EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCLAG00000004037 (Gene tree)
Gene ID: 102007269
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Minus strand
Length: 114841 bases
Position: chrJH721984.1:2798336-2913176
Accession: 102007269
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000005691	UPF1_Zn_bind	PF09416.10	5.3e-75	1	1
ENSCLAP00000005693	UPF1_Zn_bind	PF09416.10	5.9e-75	1	1
ENSCLAP00000005692	UPF1_Zn_bind	PF09416.10	6.1e-75	1	1
ENSCLAP00000005691	ResIII	PF04851.15	2e-05	1	1
ENSCLAP00000005693	ResIII	PF04851.15	2.2e-05	1	1
ENSCLAP00000005692	ResIII	PF04851.15	2.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000005793	UPF1-202	3381	-	ENSCLAP00000005692	1126 (aa)	-	-
ENSCLAT00000005792	UPF1-201	4629	XM_013507221	ENSCLAP00000005691	1052 (aa)	XP_013362675	-
ENSCLAT00000005794	UPF1-203	3330	-	ENSCLAP00000005693	1109 (aa)	-	-

Gene Model

Click here to download ENSCLAG00000004037's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000004037's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000004037	UPF1	100	99.620	ENSG00000005007	UPF1	96	98.336	Homo_sapiens
ENSCLAG00000004037	UPF1	99	92.424	ENSAPOG00000023773	upf1	95	92.614	Acanthochromis_polyacanthus
ENSCLAG00000004037	UPF1	99	93.827	ENSAPOG00000010916	-	95	93.922	Acanthochromis_polyacanthus
ENSCLAG00000004037	UPF1	99	99.619	ENSAMEG00000011474	UPF1	96	98.150	Ailuropoda_melanoleuca
ENSCLAG00000004037	UPF1	99	92.053	ENSACIG00000019949	upf1	95	92.614	Amphilophus_citrinellus
ENSCLAG00000004037	UPF1	98	93.822	ENSACIG00000010985	-	100	93.919	Amphilophus_citrinellus
ENSCLAG00000004037	UPF1	99	93.827	ENSAOCG00000006352	-	100	91.426	Amphiprion_ocellaris
ENSCLAG00000004037	UPF1	99	91.912	ENSAOCG00000018519	upf1	95	92.502	Amphiprion_ocellaris
ENSCLAG00000004037	UPF1	99	91.912	ENSAPEG00000016344	upf1	95	92.502	Amphiprion_percula
ENSCLAG00000004037	UPF1	99	93.827	ENSAPEG00000006292	-	100	91.426	Amphiprion_percula
ENSCLAG00000004037	UPF1	99	93.827	ENSATEG00000016606	-	95	93.922	Anabas_testudineus
ENSCLAG00000004037	UPF1	99	89.935	ENSATEG00000017867	upf1	95	91.862	Anabas_testudineus
ENSCLAG00000004037	UPF1	99	98.192	ENSAPLG00000009175	UPF1	99	98.192	Anas_platyrhynchos
ENSCLAG00000004037	UPF1	100	98.289	ENSANAG00000024107	UPF1	97	96.750	Aotus_nancymaae
ENSCLAG00000004037	UPF1	99	91.864	ENSACLG00000007181	upf1	95	92.424	Astatotilapia_calliptera
ENSCLAG00000004037	UPF1	99	93.726	ENSACLG00000022630	-	95	93.726	Astatotilapia_calliptera
ENSCLAG00000004037	UPF1	99	94.207	ENSAMXG00000042187	upf1	95	94.777	Astyanax_mexicanus
