EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCLAG00000003983 (Gene tree)
Gene ID: 102024615
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Minus strand
Length: 31542 bases
Position: chrJH722005.1:2386877-2418418
Accession: 102024615
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000005608	EST1	PF10374.9	8.3e-24	1	1
ENSCLAP00000005608	EST1_DNA_bind	PF10373.9	5.7e-40	1	2
ENSCLAP00000005608	EST1_DNA_bind	PF10373.9	5.7e-40	2	2
ENSCLAP00000005608	PIN_4	PF13638.6	2.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000005709	SMG5-201	4343	XM_005411667	ENSCLAP00000005608	1018 (aa)	XP_005411724	UPI00038EB5CC

Gene Model

Click here to download ENSCLAG00000003983's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000003983's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000003983	SMG5	100	96.464	ENSG00000198952	SMG5	100	96.464	Homo_sapiens
ENSCLAG00000003983	SMG5	99	67.289	ENSAPOG00000019690	smg5	99	66.146	Acanthochromis_polyacanthus
ENSCLAG00000003983	SMG5	98	91.960	ENSAMEG00000014458	SMG5	100	92.060	Ailuropoda_melanoleuca
ENSCLAG00000003983	SMG5	99	65.010	ENSACIG00000001353	smg5	99	65.772	Amphilophus_citrinellus
ENSCLAG00000003983	SMG5	98	65.217	ENSAOCG00000019483	smg5	96	65.613	Amphiprion_ocellaris
ENSCLAG00000003983	SMG5	98	66.269	ENSAPEG00000022949	smg5	98	66.239	Amphiprion_percula
ENSCLAG00000003983	SMG5	99	65.580	ENSATEG00000005348	smg5	99	66.537	Anabas_testudineus
ENSCLAG00000003983	SMG5	98	78.773	ENSAPLG00000010263	SMG5	100	78.384	Anas_platyrhynchos
ENSCLAG00000003983	SMG5	100	95.678	ENSANAG00000032899	SMG5	100	95.776	Aotus_nancymaae
ENSCLAG00000003983	SMG5	99	64.559	ENSACLG00000009311	smg5	99	65.226	Astatotilapia_calliptera
ENSCLAG00000003983	SMG5	99	43.503	ENSBTAG00000021747	-	99	43.340	Bos_taurus
ENSCLAG00000003983	SMG5	100	94.990	ENSBTAG00000009435	SMG5	100	95.088	Bos_taurus
ENSCLAG00000003983	SMG5	100	95.678	ENSCJAG00000005684	SMG5	100	95.776	Callithrix_jacchus
ENSCLAG00000003983	SMG5	100	93.615	ENSCAFG00000016839	SMG5	100	93.124	Canis_familiaris
ENSCLAG00000003983	SMG5	100	93.615	ENSCAFG00020006061	SMG5	100	93.124	Canis_lupus_dingo
ENSCLAG00000003983	SMG5	99	44.012	ENSCHIG00000006323	-	99	44.086	Capra_hircus
ENSCLAG00000003983	SMG5	100	94.892	ENSCHIG00000007709	SMG5	100	94.990	Capra_hircus
ENSCLAG00000003983	SMG5	100	95.584	ENSTSYG00000004099	SMG5	100	94.406	Carlito_syrichta
ENSCLAG00000003983	SMG5	97	76.065	ENSCAPG00000003631	SMG5	100	77.155	Cavia_aperea
ENSCLAG00000003983	SMG5	100	97.642	ENSCPOG00000015696	SMG5	100	97.642	Cavia_porcellus
ENSCLAG00000003983	SMG5	100	96.169	ENSCCAG00000027409	SMG5	100	96.169	Cebus_capucinus
ENSCLAG00000003983	SMG5	100	96.562	ENSCATG00000030539	SMG5	100	96.562	Cercocebus_atys
ENSCLAG00000003983	SMG5	100	96.464	ENSCSAG00000002120	SMG5	100	96.464	Chlorocebus_sabaeus
