENSCLAG00000003376	LIG4	100	73.908	ENSMGAG00000015532	LIG4	100	73.908	Meleagris_gallopavo
ENSCLAG00000003376	LIG4	100	84.523	ENSMOCG00000019000	Lig4	100	84.523	Microtus_ochrogaster
ENSCLAG00000003376	LIG4	99	64.537	ENSMMOG00000004390	lig4	99	64.537	Mola_mola
ENSCLAG00000003376	LIG4	100	81.888	ENSMODG00000025064	LIG4	100	82.237	Monodelphis_domestica
ENSCLAG00000003376	LIG4	99	65.227	ENSMALG00000008555	lig4	99	65.227	Monopterus_albus
ENSCLAG00000003376	LIG4	100	86.828	MGP_CAROLIEiJ_G0030809	Lig4	100	86.828	Mus_caroli
ENSCLAG00000003376	LIG4	100	86.718	ENSMUSG00000049717	Lig4	100	86.718	Mus_musculus
ENSCLAG00000003376	LIG4	100	86.389	MGP_PahariEiJ_G0021270	Lig4	100	86.389	Mus_pahari
ENSCLAG00000003376	LIG4	100	86.718	MGP_SPRETEiJ_G0031917	Lig4	100	86.718	Mus_spretus
ENSCLAG00000003376	LIG4	100	87.267	ENSMPUG00000018675	LIG4	100	87.267	Mustela_putorius_furo
ENSCLAG00000003376	LIG4	100	87.816	ENSMLUG00000001267	LIG4	100	87.816	Myotis_lucifugus
ENSCLAG00000003376	LIG4	100	86.828	ENSNGAG00000013258	Lig4	100	86.828	Nannospalax_galili
ENSCLAG00000003376	LIG4	99	65.567	ENSNBRG00000021252	lig4	99	65.567	Neolamprologus_brichardi
ENSCLAG00000003376	LIG4	100	89.243	ENSNLEG00000007888	LIG4	100	89.243	Nomascus_leucogenys
ENSCLAG00000003376	LIG4	100	85.401	ENSOPRG00000005765	LIG4	100	85.401	Ochotona_princeps
ENSCLAG00000003376	LIG4	100	92.536	ENSODEG00000019683	LIG4	100	92.536	Octodon_degus
ENSCLAG00000003376	LIG4	99	65.410	ENSONIG00000011969	lig4	97	65.743	Oreochromis_niloticus
ENSCLAG00000003376	LIG4	100	89.023	ENSOCUG00000015734	LIG4	100	89.023	Oryctolagus_cuniculus
ENSCLAG00000003376	LIG4	99	64.583	ENSORLG00000004041	lig4	99	64.693	Oryzias_latipes
ENSCLAG00000003376	LIG4	99	65.022	ENSORLG00020019607	lig4	99	65.132	Oryzias_latipes_hni
ENSCLAG00000003376	LIG4	99	64.693	ENSORLG00015017754	lig4	99	64.803	Oryzias_latipes_hsok
ENSCLAG00000003376	LIG4	75	69.706	ENSOMEG00000003459	lig4	99	69.706	Oryzias_melastigma
ENSCLAG00000003376	LIG4	100	87.829	ENSOGAG00000032120	LIG4	99	87.829	Otolemur_garnettii
ENSCLAG00000003376	LIG4	82	88.859	ENSOARG00000005590	LIG4	98	88.859	Ovis_aries
ENSCLAG00000003376	LIG4	100	89.243	ENSPPAG00000032998	LIG4	100	89.243	Pan_paniscus
ENSCLAG00000003376	LIG4	100	88.474	ENSPPRG00000017804	LIG4	100	88.474	Panthera_pardus
ENSCLAG00000003376	LIG4	100	88.364	ENSPTIG00000010051	LIG4	100	88.364	Panthera_tigris_altaica
ENSCLAG00000003376	LIG4	100	89.352	ENSPTRG00000006025	LIG4	100	89.352	Pan_troglodytes
ENSCLAG00000003376	LIG4	100	88.913	ENSPANG00000007562	LIG4	100	88.913	Papio_anubis
ENSCLAG00000003376	LIG4	99	65.604	ENSPKIG00000011645	lig4	98	65.604	Paramormyrops_kingsleyae
ENSCLAG00000003376	LIG4	99	77.253	ENSPSIG00000001504	LIG4	99	77.253	Pelodiscus_sinensis
ENSCLAG00000003376	LIG4	99	64.000	ENSPMGG00000013486	lig4	99	63.557	Periophthalmus_magnuspinnatus
ENSCLAG00000003376	LIG4	100	85.855	ENSPEMG00000000076	Lig4	100	85.855	Peromyscus_maniculatus_bairdii
