EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCLAG00000003655 (Gene tree)
Gene ID: 102027313
Gene Symbol: TARBP1
Alias: TRM3|TRMT3|TRP-185
Full Name: TAR (HIV-1) RNA binding protein 1
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Plus strand
Length: 59779 bases
Position: chrJH721952.1:5252999-5312777
Accession: 102027313
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000005148	SpoU_methylase	PF00588.19	9.6e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000005242	TARBP1-201	4059	XM_005404955	ENSCLAP00000005148	1352 (aa)	XP_005405012	-

Gene Model

Click here to download ENSCLAG00000003655's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000003655's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000003655	TARBP1	99	80.000	ENSG00000059588	TARBP1	83	80.000	Homo_sapiens
ENSCLAG00000003655	TARBP1	96	44.694	ENSAPOG00000016419	si:dkey-85a20.4	80	44.758	Acanthochromis_polyacanthus
ENSCLAG00000003655	TARBP1	96	79.756	ENSAMEG00000003359	TARBP1	96	79.526	Ailuropoda_melanoleuca
ENSCLAG00000003655	TARBP1	96	45.530	ENSATEG00000020266	si:dkey-85a20.4	80	45.079	Anabas_testudineus
ENSCLAG00000003655	TARBP1	96	64.307	ENSAPLG00000007666	TARBP1	99	64.198	Anas_platyrhynchos
ENSCLAG00000003655	TARBP1	95	59.768	ENSACAG00000001142	TARBP1	81	59.537	Anolis_carolinensis
ENSCLAG00000003655	TARBP1	98	77.500	ENSANAG00000022031	TARBP1	85	77.500	Aotus_nancymaae
ENSCLAG00000003655	TARBP1	99	88.889	ENSBTAG00000004517	TARBP1	83	88.889	Bos_taurus
ENSCLAG00000003655	TARBP1	99	80.000	ENSCJAG00000018155	TARBP1	83	80.000	Callithrix_jacchus
ENSCLAG00000003655	TARBP1	96	78.915	ENSCAFG00000011533	TARBP1	93	78.915	Canis_familiaris
ENSCLAG00000003655	TARBP1	99	78.976	ENSCAFG00020027141	TARBP1	83	78.976	Canis_lupus_dingo
ENSCLAG00000003655	TARBP1	99	86.111	ENSCHIG00000011437	TARBP1	83	86.111	Capra_hircus
ENSCLAG00000003655	TARBP1	99	77.472	ENSTSYG00000010382	TARBP1	99	77.472	Carlito_syrichta
ENSCLAG00000003655	TARBP1	94	80.911	ENSCAPG00000010831	TARBP1	100	80.911	Cavia_aperea
ENSCLAG00000003655	TARBP1	99	91.807	ENSCPOG00000013995	TARBP1	85	91.807	Cavia_porcellus
ENSCLAG00000003655	TARBP1	99	79.281	ENSCCAG00000037278	TARBP1	83	79.205	Cebus_capucinus
ENSCLAG00000003655	TARBP1	99	80.000	ENSCATG00000011754	TARBP1	83	80.000	Cercocebus_atys
ENSCLAG00000003655	TARBP1	95	78.644	ENSCSAG00000010100	TARBP1	99	78.566	Chlorocebus_sabaeus
ENSCLAG00000003655	TARBP1	89	66.172	ENSCPBG00000005587	TARBP1	80	66.172	Chrysemys_picta_bellii
ENSCLAG00000003655	TARBP1	96	78.976	ENSCANG00000034343	TARBP1	96	78.899	Colobus_angolensis_palliatus
ENSCLAG00000003655	TARBP1	99	79.693	ENSCGRG00001016690	Tarbp1	85	79.540	Cricetulus_griseus_chok1gshd
ENSCLAG00000003655	TARBP1	96	79.693	ENSCGRG00000016893	Tarbp1	89	79.540	Cricetulus_griseus_crigri
ENSCLAG00000003655	TARBP1	96	41.591	ENSCSEG00000005255	si:dkey-85a20.4	78	48.868	Cynoglossus_semilaevis
ENSCLAG00000003655	TARBP1	95	46.682	ENSDARG00000079055	si:dkey-85a20.4	99	54.844	Danio_rerio