ENSCLAG00000003983	SMG5	54	92.336	ENSCHOG00000008741	-	57	92.336	Choloepus_hoffmanni
ENSCLAG00000003983	SMG5	94	77.890	ENSCPBG00000025848	SMG5	100	78.239	Chrysemys_picta_bellii
ENSCLAG00000003983	SMG5	93	35.487	ENSCING00000008706	-	99	34.324	Ciona_intestinalis
ENSCLAG00000003983	SMG5	100	92.338	ENSCANG00000029208	SMG5	100	91.945	Colobus_angolensis_palliatus
ENSCLAG00000003983	SMG5	100	92.633	ENSCGRG00001006336	Smg5	100	92.633	Cricetulus_griseus_chok1gshd
ENSCLAG00000003983	SMG5	98	92.656	ENSCGRG00000005111	Smg5	100	92.649	Cricetulus_griseus_crigri
ENSCLAG00000003983	SMG5	99	65.430	ENSCSEG00000014220	smg5	92	77.778	Cynoglossus_semilaevis
ENSCLAG00000003983	SMG5	99	60.721	ENSCVAG00000000529	smg5	99	61.224	Cyprinodon_variegatus
ENSCLAG00000003983	SMG5	100	91.061	ENSDNOG00000000051	SMG5	100	91.159	Dasypus_novemcinctus
ENSCLAG00000003983	SMG5	92	36.325	ENSDNOG00000039862	-	100	34.916	Dasypus_novemcinctus
ENSCLAG00000003983	SMG5	100	94.897	ENSDORG00000010382	Smg5	100	94.112	Dipodomys_ordii
ENSCLAG00000003983	SMG5	66	35.484	FBgn0019890	Smg5	62	35.484	Drosophila_melanogaster
ENSCLAG00000003983	SMG5	82	97.087	ENSETEG00000010336	SMG5	83	97.087	Echinops_telfairi
ENSCLAG00000003983	SMG5	90	47.564	ENSEBUG00000003739	smg5	98	47.609	Eptatretus_burgeri
ENSCLAG00000003983	SMG5	100	95.580	ENSEASG00005019122	SMG5	100	95.678	Equus_asinus_asinus
ENSCLAG00000003983	SMG5	100	95.580	ENSECAG00000001389	SMG5	100	95.678	Equus_caballus
ENSCLAG00000003983	SMG5	72	97.695	ENSEEUG00000012690	SMG5	73	97.695	Erinaceus_europaeus
ENSCLAG00000003983	SMG5	99	65.351	ENSELUG00000012585	smg5	99	64.870	Esox_lucius
ENSCLAG00000003983	SMG5	100	93.517	ENSFCAG00000011783	SMG5	100	93.131	Felis_catus
ENSCLAG00000003983	SMG5	58	81.198	ENSFALG00000001166	-	99	80.134	Ficedula_albicollis
ENSCLAG00000003983	SMG5	98	94.763	ENSFDAG00000017388	SMG5	100	94.763	Fukomys_damarensis
ENSCLAG00000003983	SMG5	97	62.198	ENSFHEG00000013939	smg5	95	67.732	Fundulus_heteroclitus
ENSCLAG00000003983	SMG5	99	61.566	ENSGMOG00000007310	smg5	92	75.799	Gadus_morhua
ENSCLAG00000003983	SMG5	99	77.575	ENSGALG00000029918	-	100	76.644	Gallus_gallus
ENSCLAG00000003983	SMG5	100	79.621	ENSGAGG00000016131	SMG5	100	78.992	Gopherus_agassizii
ENSCLAG00000003983	SMG5	100	96.267	ENSGGOG00000010932	SMG5	100	96.267	Gorilla_gorilla
ENSCLAG00000003983	SMG5	99	64.470	ENSHBUG00000008654	smg5	99	64.482	Haplochromis_burtoni
ENSCLAG00000003983	SMG5	100	94.695	ENSHGLG00000019152	SMG5	100	94.695	Heterocephalus_glaber_female
ENSCLAG00000003983	SMG5	90	94.962	ENSHGLG00100015948	SMG5	99	94.962	Heterocephalus_glaber_male
ENSCLAG00000003983	SMG5	99	58.511	ENSHCOG00000010229	smg5	83	77.778	Hippocampus_comes
ENSCLAG00000003983	SMG5	99	62.329	ENSIPUG00000006624	Smg5	99	61.953	Ictalurus_punctatus