ENSCLAG00000004037	UPF1	99	99.619	ENSBTAG00000020922	UPF1	96	98.057	Bos_taurus
ENSCLAG00000004037	UPF1	85	53.611	WBGene00004880	smg-2	94	50.145	Caenorhabditis_elegans
ENSCLAG00000004037	UPF1	100	99.620	ENSCJAG00000019627	UPF1	96	98.336	Callithrix_jacchus
ENSCLAG00000004037	UPF1	99	99.619	ENSCAFG00000014578	UPF1	96	98.061	Canis_familiaris
ENSCLAG00000004037	UPF1	99	98.573	ENSCAFG00020012347	UPF1	96	97.045	Canis_lupus_dingo
ENSCLAG00000004037	UPF1	99	99.619	ENSCHIG00000011018	UPF1	96	97.963	Capra_hircus
ENSCLAG00000004037	UPF1	100	99.430	ENSTSYG00000008877	UPF1	99	98.592	Carlito_syrichta
ENSCLAG00000004037	UPF1	100	98.954	ENSCAPG00000005758	UPF1	95	98.954	Cavia_aperea
ENSCLAG00000004037	UPF1	99	98.950	ENSCPOG00000025463	UPF1	95	98.393	Cavia_porcellus
ENSCLAG00000004037	UPF1	100	99.620	ENSCCAG00000032175	UPF1	96	98.330	Cebus_capucinus
ENSCLAG00000004037	UPF1	99	99.618	ENSCATG00000040306	UPF1	98	99.618	Cercocebus_atys
ENSCLAG00000004037	UPF1	100	98.574	ENSCSAG00000005276	UPF1	96	97.320	Chlorocebus_sabaeus
ENSCLAG00000004037	UPF1	99	97.249	ENSCPBG00000012513	UPF1	96	95.845	Chrysemys_picta_bellii
ENSCLAG00000004037	UPF1	74	82.497	ENSCING00000021399	-	91	82.497	Ciona_intestinalis
ENSCLAG00000004037	UPF1	99	73.415	ENSCSAVG00000006533	-	94	73.415	Ciona_savignyi
ENSCLAG00000004037	UPF1	100	99.620	ENSCANG00000029819	UPF1	99	98.597	Colobus_angolensis_palliatus
ENSCLAG00000004037	UPF1	100	98.194	ENSCGRG00001021067	Upf1	96	97.037	Cricetulus_griseus_chok1gshd
ENSCLAG00000004037	UPF1	100	99.240	ENSCGRG00000013480	Upf1	99	98.310	Cricetulus_griseus_crigri
ENSCLAG00000004037	UPF1	99	93.821	ENSCSEG00000016159	-	95	93.821	Cynoglossus_semilaevis
ENSCLAG00000004037	UPF1	99	87.369	ENSCSEG00000017239	upf1	95	87.559	Cynoglossus_semilaevis
ENSCLAG00000004037	UPF1	99	93.637	ENSCVAG00000010561	upf1	95	93.637	Cyprinodon_variegatus
ENSCLAG00000004037	UPF1	99	94.017	ENSDARG00000016302	upf1	95	94.587	Danio_rerio
ENSCLAG00000004037	UPF1	100	96.771	ENSDORG00000009984	Upf1	97	95.353	Dipodomys_ordii
ENSCLAG00000004037	UPF1	84	73.631	FBgn0030354	Upf1	80	69.959	Drosophila_melanogaster
ENSCLAG00000004037	UPF1	52	88.727	ENSEBUG00000010069	upf1	89	88.727	Eptatretus_burgeri
ENSCLAG00000004037	UPF1	99	98.668	ENSEASG00005006549	UPF1	96	97.225	Equus_asinus_asinus
ENSCLAG00000004037	UPF1	99	98.668	ENSECAG00000010639	UPF1	96	97.225	Equus_caballus
ENSCLAG00000004037	UPF1	99	91.588	ENSELUG00000020917	upf1	95	91.871	Esox_lucius
ENSCLAG00000004037	UPF1	99	92.351	ENSELUG00000012916	-	95	93.019	Esox_lucius
ENSCLAG00000004037	UPF1	99	99.524	ENSFCAG00000009757	UPF1	96	97.969	Felis_catus