ENSCLAG00000003655	TARBP1	99	78.175	ENSDNOG00000008637	TARBP1	82	78.099	Dasypus_novemcinctus
ENSCLAG00000003655	TARBP1	95	74.595	ENSDORG00000007984	Tarbp1	100	74.884	Dipodomys_ordii
ENSCLAG00000003655	TARBP1	99	85.000	ENSEASG00005000252	TARBP1	84	85.000	Equus_asinus_asinus
ENSCLAG00000003655	TARBP1	99	85.000	ENSECAG00000023673	TARBP1	83	85.000	Equus_caballus
ENSCLAG00000003655	TARBP1	95	44.511	ENSELUG00000012193	si:dkey-85a20.4	81	44.511	Esox_lucius
ENSCLAG00000003655	TARBP1	99	91.667	ENSFCAG00000014183	TARBP1	82	91.667	Felis_catus
ENSCLAG00000003655	TARBP1	97	64.791	ENSFALG00000013565	TARBP1	99	64.809	Ficedula_albicollis
ENSCLAG00000003655	TARBP1	95	86.151	ENSFDAG00000001308	TARBP1	100	86.151	Fukomys_damarensis
ENSCLAG00000003655	TARBP1	96	38.547	ENSFHEG00000007565	si:dkey-85a20.4	70	53.388	Fundulus_heteroclitus
ENSCLAG00000003655	TARBP1	96	42.868	ENSGMOG00000004549	si:dkey-85a20.4	94	42.825	Gadus_morhua
ENSCLAG00000003655	TARBP1	96	60.886	ENSGALG00000011000	TARBP1	81	60.886	Gallus_gallus
ENSCLAG00000003655	TARBP1	96	44.237	ENSGAFG00000007387	si:dkey-85a20.4	80	44.078	Gambusia_affinis
ENSCLAG00000003655	TARBP1	96	44.628	ENSGACG00000005865	si:dkey-85a20.4	93	44.628	Gasterosteus_aculeatus
ENSCLAG00000003655	TARBP1	96	67.557	ENSGAGG00000012102	TARBP1	84	67.405	Gopherus_agassizii
ENSCLAG00000003655	TARBP1	96	77.269	ENSGGOG00000022879	TARBP1	95	77.193	Gorilla_gorilla
ENSCLAG00000003655	TARBP1	96	45.259	ENSHBUG00000008877	si:dkey-85a20.4	80	45.185	Haplochromis_burtoni
ENSCLAG00000003655	TARBP1	99	91.501	ENSHGLG00000011592	TARBP1	85	91.501	Heterocephalus_glaber_female
ENSCLAG00000003655	TARBP1	99	90.658	ENSHGLG00100015169	TARBP1	93	90.352	Heterocephalus_glaber_male
ENSCLAG00000003655	TARBP1	95	43.359	ENSIPUG00000005249	si:dkey-85a20.4	78	43.369	Ictalurus_punctatus
ENSCLAG00000003655	TARBP1	100	72.760	ENSSTOG00000032291	TARBP1	99	72.760	Ictidomys_tridecemlineatus
ENSCLAG00000003655	TARBP1	99	75.676	ENSJJAG00000017840	Tarbp1	93	75.676	Jaculus_jaculus
ENSCLAG00000003655	TARBP1	73	46.250	ENSKMAG00000017546	si:dkey-85a20.4	65	46.533	Kryptolebias_marmoratus
ENSCLAG00000003655	TARBP1	74	50.667	ENSLBEG00000012132	si:dkey-85a20.4	71	50.866	Labrus_bergylta
ENSCLAG00000003655	TARBP1	96	54.290	ENSLACG00000004337	TARBP1	80	54.214	Latimeria_chalumnae
ENSCLAG00000003655	TARBP1	96	49.506	ENSLOCG00000016214	si:dkey-85a20.4	80	49.583	Lepisosteus_oculatus
ENSCLAG00000003655	TARBP1	96	78.331	ENSLAFG00000011394	TARBP1	83	78.331	Loxodonta_africana
ENSCLAG00000003655	TARBP1	99	80.000	ENSMFAG00000041068	TARBP1	84	80.000	Macaca_fascicularis
ENSCLAG00000003655	TARBP1	99	80.000	ENSMMUG00000021703	TARBP1	83	80.000	Macaca_mulatta
ENSCLAG00000003655	TARBP1	99	80.000	ENSMNEG00000045002	TARBP1	83	80.000	Macaca_nemestrina
ENSCLAG00000003655	TARBP1	96	78.746	ENSMLEG00000044182	TARBP1	97	78.670	Mandrillus_leucophaeus
ENSCLAG00000003655	TARBP1	96	45.407	ENSMAMG00000021760	si:dkey-85a20.4	81	45.173	Mastacembelus_armatus
