EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCLAG00000004116 (Gene tree)
Gene ID: 102016149
Gene Symbol: SNRNP200
Alias: ASCC3L1|BRR2|HELIC2|KIAA0788|RP33|U5-200KD
Full Name: small nuclear ribonucleoprotein U5 subunit 200
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Minus strand
Length: 27294 bases
Position: chrJH721930.1:3828943-3856236
Accession: 102016149
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000005806	ResIII	PF04851.15	7.4e-26	1	2
ENSCLAP00000005806	ResIII	PF04851.15	7.4e-26	2	2
ENSCLAP00000005806	DEAD	PF00270.29	1.4e-52	1	2
ENSCLAP00000005806	DEAD	PF00270.29	1.4e-52	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000005907	SNRNP200-201	7045	XM_005400656	ENSCLAP00000005806	2136 (aa)	XP_005400713	UPI00038F089F

Gene Model

Click here to download ENSCLAG00000004116's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000004116's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCLAG00000004116	SNRNP200	86	42.393	ENSCLAG00000009794	ASCC3	80	44.589
ENSCLAG00000004116	SNRNP200	64	32.893	ENSCLAG00000005173	HFM1	52	32.687

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000004116	SNRNP200	100	99.579	ENSG00000144028	SNRNP200	100	99.579	Homo_sapiens
ENSCLAG00000004116	SNRNP200	99	90.794	ENSAPOG00000010223	snrnp200	99	90.684	Acanthochromis_polyacanthus
ENSCLAG00000004116	SNRNP200	100	99.532	ENSAMEG00000008996	SNRNP200	100	99.532	Ailuropoda_melanoleuca
ENSCLAG00000004116	SNRNP200	97	90.096	ENSACIG00000001764	snrnp200	98	90.096	Amphilophus_citrinellus
ENSCLAG00000004116	SNRNP200	99	90.700	ENSAOCG00000024593	snrnp200	100	89.882	Amphiprion_ocellaris
ENSCLAG00000004116	SNRNP200	97	89.936	ENSAPEG00000012554	snrnp200	100	89.936	Amphiprion_percula
ENSCLAG00000004116	SNRNP200	99	90.653	ENSATEG00000022522	snrnp200	99	90.543	Anabas_testudineus
ENSCLAG00000004116	SNRNP200	99	97.548	ENSAPLG00000004313	SNRNP200	100	97.548	Anas_platyrhynchos
ENSCLAG00000004116	SNRNP200	99	97.206	ENSACAG00000000434	SNRNP200	100	97.206	Anolis_carolinensis
ENSCLAG00000004116	SNRNP200	100	95.009	ENSANAG00000036625	SNRNP200	100	95.429	Aotus_nancymaae
ENSCLAG00000004116	SNRNP200	99	90.465	ENSACLG00000011188	snrnp200	99	90.356	Astatotilapia_calliptera
ENSCLAG00000004116	SNRNP200	99	90.418	ENSAMXG00000005684	snrnp200	99	90.309	Astyanax_mexicanus
ENSCLAG00000004116	SNRNP200	100	99.157	ENSBTAG00000000848	SNRNP200	100	99.157	Bos_taurus
ENSCLAG00000004116	SNRNP200	100	99.532	ENSCJAG00000007514	SNRNP200	100	99.532	Callithrix_jacchus
ENSCLAG00000004116	SNRNP200	100	98.740	ENSCAFG00020019979	SNRNP200	100	99.533	Canis_lupus_dingo
ENSCLAG00000004116	SNRNP200	100	99.345	ENSCHIG00000020611	SNRNP200	100	99.345	Capra_hircus
ENSCLAG00000004116	SNRNP200	100	99.579	ENSTSYG00000010467	SNRNP200	100	99.579	Carlito_syrichta
ENSCLAG00000004116	SNRNP200	99	99.577	ENSCAPG00000017234	SNRNP200	99	99.577	Cavia_aperea