ENSCLAG00000004037	UPF1	99	97.346	ENSFALG00000009312	UPF1	98	96.111	Ficedula_albicollis
ENSCLAG00000004037	UPF1	100	99.905	ENSFDAG00000014816	UPF1	100	99.905	Fukomys_damarensis
ENSCLAG00000004037	UPF1	99	89.548	ENSFHEG00000006428	upf1	95	89.306	Fundulus_heteroclitus
ENSCLAG00000004037	UPF1	91	93.648	ENSFHEG00000016276	-	96	93.829	Fundulus_heteroclitus
ENSCLAG00000004037	UPF1	99	93.162	ENSGMOG00000007541	upf1	95	94.112	Gadus_morhua
ENSCLAG00000004037	UPF1	99	97.907	ENSGALG00000003220	UPF1	97	95.268	Gallus_gallus
ENSCLAG00000004037	UPF1	67	94.043	ENSGAFG00000015443	-	88	91.758	Gambusia_affinis
ENSCLAG00000004037	UPF1	99	93.061	ENSGAFG00000004831	upf1	95	93.536	Gambusia_affinis
ENSCLAG00000004037	UPF1	99	97.621	ENSGAGG00000022217	UPF1	96	96.204	Gopherus_agassizii
ENSCLAG00000004037	UPF1	100	98.574	ENSGGOG00000002608	UPF1	99	98.574	Gorilla_gorilla
ENSCLAG00000004037	UPF1	86	100.000	ENSHBUG00000008939	upf1	90	100.000	Haplochromis_burtoni
ENSCLAG00000004037	UPF1	86	86.207	ENSHBUG00000014694	upf1	90	86.207	Haplochromis_burtoni
ENSCLAG00000004037	UPF1	100	99.620	ENSHGLG00000010900	UPF1	96	98.244	Heterocephalus_glaber_female
ENSCLAG00000004037	UPF1	100	97.909	ENSHGLG00100005904	UPF1	99	95.937	Heterocephalus_glaber_male
ENSCLAG00000004037	UPF1	99	92.776	ENSHCOG00000008918	upf1	100	92.919	Hippocampus_comes
ENSCLAG00000004037	UPF1	99	94.682	ENSIPUG00000005108	UPF1	95	95.157	Ictalurus_punctatus
ENSCLAG00000004037	UPF1	100	99.810	ENSSTOG00000009196	UPF1	96	98.611	Ictidomys_tridecemlineatus
ENSCLAG00000004037	UPF1	100	98.954	ENSJJAG00000023151	Upf1	96	97.685	Jaculus_jaculus
ENSCLAG00000004037	UPF1	99	93.922	ENSKMAG00000004962	upf1	95	93.922	Kryptolebias_marmoratus
ENSCLAG00000004037	UPF1	99	93.637	ENSLBEG00000027848	-	95	93.732	Labrus_bergylta
ENSCLAG00000004037	UPF1	99	90.628	ENSLBEG00000014862	upf1	95	91.846	Labrus_bergylta
ENSCLAG00000004037	UPF1	66	97.274	ENSLACG00000008482	UPF1	100	97.274	Latimeria_chalumnae
ENSCLAG00000004037	UPF1	99	96.293	ENSLOCG00000002072	upf1	95	96.293	Lepisosteus_oculatus
ENSCLAG00000004037	UPF1	99	99.049	ENSLAFG00000014963	UPF1	96	97.143	Loxodonta_africana
ENSCLAG00000004037	UPF1	100	99.620	ENSMFAG00000037748	UPF1	96	98.336	Macaca_fascicularis
ENSCLAG00000004037	UPF1	100	99.620	ENSMMUG00000023286	UPF1	96	98.519	Macaca_mulatta
ENSCLAG00000004037	UPF1	100	99.620	ENSMNEG00000000046	UPF1	96	98.336	Macaca_nemestrina
ENSCLAG00000004037	UPF1	100	99.620	ENSMLEG00000028404	UPF1	100	99.620	Mandrillus_leucophaeus