ENSCLAG00000003376	LIG4	100	82.456	ENSPCIG00000021882	LIG4	100	82.456	Phascolarctos_cinereus
ENSCLAG00000003376	LIG4	99	65.406	ENSPFOG00000000797	lig4	99	65.055	Poecilia_formosa
ENSCLAG00000003376	LIG4	99	65.295	ENSPLAG00000001196	lig4	99	64.945	Poecilia_latipinna
ENSCLAG00000003376	LIG4	99	65.406	ENSPMEG00000021353	lig4	99	65.165	Poecilia_mexicana
ENSCLAG00000003376	LIG4	99	65.072	ENSPREG00000007323	lig4	99	64.874	Poecilia_reticulata
ENSCLAG00000003376	LIG4	100	89.243	ENSPPYG00000005540	LIG4	100	89.243	Pongo_abelii
ENSCLAG00000003376	LIG4	100	88.255	ENSPVAG00000016403	LIG4	100	88.255	Pteropus_vampyrus
ENSCLAG00000003376	LIG4	99	65.743	ENSPNYG00000009660	lig4	98	65.743	Pundamilia_nyererei
ENSCLAG00000003376	LIG4	100	64.294	ENSPNAG00000028069	LIG4	100	64.294	Pygocentrus_nattereri
ENSCLAG00000003376	LIG4	100	64.294	ENSPNAG00000028056	lig4	100	64.294	Pygocentrus_nattereri
ENSCLAG00000003376	LIG4	100	85.071	ENSRNOG00000014605	Lig4	100	85.071	Rattus_norvegicus
ENSCLAG00000003376	LIG4	100	87.706	ENSRBIG00000039962	LIG4	100	87.706	Rhinopithecus_bieti
ENSCLAG00000003376	LIG4	100	88.913	ENSRROG00000006040	LIG4	100	88.913	Rhinopithecus_roxellana
ENSCLAG00000003376	LIG4	100	88.364	ENSSBOG00000019029	LIG4	100	88.364	Saimiri_boliviensis_boliviensis
ENSCLAG00000003376	LIG4	100	79.825	ENSSHAG00000009525	LIG4	100	79.825	Sarcophilus_harrisii
ENSCLAG00000003376	LIG4	99	65.967	ENSSFOG00015012835	lig4	99	65.967	Scleropages_formosus
ENSCLAG00000003376	LIG4	99	62.583	ENSSMAG00000011267	lig4	99	62.583	Scophthalmus_maximus
ENSCLAG00000003376	LIG4	99	65.639	ENSSDUG00000010343	lig4	99	65.639	Seriola_dumerili
ENSCLAG00000003376	LIG4	99	63.987	ENSSLDG00000003239	lig4	99	63.987	Seriola_lalandi_dorsalis
ENSCLAG00000003376	LIG4	100	82.057	ENSSARG00000006573	LIG4	100	82.057	Sorex_araneus
ENSCLAG00000003376	LIG4	93	76.540	ENSSPUG00000002444	LIG4	100	76.540	Sphenodon_punctatus
ENSCLAG00000003376	LIG4	99	65.275	ENSSPAG00000001609	lig4	99	65.275	Stegastes_partitus
ENSCLAG00000003376	LIG4	100	86.389	ENSSSCG00000009540	LIG4	100	86.389	Sus_scrofa
ENSCLAG00000003376	LIG4	99	74.668	ENSTGUG00000010795	LIG4	99	74.668	Taeniopygia_guttata
ENSCLAG00000003376	LIG4	99	65.116	ENSTRUG00000009984	lig4	99	65.116	Takifugu_rubripes
ENSCLAG00000003376	LIG4	99	66.113	ENSTNIG00000010348	lig4	99	66.334	Tetraodon_nigroviridis
ENSCLAG00000003376	LIG4	100	88.584	ENSTBEG00000017741	LIG4	100	88.584	Tupaia_belangeri
ENSCLAG00000003376	LIG4	100	87.816	ENSTTRG00000012660	LIG4	100	87.816	Tursiops_truncatus
ENSCLAG00000003376	LIG4	100	87.377	ENSUAMG00000003773	LIG4	100	87.377	Ursus_americanus
ENSCLAG00000003376	LIG4	99	71.035	ENSXETG00000002654	lig4	99	71.035	Xenopus_tropicalis
ENSCLAG00000003376	LIG4	99	65.184	ENSXCOG00000017401	lig4	99	64.725	Xiphophorus_couchianus
ENSCLAG00000003376	LIG4	99	65.556	ENSXMAG00000015142	lig4	99	65.093	Xiphophorus_maculatus