ENSCLAG00000004116	SNRNP200	100	99.860	ENSCPOG00000006776	SNRNP200	100	99.860	Cavia_porcellus
ENSCLAG00000004116	SNRNP200	100	99.532	ENSCCAG00000033962	SNRNP200	100	99.532	Cebus_capucinus
ENSCLAG00000004116	SNRNP200	100	99.579	ENSCATG00000015790	SNRNP200	100	99.579	Cercocebus_atys
ENSCLAG00000004116	SNRNP200	100	99.532	ENSCSAG00000017369	SNRNP200	100	99.532	Chlorocebus_sabaeus
ENSCLAG00000004116	SNRNP200	75	99.213	ENSCHOG00000012981	-	59	99.213	Choloepus_hoffmanni
ENSCLAG00000004116	SNRNP200	100	97.569	ENSCPBG00000022571	SNRNP200	100	97.569	Chrysemys_picta_bellii
ENSCLAG00000004116	SNRNP200	99	76.460	ENSCING00000005082	-	99	76.600	Ciona_intestinalis
ENSCLAG00000004116	SNRNP200	100	94.068	ENSCANG00000033932	SNRNP200	100	99.502	Colobus_angolensis_palliatus
ENSCLAG00000004116	SNRNP200	100	99.532	ENSCGRG00001022610	Snrnp200	100	99.532	Cricetulus_griseus_chok1gshd
ENSCLAG00000004116	SNRNP200	100	98.971	ENSCGRG00000016472	Snrnp200	100	98.971	Cricetulus_griseus_crigri
ENSCLAG00000004116	SNRNP200	100	89.888	ENSCSEG00000016399	snrnp200	100	89.888	Cynoglossus_semilaevis
ENSCLAG00000004116	SNRNP200	100	85.534	ENSCVAG00000017631	snrnp200	99	85.534	Cyprinodon_variegatus
ENSCLAG00000004116	SNRNP200	100	90.169	ENSDARG00000077536	snrnp200	99	90.169	Danio_rerio
ENSCLAG00000004116	SNRNP200	100	98.174	ENSDNOG00000011227	SNRNP200	100	98.174	Dasypus_novemcinctus
ENSCLAG00000004116	SNRNP200	100	96.821	ENSDORG00000005861	Snrnp200	100	96.821	Dipodomys_ordii
ENSCLAG00000004116	SNRNP200	100	74.162	FBgn0263599	l(3)72Ab	99	74.069	Drosophila_melanogaster
ENSCLAG00000004116	SNRNP200	95	99.225	ENSETEG00000000162	SNRNP200	74	99.225	Echinops_telfairi
ENSCLAG00000004116	SNRNP200	83	81.166	ENSEBUG00000016524	snrnp200	95	81.166	Eptatretus_burgeri
ENSCLAG00000004116	SNRNP200	100	98.508	ENSEASG00005001884	SNRNP200	100	98.508	Equus_asinus_asinus
ENSCLAG00000004116	SNRNP200	100	99.625	ENSECAG00000019675	SNRNP200	100	99.625	Equus_caballus
ENSCLAG00000004116	SNRNP200	88	100.000	ENSEEUG00000012178	SNRNP200	93	100.000	Erinaceus_europaeus
ENSCLAG00000004116	SNRNP200	99	90.747	ENSELUG00000018948	snrnp200	99	90.637	Esox_lucius
ENSCLAG00000004116	SNRNP200	100	99.579	ENSFCAG00000010699	SNRNP200	100	99.579	Felis_catus
ENSCLAG00000004116	SNRNP200	93	92.857	ENSFALG00000001368	-	95	92.857	Ficedula_albicollis
ENSCLAG00000004116	SNRNP200	100	99.766	ENSFDAG00000004683	SNRNP200	100	99.766	Fukomys_damarensis
ENSCLAG00000004116	SNRNP200	100	87.734	ENSFHEG00000003786	snrnp200	99	87.734	Fundulus_heteroclitus
ENSCLAG00000004116	SNRNP200	100	89.673	ENSGMOG00000004881	snrnp200	99	89.626	Gadus_morhua
ENSCLAG00000004116	SNRNP200	100	87.968	ENSGAFG00000010807	snrnp200	99	87.968	Gambusia_affinis
ENSCLAG00000004116	SNRNP200	100	89.911	ENSGACG00000011474	snrnp200	99	89.818	Gasterosteus_aculeatus