ENSCLAG00000003983	SMG5	100	96.860	ENSSTOG00000001780	SMG5	100	96.860	Ictidomys_tridecemlineatus
ENSCLAG00000003983	SMG5	100	92.941	ENSJJAG00000022763	Smg5	100	92.745	Jaculus_jaculus
ENSCLAG00000003983	SMG5	50	59.341	ENSKMAG00000014586	smg5	99	60.978	Kryptolebias_marmoratus
ENSCLAG00000003983	SMG5	99	66.699	ENSLBEG00000002145	smg5	99	66.087	Labrus_bergylta
ENSCLAG00000003983	SMG5	100	64.739	ENSLACG00000010521	SMG5	100	65.024	Latimeria_chalumnae
ENSCLAG00000003983	SMG5	100	93.615	ENSLAFG00000006241	SMG5	100	93.713	Loxodonta_africana
ENSCLAG00000003983	SMG5	100	96.464	ENSMFAG00000045357	SMG5	100	96.464	Macaca_fascicularis
ENSCLAG00000003983	SMG5	100	96.562	ENSMMUG00000000090	SMG5	100	96.562	Macaca_mulatta
ENSCLAG00000003983	SMG5	100	96.365	ENSMNEG00000044425	SMG5	100	96.365	Macaca_nemestrina
ENSCLAG00000003983	SMG5	100	89.922	ENSMLEG00000041192	SMG5	100	89.530	Mandrillus_leucophaeus
ENSCLAG00000003983	SMG5	99	61.998	ENSMAMG00000010683	smg5	100	60.302	Mastacembelus_armatus
ENSCLAG00000003983	SMG5	99	63.188	ENSMZEG00005015815	smg5	99	63.801	Maylandia_zebra
ENSCLAG00000003983	SMG5	63	58.832	ENSMZEG00005016543	smg5	100	58.912	Maylandia_zebra
ENSCLAG00000003983	SMG5	55	44.834	ENSMAUG00000000043	-	96	43.878	Mesocricetus_auratus
ENSCLAG00000003983	SMG5	100	91.552	ENSMAUG00000010381	Smg5	100	91.749	Mesocricetus_auratus
ENSCLAG00000003983	SMG5	100	95.972	ENSMICG00000002257	SMG5	100	95.972	Microcebus_murinus
ENSCLAG00000003983	SMG5	100	91.471	ENSMOCG00000016590	Smg5	100	90.882	Microtus_ochrogaster
ENSCLAG00000003983	SMG5	99	59.038	ENSMMOG00000017199	smg5	99	60.000	Mola_mola
ENSCLAG00000003983	SMG5	78	37.531	ENSMODG00000010675	-	84	37.666	Monodelphis_domestica
ENSCLAG00000003983	SMG5	75	39.895	ENSMODG00000004735	-	86	40.000	Monodelphis_domestica
ENSCLAG00000003983	SMG5	97	34.623	ENSMODG00000004511	-	99	33.797	Monodelphis_domestica
ENSCLAG00000003983	SMG5	87	89.876	ENSMODG00000016901	SMG5	98	88.976	Monodelphis_domestica
ENSCLAG00000003983	SMG5	82	37.317	ENSMODG00000004532	-	83	37.940	Monodelphis_domestica
ENSCLAG00000003983	SMG5	99	60.622	ENSMALG00000010375	smg5	55	54.781	Monopterus_albus
ENSCLAG00000003983	SMG5	100	92.338	MGP_CAROLIEiJ_G0025163	Smg5	100	98.324	Mus_caroli
ENSCLAG00000003983	SMG5	100	92.633	ENSMUSG00000001415	Smg5	99	98.324	Mus_musculus
ENSCLAG00000003983	SMG5	100	92.345	MGP_PahariEiJ_G0026606	Smg5	100	98.324	Mus_pahari
ENSCLAG00000003983	SMG5	100	92.436	MGP_SPRETEiJ_G0026104	Smg5	100	98.324	Mus_spretus
ENSCLAG00000003983	SMG5	94	92.752	ENSMPUG00000004546	SMG5	100	92.227	Mustela_putorius_furo
ENSCLAG00000003983	SMG5	100	93.933	ENSMLUG00000008518	SMG5	100	93.249	Myotis_lucifugus
ENSCLAG00000003983	SMG5	98	43.988	ENSNGAG00000012101	-	98	44.389	Nannospalax_galili