ENSCLAG00000003655	TARBP1	96	45.333	ENSMZEG00005005751	si:dkey-85a20.4	80	45.259	Maylandia_zebra
ENSCLAG00000003655	TARBP1	99	79.176	ENSMAUG00000020968	Tarbp1	85	79.024	Mesocricetus_auratus
ENSCLAG00000003655	TARBP1	99	77.500	ENSMICG00000015280	TARBP1	82	77.500	Microcebus_murinus
ENSCLAG00000003655	TARBP1	99	77.710	ENSMOCG00000004128	Tarbp1	85	77.710	Microtus_ochrogaster
ENSCLAG00000003655	TARBP1	95	43.807	ENSMMOG00000007795	si:dkey-85a20.4	80	43.712	Mola_mola
ENSCLAG00000003655	TARBP1	96	71.199	ENSMODG00000008504	TARBP1	79	71.199	Monodelphis_domestica
ENSCLAG00000003655	TARBP1	95	44.665	ENSMALG00000002916	si:dkey-85a20.4	80	44.859	Monopterus_albus
ENSCLAG00000003655	TARBP1	99	77.370	MGP_CAROLIEiJ_G0031729	Tarbp1	81	81.887	Mus_caroli
ENSCLAG00000003655	TARBP1	96	77.064	ENSMUSG00000090290	Tarbp1	85	76.835	Mus_musculus
ENSCLAG00000003655	TARBP1	99	77.405	MGP_PahariEiJ_G0023326	Tarbp1	85	77.252	Mus_pahari
ENSCLAG00000003655	TARBP1	99	77.200	MGP_SPRETEiJ_G0032846	Tarbp1	85	76.970	Mus_spretus
ENSCLAG00000003655	TARBP1	91	78.405	ENSMPUG00000002802	TARBP1	99	77.903	Mustela_putorius_furo
ENSCLAG00000003655	TARBP1	97	72.458	ENSMLUG00000002414	TARBP1	96	72.686	Myotis_lucifugus
ENSCLAG00000003655	TARBP1	99	80.000	ENSNLEG00000002518	TARBP1	83	80.000	Nomascus_leucogenys
ENSCLAG00000003655	TARBP1	77	81.336	ENSOPRG00000013822	TARBP1	64	81.336	Ochotona_princeps
ENSCLAG00000003655	TARBP1	99	90.575	ENSODEG00000005238	TARBP1	88	90.575	Octodon_degus
ENSCLAG00000003655	TARBP1	96	44.601	ENSONIG00000009789	si:dkey-85a20.4	93	44.601	Oreochromis_niloticus
ENSCLAG00000003655	TARBP1	99	82.500	ENSOCUG00000017418	TARBP1	83	82.500	Oryctolagus_cuniculus
ENSCLAG00000003655	TARBP1	96	43.189	ENSORLG00000010529	si:dkey-85a20.4	80	43.071	Oryzias_latipes
ENSCLAG00000003655	TARBP1	96	43.231	ENSORLG00020019264	si:dkey-85a20.4	80	43.114	Oryzias_latipes_hni
ENSCLAG00000003655	TARBP1	96	43.082	ENSORLG00015003276	si:dkey-85a20.4	80	43.082	Oryzias_latipes_hsok
ENSCLAG00000003655	TARBP1	99	82.500	ENSOGAG00000002379	TARBP1	83	82.500	Otolemur_garnettii
ENSCLAG00000003655	TARBP1	99	86.111	ENSOARG00000003434	TARBP1	89	86.111	Ovis_aries
ENSCLAG00000003655	TARBP1	96	79.587	ENSPPAG00000028097	TARBP1	96	79.511	Pan_paniscus
ENSCLAG00000003655	TARBP1	99	91.667	ENSPPRG00000013561	TARBP1	87	91.667	Panthera_pardus
ENSCLAG00000003655	TARBP1	96	78.506	ENSPTIG00000009281	TARBP1	97	78.670	Panthera_tigris_altaica
ENSCLAG00000003655	TARBP1	99	80.000	ENSPTRG00000002124	TARBP1	83	80.000	Pan_troglodytes
ENSCLAG00000003655	TARBP1	99	80.000	ENSPANG00000021933	TARBP1	83	80.000	Papio_anubis
ENSCLAG00000003655	TARBP1	96	47.143	ENSPKIG00000016716	si:dkey-85a20.4	79	46.997	Paramormyrops_kingsleyae
ENSCLAG00000003655	TARBP1	94	66.459	ENSPSIG00000010699	TARBP1	99	66.277	Pelodiscus_sinensis
ENSCLAG00000003655	TARBP1	99	78.517	ENSPEMG00000006888	Tarbp1	89	78.440	Peromyscus_maniculatus_bairdii
ENSCLAG00000003655	TARBP1	86	80.882	ENSPCIG00000029710	TARBP1	79	80.882	Phascolarctos_cinereus