ENSCLAG00000004116	SNRNP200	95	97.992	ENSGAGG00000016069	SNRNP200	99	97.481	Gopherus_agassizii
ENSCLAG00000004116	SNRNP200	100	99.579	ENSGGOG00000005174	SNRNP200	100	99.579	Gorilla_gorilla
ENSCLAG00000004116	SNRNP200	97	87.673	ENSHBUG00000011322	snrnp200	99	87.720	Haplochromis_burtoni
ENSCLAG00000004116	SNRNP200	100	99.860	ENSHGLG00000006654	SNRNP200	100	99.860	Heterocephalus_glaber_female
ENSCLAG00000004116	SNRNP200	100	99.860	ENSHGLG00100018594	SNRNP200	100	99.860	Heterocephalus_glaber_male
ENSCLAG00000004116	SNRNP200	100	99.532	ENSSTOG00000016351	SNRNP200	100	99.532	Ictidomys_tridecemlineatus
ENSCLAG00000004116	SNRNP200	100	99.391	ENSJJAG00000023659	Snrnp200	100	99.391	Jaculus_jaculus
ENSCLAG00000004116	SNRNP200	100	87.448	ENSKMAG00000003665	snrnp200	99	87.448	Kryptolebias_marmoratus
ENSCLAG00000004116	SNRNP200	100	90.169	ENSLBEG00000021585	snrnp200	99	90.169	Labrus_bergylta
ENSCLAG00000004116	SNRNP200	82	94.664	ENSLACG00000000226	SNRNP200	99	94.664	Latimeria_chalumnae
ENSCLAG00000004116	SNRNP200	100	92.182	ENSLOCG00000015198	snrnp200	99	92.182	Lepisosteus_oculatus
ENSCLAG00000004116	SNRNP200	100	99.438	ENSLAFG00000015626	SNRNP200	100	99.438	Loxodonta_africana
ENSCLAG00000004116	SNRNP200	100	99.532	ENSMFAG00000040174	SNRNP200	100	99.532	Macaca_fascicularis
ENSCLAG00000004116	SNRNP200	100	99.532	ENSMMUG00000023261	SNRNP200	100	99.532	Macaca_mulatta
ENSCLAG00000004116	SNRNP200	100	99.485	ENSMNEG00000032398	SNRNP200	100	99.485	Macaca_nemestrina
ENSCLAG00000004116	SNRNP200	100	99.579	ENSMLEG00000019083	SNRNP200	100	99.579	Mandrillus_leucophaeus
ENSCLAG00000004116	SNRNP200	100	90.126	ENSMAMG00000007851	snrnp200	99	90.080	Mastacembelus_armatus
ENSCLAG00000004116	SNRNP200	97	87.673	ENSMZEG00005010787	snrnp200	99	87.720	Maylandia_zebra
ENSCLAG00000004116	SNRNP200	97	97.097	ENSMGAG00000001831	SNRNP200	100	97.097	Meleagris_gallopavo
ENSCLAG00000004116	SNRNP200	100	99.485	ENSMAUG00000011825	Snrnp200	100	99.485	Mesocricetus_auratus
ENSCLAG00000004116	SNRNP200	100	99.532	ENSMICG00000004710	SNRNP200	100	99.532	Microcebus_murinus
ENSCLAG00000004116	SNRNP200	100	96.910	ENSMOCG00000011814	Snrnp200	100	96.910	Microtus_ochrogaster
ENSCLAG00000004116	SNRNP200	99	88.915	ENSMMOG00000014167	snrnp200	99	88.811	Mola_mola
ENSCLAG00000004116	SNRNP200	100	98.830	ENSMODG00000008475	SNRNP200	100	98.830	Monodelphis_domestica
ENSCLAG00000004116	SNRNP200	99	90.700	ENSMALG00000001973	snrnp200	99	90.590	Monopterus_albus
ENSCLAG00000004116	SNRNP200	100	99.391	MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.391	Mus_caroli
ENSCLAG00000004116	SNRNP200	100	99.438	ENSMUSG00000003660	Snrnp200	100	99.438	Mus_musculus
ENSCLAG00000004116	SNRNP200	100	99.485	MGP_PahariEiJ_G0025695	Snrnp200	100	99.485	Mus_pahari
ENSCLAG00000004116	SNRNP200	100	99.438	MGP_SPRETEiJ_G0025170	Snrnp200	100	99.448	Mus_spretus