ENSCLAG00000004037	UPF1	99	92.972	ENSMAMG00000006231	-	95	93.542	Mastacembelus_armatus
ENSCLAG00000004037	UPF1	99	90.833	ENSMAMG00000006229	upf1	95	91.955	Mastacembelus_armatus
ENSCLAG00000004037	UPF1	99	93.726	ENSMZEG00005016386	-	95	93.726	Maylandia_zebra
ENSCLAG00000004037	UPF1	99	90.841	ENSMZEG00005003489	upf1	95	92.105	Maylandia_zebra
ENSCLAG00000004037	UPF1	99	97.719	ENSMGAG00000004745	UPF1	100	97.719	Meleagris_gallopavo
ENSCLAG00000004037	UPF1	100	99.240	ENSMAUG00000011398	Upf1	98	97.056	Mesocricetus_auratus
ENSCLAG00000004037	UPF1	100	98.669	ENSMICG00000001659	UPF1	96	97.412	Microcebus_murinus
ENSCLAG00000004037	UPF1	100	99.240	ENSMOCG00000005699	Upf1	96	97.963	Microtus_ochrogaster
ENSCLAG00000004037	UPF1	99	92.080	ENSMMOG00000007881	upf1	94	92.564	Mola_mola
ENSCLAG00000004037	UPF1	99	91.548	ENSMMOG00000007537	-	99	91.643	Mola_mola
ENSCLAG00000004037	UPF1	99	98.858	ENSMODG00000003689	UPF1	96	96.964	Monodelphis_domestica
ENSCLAG00000004037	UPF1	99	91.912	ENSMALG00000000144	upf1	95	92.198	Monopterus_albus
ENSCLAG00000004037	UPF1	99	92.533	ENSMALG00000018100	-	95	92.628	Monopterus_albus
ENSCLAG00000004037	UPF1	100	99.049	MGP_CAROLIEiJ_G0031142	Upf1	96	97.870	Mus_caroli
ENSCLAG00000004037	UPF1	100	99.049	ENSMUSG00000058301	Upf1	96	97.870	Mus_musculus
ENSCLAG00000004037	UPF1	100	99.049	MGP_PahariEiJ_G0021607	Upf1	96	97.870	Mus_pahari
ENSCLAG00000004037	UPF1	100	99.049	MGP_SPRETEiJ_G0032260	Upf1	96	97.870	Mus_spretus
ENSCLAG00000004037	UPF1	99	98.573	ENSMPUG00000015516	UPF1	96	97.045	Mustela_putorius_furo
ENSCLAG00000004037	UPF1	99	98.382	ENSMLUG00000012122	UPF1	97	96.055	Myotis_lucifugus
ENSCLAG00000004037	UPF1	100	99.144	ENSNGAG00000024107	Upf1	96	97.874	Nannospalax_galili
ENSCLAG00000004037	UPF1	99	90.066	ENSNBRG00000000670	upf1	95	90.625	Neolamprologus_brichardi
ENSCLAG00000004037	UPF1	99	92.885	ENSNBRG00000022069	-	100	92.885	Neolamprologus_brichardi
ENSCLAG00000004037	UPF1	100	93.821	ENSNLEG00000006062	UPF1	100	93.821	Nomascus_leucogenys
ENSCLAG00000004037	UPF1	82	93.922	ENSMEUG00000014146	-	80	93.922	Notamacropus_eugenii
ENSCLAG00000004037	UPF1	100	90.589	ENSOPRG00000014018	UPF1	100	90.589	Ochotona_princeps
ENSCLAG00000004037	UPF1	100	99.905	ENSODEG00000012426	UPF1	95	99.905	Octodon_degus
ENSCLAG00000004037	UPF1	99	93.821	ENSONIG00000012729	-	95	93.821	Oreochromis_niloticus
ENSCLAG00000004037	UPF1	99	91.121	ENSONIG00000010452	upf1	95	92.387	Oreochromis_niloticus
ENSCLAG00000004037	UPF1	99	98.386	ENSOANG00000004568	UPF1	96	96.494	Ornithorhynchus_anatinus
ENSCLAG00000004037	UPF1	99	93.542	ENSORLG00000008453	upf1	95	93.542	Oryzias_latipes