ENSCLAG00000003983	SMG5	100	94.008	ENSNGAG00000020706	Smg5	100	93.910	Nannospalax_galili
ENSCLAG00000003983	SMG5	97	62.712	ENSNBRG00000004332	smg5	98	63.964	Neolamprologus_brichardi
ENSCLAG00000003983	SMG5	100	95.678	ENSNLEG00000012439	SMG5	100	95.776	Nomascus_leucogenys
ENSCLAG00000003983	SMG5	100	88.114	ENSMEUG00000012834	SMG5	100	86.051	Notamacropus_eugenii
ENSCLAG00000003983	SMG5	100	93.124	ENSOPRG00000009152	SMG5	100	93.222	Ochotona_princeps
ENSCLAG00000003983	SMG5	100	97.151	ENSODEG00000012237	SMG5	100	97.151	Octodon_degus
ENSCLAG00000003983	SMG5	89	40.416	ENSOCUG00000023338	-	99	39.759	Oryctolagus_cuniculus
ENSCLAG00000003983	SMG5	98	95.272	ENSOCUG00000012886	SMG5	100	95.372	Oryctolagus_cuniculus
ENSCLAG00000003983	SMG5	99	65.039	ENSORLG00020013127	smg5	99	65.628	Oryzias_latipes_hni
ENSCLAG00000003983	SMG5	99	64.752	ENSORLG00015019014	smg5	99	65.437	Oryzias_latipes_hsok
ENSCLAG00000003983	SMG5	100	94.401	ENSOGAG00000004966	SMG5	100	94.499	Otolemur_garnettii
ENSCLAG00000003983	SMG5	99	43.829	ENSOARG00000011963	-	99	44.000	Ovis_aries
ENSCLAG00000003983	SMG5	100	94.990	ENSOARG00000005778	SMG5	100	95.088	Ovis_aries
ENSCLAG00000003983	SMG5	100	96.365	ENSPPAG00000011996	SMG5	100	96.365	Pan_paniscus
ENSCLAG00000003983	SMG5	98	93.360	ENSPPRG00000011901	SMG5	100	92.857	Panthera_pardus
ENSCLAG00000003983	SMG5	99	85.204	ENSPTIG00000007892	SMG5	99	84.493	Panthera_tigris_altaica
ENSCLAG00000003983	SMG5	100	96.365	ENSPTRG00000023925	SMG5	100	96.365	Pan_troglodytes
ENSCLAG00000003983	SMG5	100	96.365	ENSPTRG00000049282	-	100	96.365	Pan_troglodytes
ENSCLAG00000003983	SMG5	100	96.562	ENSPANG00000011201	SMG5	100	96.562	Papio_anubis
ENSCLAG00000003983	SMG5	99	65.953	ENSPKIG00000009402	smg5	99	66.732	Paramormyrops_kingsleyae
ENSCLAG00000003983	SMG5	98	80.020	ENSPSIG00000015198	SMG5	100	79.663	Pelodiscus_sinensis
ENSCLAG00000003983	SMG5	99	60.476	ENSPMGG00000010465	smg5	99	60.882	Periophthalmus_magnuspinnatus
ENSCLAG00000003983	SMG5	100	92.633	ENSPEMG00000001819	Smg5	100	92.633	Peromyscus_maniculatus_bairdii
ENSCLAG00000003983	SMG5	56	45.550	ENSPEMG00000010022	-	95	45.201	Peromyscus_maniculatus_bairdii
ENSCLAG00000003983	SMG5	99	48.864	ENSPMAG00000000410	smg5	100	49.290	Petromyzon_marinus
ENSCLAG00000003983	SMG5	100	89.401	ENSPCIG00000018938	SMG5	100	88.616	Phascolarctos_cinereus
ENSCLAG00000003983	SMG5	50	61.338	ENSPFOG00000010191	smg5	99	62.007	Poecilia_formosa
ENSCLAG00000003983	SMG5	50	60.297	ENSPLAG00000009332	smg5	99	61.918	Poecilia_latipinna
ENSCLAG00000003983	SMG5	99	66.186	ENSPMEG00000014105	smg5	99	65.772	Poecilia_mexicana
ENSCLAG00000003983	SMG5	93	69.885	ENSPREG00000017713	smg5	99	62.097	Poecilia_reticulata
ENSCLAG00000003983	SMG5	100	96.660	ENSPPYG00000000723	SMG5	100	96.660	Pongo_abelii
ENSCLAG00000003983	SMG5	75	97.790	ENSPCAG00000008412	SMG5	81	97.790	Procavia_capensis