ENSCLAG00000004116	SNRNP200	100	99.579	ENSMPUG00000008949	SNRNP200	100	99.579	Mustela_putorius_furo
ENSCLAG00000004116	SNRNP200	100	98.925	ENSMLUG00000010493	SNRNP200	100	98.925	Myotis_lucifugus
ENSCLAG00000004116	SNRNP200	100	95.178	ENSMLUG00000027511	-	100	95.178	Myotis_lucifugus
ENSCLAG00000004116	SNRNP200	100	99.579	ENSNGAG00000021993	Snrnp200	100	99.579	Nannospalax_galili
ENSCLAG00000004116	SNRNP200	90	90.203	ENSNBRG00000017960	snrnp200	98	90.203	Neolamprologus_brichardi
ENSCLAG00000004116	SNRNP200	100	94.933	ENSNLEG00000000025	SNRNP200	100	94.985	Nomascus_leucogenys
ENSCLAG00000004116	SNRNP200	100	100.000	ENSMEUG00000010532	SNRNP200	79	100.000	Notamacropus_eugenii
ENSCLAG00000004116	SNRNP200	100	95.646	ENSOPRG00000015464	SNRNP200	100	95.646	Ochotona_princeps
ENSCLAG00000004116	SNRNP200	100	99.906	ENSODEG00000008366	SNRNP200	100	99.906	Octodon_degus
ENSCLAG00000004116	SNRNP200	99	90.465	ENSONIG00000010714	snrnp200	99	90.356	Oreochromis_niloticus
ENSCLAG00000004116	SNRNP200	100	99.438	ENSOCUG00000009864	SNRNP200	100	99.438	Oryctolagus_cuniculus
ENSCLAG00000004116	SNRNP200	100	90.215	ENSORLG00000012286	snrnp200	100	90.215	Oryzias_latipes
ENSCLAG00000004116	SNRNP200	100	90.262	ENSORLG00020004648	snrnp200	100	90.262	Oryzias_latipes_hni
ENSCLAG00000004116	SNRNP200	100	90.215	ENSORLG00015019114	snrnp200	100	90.236	Oryzias_latipes_hsok
ENSCLAG00000004116	SNRNP200	99	90.465	ENSOMEG00000011834	snrnp200	99	90.356	Oryzias_melastigma
ENSCLAG00000004116	SNRNP200	100	99.579	ENSOGAG00000006879	SNRNP200	100	99.579	Otolemur_garnettii
ENSCLAG00000004116	SNRNP200	100	98.315	ENSOARG00000013949	SNRNP200	100	98.315	Ovis_aries
ENSCLAG00000004116	SNRNP200	100	99.579	ENSPPAG00000041559	SNRNP200	100	99.579	Pan_paniscus
ENSCLAG00000004116	SNRNP200	100	99.579	ENSPPRG00000004435	SNRNP200	100	99.579	Panthera_pardus
ENSCLAG00000004116	SNRNP200	100	99.110	ENSPTIG00000006380	SNRNP200	100	99.110	Panthera_tigris_altaica
ENSCLAG00000004116	SNRNP200	100	99.579	ENSPTRG00000012230	SNRNP200	100	99.579	Pan_troglodytes
ENSCLAG00000004116	SNRNP200	100	99.625	ENSPANG00000006017	SNRNP200	100	99.625	Papio_anubis
ENSCLAG00000004116	SNRNP200	100	91.011	ENSPKIG00000014762	snrnp200	99	91.011	Paramormyrops_kingsleyae
ENSCLAG00000004116	SNRNP200	100	96.537	ENSPSIG00000008580	SNRNP200	100	96.537	Pelodiscus_sinensis
ENSCLAG00000004116	SNRNP200	100	98.736	ENSPCIG00000023050	SNRNP200	100	98.736	Phascolarctos_cinereus
ENSCLAG00000004116	SNRNP200	100	90.267	ENSPFOG00000015110	snrnp200	99	90.267	Poecilia_formosa
ENSCLAG00000004116	SNRNP200	97	90.055	ENSPLAG00000006711	snrnp200	99	90.055	Poecilia_latipinna
ENSCLAG00000004116	SNRNP200	97	90.000	ENSPMEG00000021166	snrnp200	99	90.000	Poecilia_mexicana
ENSCLAG00000004116	SNRNP200	100	90.356	ENSPREG00000008875	snrnp200	99	90.356	Poecilia_reticulata