ENSCLAG00000004037	UPF1	99	93.542	ENSORLG00020014758	upf1	95	93.542	Oryzias_latipes_hni
ENSCLAG00000004037	UPF1	99	93.542	ENSORLG00015010165	upf1	100	89.692	Oryzias_latipes_hsok
ENSCLAG00000004037	UPF1	99	93.542	ENSOMEG00000003665	upf1	95	93.542	Oryzias_melastigma
ENSCLAG00000004037	UPF1	100	98.669	ENSOGAG00000012866	UPF1	96	97.412	Otolemur_garnettii
ENSCLAG00000004037	UPF1	96	99.211	ENSOARG00000010739	UPF1	93	99.211	Ovis_aries
ENSCLAG00000004037	UPF1	100	99.620	ENSPPAG00000043884	UPF1	98	98.597	Pan_paniscus
ENSCLAG00000004037	UPF1	99	99.524	ENSPPRG00000023470	UPF1	96	97.969	Panthera_pardus
ENSCLAG00000004037	UPF1	99	96.384	ENSPTIG00000010159	UPF1	99	96.384	Panthera_tigris_altaica
ENSCLAG00000004037	UPF1	100	99.620	ENSPTRG00000010721	UPF1	96	98.336	Pan_troglodytes
ENSCLAG00000004037	UPF1	100	99.620	ENSPANG00000008847	UPF1	96	98.336	Papio_anubis
ENSCLAG00000004037	UPF1	94	93.731	ENSPKIG00000006069	upf1	91	96.339	Paramormyrops_kingsleyae
ENSCLAG00000004037	UPF1	73	97.908	ENSPSIG00000009491	UPF1	100	97.908	Pelodiscus_sinensis
ENSCLAG00000004037	UPF1	99	90.237	ENSPMGG00000017327	upf1	95	90.445	Periophthalmus_magnuspinnatus
ENSCLAG00000004037	UPF1	100	99.240	ENSPEMG00000001085	Upf1	96	98.056	Peromyscus_maniculatus_bairdii
ENSCLAG00000004037	UPF1	99	89.068	ENSPMAG00000001206	upf1	94	89.068	Petromyzon_marinus
ENSCLAG00000004037	UPF1	99	97.812	ENSPCIG00000006156	UPF1	96	96.307	Phascolarctos_cinereus
ENSCLAG00000004037	UPF1	99	90.772	ENSPLAG00000018155	-	95	90.772	Poecilia_latipinna
ENSCLAG00000004037	UPF1	99	93.156	ENSPLAG00000016232	-	95	93.631	Poecilia_latipinna
ENSCLAG00000004037	UPF1	99	93.251	ENSPMEG00000016319	-	95	93.726	Poecilia_mexicana
ENSCLAG00000004037	UPF1	99	91.176	ENSPMEG00000011443	-	95	91.176	Poecilia_mexicana
ENSCLAG00000004037	UPF1	99	91.268	ENSPREG00000009940	upf1	95	91.020	Poecilia_reticulata
ENSCLAG00000004037	UPF1	99	92.966	ENSPREG00000011247	-	95	93.441	Poecilia_reticulata
ENSCLAG00000004037	UPF1	100	94.297	ENSPPYG00000009752	UPF1	96	92.287	Pongo_abelii
ENSCLAG00000004037	UPF1	72	100.000	ENSPCAG00000012962	UPF1	72	100.000	Procavia_capensis
ENSCLAG00000004037	UPF1	100	99.715	ENSPCOG00000023813	UPF1	96	98.327	Propithecus_coquereli
ENSCLAG00000004037	UPF1	67	100.000	ENSPVAG00000003183	UPF1	65	100.000	Pteropus_vampyrus
ENSCLAG00000004037	UPF1	99	90.841	ENSPNYG00000003694	upf1	95	92.105	Pundamilia_nyererei
ENSCLAG00000004037	UPF1	99	93.726	ENSPNYG00000016731	-	95	93.726	Pundamilia_nyererei
ENSCLAG00000004037	UPF1	99	94.207	ENSPNAG00000025614	upf1	95	94.777	Pygocentrus_nattereri