ENSCLAG00000003655	TARBP1	96	43.811	ENSPFOG00000013020	si:dkey-85a20.4	93	43.811	Poecilia_formosa
ENSCLAG00000003655	TARBP1	96	44.195	ENSPLAG00000006044	si:dkey-85a20.4	80	44.036	Poecilia_latipinna
ENSCLAG00000003655	TARBP1	96	44.120	ENSPMEG00000017857	si:dkey-85a20.4	80	43.961	Poecilia_mexicana
ENSCLAG00000003655	TARBP1	96	44.602	ENSPREG00000022753	si:dkey-85a20.4	80	44.519	Poecilia_reticulata
ENSCLAG00000003655	TARBP1	89	98.214	ENSPPYG00000000102	TARBP1	81	98.214	Pongo_abelii
ENSCLAG00000003655	TARBP1	79	87.919	ENSPCAG00000004808	TARBP1	66	87.919	Procavia_capensis
ENSCLAG00000003655	TARBP1	99	86.111	ENSPCOG00000005666	TARBP1	83	86.111	Propithecus_coquereli
ENSCLAG00000003655	TARBP1	99	82.500	ENSPVAG00000014798	TARBP1	84	82.500	Pteropus_vampyrus
ENSCLAG00000003655	TARBP1	96	44.277	ENSPNYG00000019135	si:dkey-85a20.4	80	44.277	Pundamilia_nyererei
ENSCLAG00000003655	TARBP1	96	72.477	ENSRNOG00000053574	Tarbp1	83	72.324	Rattus_norvegicus
ENSCLAG00000003655	TARBP1	99	84.375	ENSRBIG00000043362	TARBP1	91	84.375	Rhinopithecus_bieti
ENSCLAG00000003655	TARBP1	99	80.000	ENSRROG00000029527	TARBP1	87	80.000	Rhinopithecus_roxellana
ENSCLAG00000003655	TARBP1	99	75.877	ENSSBOG00000034503	TARBP1	99	75.877	Saimiri_boliviensis_boliviensis
ENSCLAG00000003655	TARBP1	96	71.309	ENSSHAG00000000013	TARBP1	97	71.233	Sarcophilus_harrisii
ENSCLAG00000003655	TARBP1	96	45.509	ENSSFOG00015002660	si:dkey-85a20.4	96	45.556	Scleropages_formosus
ENSCLAG00000003655	TARBP1	96	46.245	ENSSMAG00000007081	si:dkey-85a20.4	79	46.039	Scophthalmus_maximus
ENSCLAG00000003655	TARBP1	96	44.018	ENSSDUG00000023566	si:dkey-85a20.4	80	44.018	Seriola_dumerili
ENSCLAG00000003655	TARBP1	96	45.386	ENSSLDG00000020200	si:dkey-85a20.4	81	45.311	Seriola_lalandi_dorsalis
ENSCLAG00000003655	TARBP1	93	76.905	ENSSARG00000012207	TARBP1	79	76.905	Sorex_araneus
ENSCLAG00000003655	TARBP1	96	64.067	ENSSPUG00000015364	TARBP1	81	63.914	Sphenodon_punctatus
ENSCLAG00000003655	TARBP1	96	44.611	ENSSPAG00000007213	si:dkey-85a20.4	80	44.611	Stegastes_partitus
ENSCLAG00000003655	TARBP1	94	95.968	ENSSSCG00000010160	TARBP1	82	95.690	Sus_scrofa
ENSCLAG00000003655	TARBP1	96	64.652	ENSTGUG00000010214	TARBP1	100	64.652	Taeniopygia_guttata
ENSCLAG00000003655	TARBP1	96	44.075	ENSTNIG00000016586	si:dkey-85a20.4	96	44.461	Tetraodon_nigroviridis
ENSCLAG00000003655	TARBP1	94	75.264	ENSTTRG00000008707	TARBP1	82	75.102	Tursiops_truncatus
ENSCLAG00000003655	TARBP1	96	79.297	ENSUMAG00000006730	TARBP1	98	79.100	Ursus_maritimus
ENSCLAG00000003655	TARBP1	74	100.000	ENSVPAG00000007665	TARBP1	71	100.000	Vicugna_pacos
ENSCLAG00000003655	TARBP1	96	79.495	ENSVVUG00000007460	TARBP1	97	77.778	Vulpes_vulpes
ENSCLAG00000003655	TARBP1	96	53.364	ENSXETG00000016224	tarbp1	96	53.364	Xenopus_tropicalis
ENSCLAG00000003655	TARBP1	87	48.022	ENSXCOG00000011779	si:dkey-85a20.4	86	48.158	Xiphophorus_couchianus
ENSCLAG00000003655	TARBP1	77	41.983	ENSXMAG00000009600	si:dkey-85a20.4	100	41.876	Xiphophorus_maculatus