ENSCLAG00000004116	SNRNP200	100	99.579	ENSPPYG00000012068	SNRNP200	100	99.579	Pongo_abelii
ENSCLAG00000004116	SNRNP200	97	97.436	ENSPCAG00000008536	SNRNP200	89	97.436	Procavia_capensis
ENSCLAG00000004116	SNRNP200	100	99.579	ENSPCOG00000024608	SNRNP200	100	99.579	Propithecus_coquereli
ENSCLAG00000004116	SNRNP200	96	100.000	ENSPVAG00000005860	SNRNP200	93	100.000	Pteropus_vampyrus
ENSCLAG00000004116	SNRNP200	99	85.948	ENSPNYG00000017476	snrnp200	99	85.854	Pundamilia_nyererei
ENSCLAG00000004116	SNRNP200	100	85.908	ENSPNAG00000010998	snrnp200	99	85.908	Pygocentrus_nattereri
ENSCLAG00000004116	SNRNP200	100	99.485	ENSRNOG00000012157	Snrnp200	100	99.485	Rattus_norvegicus
ENSCLAG00000004116	SNRNP200	100	99.579	ENSRBIG00000044690	-	100	99.579	Rhinopithecus_bieti
ENSCLAG00000004116	SNRNP200	100	99.579	ENSRROG00000037952	-	100	99.579	Rhinopithecus_roxellana
ENSCLAG00000004116	SNRNP200	100	99.532	ENSSBOG00000035471	SNRNP200	100	99.532	Saimiri_boliviensis_boliviensis
ENSCLAG00000004116	SNRNP200	97	98.645	ENSSHAG00000000758	SNRNP200	100	98.645	Sarcophilus_harrisii
ENSCLAG00000004116	SNRNP200	99	91.498	ENSSFOG00015018826	snrnp200	99	91.386	Scleropages_formosus
ENSCLAG00000004116	SNRNP200	99	90.371	ENSSMAG00000005463	snrnp200	99	90.262	Scophthalmus_maximus
ENSCLAG00000004116	SNRNP200	99	90.653	ENSSDUG00000021410	snrnp200	99	90.543	Seriola_dumerili
ENSCLAG00000004116	SNRNP200	99	90.606	ENSSLDG00000010884	snrnp200	99	90.496	Seriola_lalandi_dorsalis
ENSCLAG00000004116	SNRNP200	95	98.928	ENSSARG00000010728	SNRNP200	96	98.928	Sorex_araneus
ENSCLAG00000004116	SNRNP200	100	97.285	ENSSPUG00000003726	-	100	97.285	Sphenodon_punctatus
ENSCLAG00000004116	SNRNP200	99	90.700	ENSSPAG00000001842	snrnp200	99	90.590	Stegastes_partitus
ENSCLAG00000004116	SNRNP200	100	99.391	ENSSSCG00000008127	SNRNP200	100	99.391	Sus_scrofa
ENSCLAG00000004116	SNRNP200	99	87.914	ENSTGUG00000014475	-	100	87.914	Taeniopygia_guttata
ENSCLAG00000004116	SNRNP200	99	90.324	ENSTRUG00000001307	snrnp200	99	90.215	Takifugu_rubripes
ENSCLAG00000004116	SNRNP200	100	85.724	ENSTNIG00000004320	snrnp200	100	85.724	Tetraodon_nigroviridis
ENSCLAG00000004116	SNRNP200	82	100.000	ENSTBEG00000003329	-	67	100.000	Tupaia_belangeri
ENSCLAG00000004116	SNRNP200	100	99.204	ENSTTRG00000004983	SNRNP200	100	99.204	Tursiops_truncatus
ENSCLAG00000004116	SNRNP200	75	92.442	ENSUAMG00000008395	-	95	92.442	Ursus_americanus
ENSCLAG00000004116	SNRNP200	100	99.579	ENSUMAG00000012385	SNRNP200	100	99.579	Ursus_maritimus
ENSCLAG00000004116	SNRNP200	90	100.000	ENSVPAG00000006434	SNRNP200	69	100.000	Vicugna_pacos
ENSCLAG00000004116	SNRNP200	100	99.346	ENSVVUG00000026247	SNRNP200	100	99.346	Vulpes_vulpes
ENSCLAG00000004116	SNRNP200	100	94.296	ENSXETG00000001243	snrnp200	100	94.296	Xenopus_tropicalis
ENSCLAG00000004116	SNRNP200	97	90.310	ENSXMAG00000002058	snrnp200	98	90.310	Xiphophorus_maculatus