ENSCLAG00000004037	UPF1	100	99.144	ENSRNOG00000020134	Upf1	96	97.963	Rattus_norvegicus
ENSCLAG00000004037	UPF1	100	97.243	ENSRBIG00000013894	UPF1	98	98.160	Rhinopithecus_bieti
ENSCLAG00000004037	UPF1	100	99.620	ENSRROG00000040935	UPF1	99	98.596	Rhinopithecus_roxellana
ENSCLAG00000004037	UPF1	78	56.348	YMR080C	NAM7	84	56.348	Saccharomyces_cerevisiae
ENSCLAG00000004037	UPF1	99	99.524	ENSSBOG00000023632	UPF1	99	97.679	Saimiri_boliviensis_boliviensis
ENSCLAG00000004037	UPF1	99	98.670	ENSSHAG00000010499	UPF1	100	98.670	Sarcophilus_harrisii
ENSCLAG00000004037	UPF1	99	96.293	ENSSFOG00015021095	upf1	99	96.198	Scleropages_formosus
ENSCLAG00000004037	UPF1	99	93.827	ENSSMAG00000021018	-	95	93.922	Scophthalmus_maximus
ENSCLAG00000004037	UPF1	99	90.253	ENSSMAG00000005055	upf1	95	91.105	Scophthalmus_maximus
ENSCLAG00000004037	UPF1	99	94.017	ENSSDUG00000009629	-	95	94.112	Seriola_dumerili
ENSCLAG00000004037	UPF1	99	91.020	ENSSDUG00000013320	upf1	95	91.955	Seriola_dumerili
ENSCLAG00000004037	UPF1	99	94.017	ENSSLDG00000006878	-	95	94.112	Seriola_lalandi_dorsalis
ENSCLAG00000004037	UPF1	99	91.879	ENSSLDG00000020868	upf1	95	92.271	Seriola_lalandi_dorsalis
ENSCLAG00000004037	UPF1	99	97.716	ENSSPUG00000010538	UPF1	96	95.926	Sphenodon_punctatus
ENSCLAG00000004037	UPF1	99	90.114	ENSSPAG00000000003	upf1	95	90.142	Stegastes_partitus
ENSCLAG00000004037	UPF1	99	93.821	ENSSPAG00000011521	-	95	93.821	Stegastes_partitus
ENSCLAG00000004037	UPF1	99	99.524	ENSSSCG00000039301	UPF1	99	98.478	Sus_scrofa
ENSCLAG00000004037	UPF1	82	91.425	ENSTGUG00000001057	UPF1	95	92.438	Taeniopygia_guttata
ENSCLAG00000004037	UPF1	99	91.912	ENSTRUG00000000150	upf1	96	91.329	Takifugu_rubripes
ENSCLAG00000004037	UPF1	99	92.871	ENSTRUG00000005131	-	95	92.966	Takifugu_rubripes
ENSCLAG00000004037	UPF1	99	94.672	ENSTTRG00000011544	UPF1	95	93.721	Tursiops_truncatus
ENSCLAG00000004037	UPF1	99	98.478	ENSUAMG00000007093	UPF1	96	96.953	Ursus_americanus
ENSCLAG00000004037	UPF1	99	99.524	ENSUMAG00000006652	UPF1	99	98.564	Ursus_maritimus
ENSCLAG00000004037	UPF1	99	98.573	ENSVVUG00000007797	UPF1	96	97.045	Vulpes_vulpes
ENSCLAG00000004037	UPF1	99	83.507	ENSXETG00000013602	upf1	95	81.785	Xenopus_tropicalis
ENSCLAG00000004037	UPF1	99	93.378	ENSXCOG00000005764	-	100	93.858	Xiphophorus_couchianus
ENSCLAG00000004037	UPF1	96	90.936	ENSXCOG00000015275	-	91	90.936	Xiphophorus_couchianus
ENSCLAG00000004037	UPF1	99	91.160	ENSXMAG00000001703	-	95	91.160	Xiphophorus_maculatus
ENSCLAG00000004037	UPF1	99	93.061	ENSXMAG00000002540	-	95	93.536	Xiphophorus_maculatus