ENSCLAG00000003983	SMG5	100	95.678	ENSPCOG00000004741	SMG5	100	95.776	Propithecus_coquereli
ENSCLAG00000003983	SMG5	100	85.363	ENSPVAG00000016748	SMG5	100	86.542	Pteropus_vampyrus
ENSCLAG00000003983	SMG5	93	63.657	ENSPNYG00000013397	smg5	99	60.796	Pundamilia_nyererei
ENSCLAG00000003983	SMG5	100	92.731	ENSRNOG00000019590	Smg5	100	92.731	Rattus_norvegicus
ENSCLAG00000003983	SMG5	100	96.464	ENSRBIG00000027428	SMG5	100	96.464	Rhinopithecus_bieti
ENSCLAG00000003983	SMG5	100	96.365	ENSRROG00000030035	SMG5	100	96.365	Rhinopithecus_roxellana
ENSCLAG00000003983	SMG5	100	95.678	ENSSBOG00000033339	SMG5	100	95.776	Saimiri_boliviensis_boliviensis
ENSCLAG00000003983	SMG5	64	39.766	ENSSHAG00000000935	-	82	40.854	Sarcophilus_harrisii
ENSCLAG00000003983	SMG5	88	40.682	ENSSHAG00000000561	-	86	40.682	Sarcophilus_harrisii
ENSCLAG00000003983	SMG5	98	88.700	ENSSHAG00000014163	SMG5	100	87.900	Sarcophilus_harrisii
ENSCLAG00000003983	SMG5	99	33.558	ENSSHAG00000009572	-	80	42.506	Sarcophilus_harrisii
ENSCLAG00000003983	SMG5	99	66.087	ENSSFOG00015024175	smg5	99	65.863	Scleropages_formosus
ENSCLAG00000003983	SMG5	99	60.515	ENSSMAG00000013059	smg5	99	61.888	Scophthalmus_maximus
ENSCLAG00000003983	SMG5	50	60.256	ENSSDUG00000007122	smg5	55	56.704	Seriola_dumerili
ENSCLAG00000003983	SMG5	99	60.568	ENSSLDG00000011418	smg5	97	61.364	Seriola_lalandi_dorsalis
ENSCLAG00000003983	SMG5	90	81.175	ENSSARG00000012484	SMG5	100	80.740	Sorex_araneus
ENSCLAG00000003983	SMG5	94	77.755	ENSSPUG00000002260	SMG5	100	76.138	Sphenodon_punctatus
ENSCLAG00000003983	SMG5	91	76.815	ENSSPAG00000014266	smg5	99	64.306	Stegastes_partitus
ENSCLAG00000003983	SMG5	99	74.828	ENSSSCG00000039308	-	100	74.730	Sus_scrofa
ENSCLAG00000003983	SMG5	100	96.365	ENSSSCG00000006490	-	100	96.365	Sus_scrofa
ENSCLAG00000003983	SMG5	99	80.257	ENSTGUG00000003748	-	100	79.922	Taeniopygia_guttata
ENSCLAG00000003983	SMG5	99	64.034	ENSTRUG00000012580	smg5	99	64.547	Takifugu_rubripes
ENSCLAG00000003983	SMG5	99	65.276	ENSTNIG00000010303	smg5	99	64.951	Tetraodon_nigroviridis
ENSCLAG00000003983	SMG5	60	100.000	ENSTBEG00000002777	SMG5	60	100.000	Tupaia_belangeri
ENSCLAG00000003983	SMG5	100	90.373	ENSTTRG00000001401	SMG5	100	89.980	Tursiops_truncatus
ENSCLAG00000003983	SMG5	100	92.829	ENSUAMG00000013721	SMG5	100	92.338	Ursus_americanus
ENSCLAG00000003983	SMG5	98	88.566	ENSUMAG00000018041	SMG5	97	88.064	Ursus_maritimus
ENSCLAG00000003983	SMG5	98	85.398	ENSVPAG00000009446	SMG5	99	84.995	Vicugna_pacos
ENSCLAG00000003983	SMG5	100	93.615	ENSVVUG00000005887	SMG5	100	93.124	Vulpes_vulpes
ENSCLAG00000003983	SMG5	77	64.625	ENSXETG00000033791	SMG5	99	64.573	Xenopus_tropicalis
ENSCLAG00000003983	SMG5	99	66.085	ENSXMAG00000013499	smg5	99	65.703	Xiphophorus_maculatus