EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCLAG00000005173 (Gene tree)
Gene ID: 102028767
Gene Symbol: HFM1
Alias: FLJ36760|FLJ39011|MER3|SEC63D1
Full Name: HFM1%2C ATP dependent DNA helicase homolog
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Plus strand
Length: 95343 bases
Position: chrJH721883.1:2993682-3089024
Accession: 102028767
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000007355	ResIII	PF04851.15	1.1e-11	1	1
ENSCLAP00000007354	ResIII	PF04851.15	1.1e-11	1	1
ENSCLAP00000007355	DEAD	PF00270.29	4.2e-26	1	1
ENSCLAP00000007354	DEAD	PF00270.29	4.3e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000007471	HFM1-201	5436	XM_005385067	ENSCLAP00000007354	1482 (aa)	XP_005385124	UPI000697EBCA
ENSCLAT00000007472	HFM1-202	5388	XM_013514357	ENSCLAP00000007355	1466 (aa)	XP_013369811	-

Gene Model

Click here to download ENSCLAG00000005173's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000005173's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCLAG00000005173	HFM1	52	32.687	ENSCLAG00000004116	SNRNP200	64	32.893
ENSCLAG00000005173	HFM1	50	34.796	ENSCLAG00000009794	ASCC3	61	34.796

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000005173	HFM1	99	81.242	ENSG00000162669	HFM1	100	81.242	Homo_sapiens
ENSCLAG00000005173	HFM1	56	66.304	ENSAPOG00000005304	hfm1	95	66.304	Acanthochromis_polyacanthus
ENSCLAG00000005173	HFM1	99	80.040	ENSAMEG00000000432	HFM1	100	80.040	Ailuropoda_melanoleuca
ENSCLAG00000005173	HFM1	72	57.553	ENSACIG00000021553	hfm1	93	57.553	Amphilophus_citrinellus
ENSCLAG00000005173	HFM1	56	66.223	ENSAOCG00000022839	hfm1	96	67.677	Amphiprion_ocellaris
ENSCLAG00000005173	HFM1	56	65.981	ENSAPEG00000014316	hfm1	96	67.848	Amphiprion_percula
ENSCLAG00000005173	HFM1	71	58.652	ENSATEG00000019181	hfm1	91	57.799	Anabas_testudineus
ENSCLAG00000005173	HFM1	99	58.317	ENSAPLG00000013639	HFM1	100	58.317	Anas_platyrhynchos
ENSCLAG00000005173	HFM1	99	78.369	ENSANAG00000029513	HFM1	100	78.369	Aotus_nancymaae
ENSCLAG00000005173	HFM1	72	56.325	ENSACLG00000009033	hfm1	97	64.642	Astatotilapia_calliptera
ENSCLAG00000005173	HFM1	72	59.584	ENSAMXG00000006108	hfm1	76	59.584	Astyanax_mexicanus
ENSCLAG00000005173	HFM1	99	79.313	ENSBTAG00000020856	HFM1	100	79.313	Bos_taurus
ENSCLAG00000005173	HFM1	99	79.217	ENSCJAG00000001843	HFM1	100	79.217	Callithrix_jacchus
ENSCLAG00000005173	HFM1	98	82.067	ENSCAFG00000020187	HFM1	99	82.067	Canis_familiaris
ENSCLAG00000005173	HFM1	99	79.946	ENSTSYG00000014250	HFM1	100	79.946	Carlito_syrichta
ENSCLAG00000005173	HFM1	99	85.095	ENSCPOG00000007421	HFM1	99	85.095	Cavia_porcellus
ENSCLAG00000005173	HFM1	99	79.285	ENSCCAG00000033206	HFM1	100	79.285	Cebus_capucinus
ENSCLAG00000005173	HFM1	99	80.634	ENSCATG00000030987	HFM1	100	80.634	Cercocebus_atys
ENSCLAG00000005173	HFM1	61	90.789	ENSCHOG00000011824	-	71	90.789	Choloepus_hoffmanni
ENSCLAG00000005173	HFM1	99	70.719	ENSCGRG00001016995	Hfm1	100	70.719	Cricetulus_griseus_chok1gshd
ENSCLAG00000005173	HFM1	99	74.747	ENSCGRG00000017181	Hfm1	100	74.747	Cricetulus_griseus_crigri
ENSCLAG00000005173	HFM1	63	62.632	ENSCSEG00000017659	hfm1	87	62.764	Cynoglossus_semilaevis
ENSCLAG00000005173	HFM1	75	55.313	ENSDARG00000104288	hfm1	97	55.313	Danio_rerio
ENSCLAG00000005173	HFM1	99	79.043	ENSDNOG00000004776	HFM1	100	79.043	Dasypus_novemcinctus
ENSCLAG00000005173	HFM1	99	75.234	ENSDORG00000014661	Hfm1	100	75.234	Dipodomys_ordii
ENSCLAG00000005173	HFM1	71	83.096	ENSEASG00005015424	HFM1	97	83.096	Equus_asinus_asinus
ENSCLAG00000005173	HFM1	99	83.030	ENSECAG00000024039	HFM1	100	83.030	Equus_caballus
ENSCLAG00000005173	HFM1	61	66.593	ENSELUG00000018944	hfm1	97	66.593	Esox_lucius
ENSCLAG00000005173	HFM1	99	80.660	ENSFCAG00000029116	HFM1	100	80.660	Felis_catus
ENSCLAG00000005173	HFM1	99	57.483	ENSFALG00000001781	HFM1	100	57.933	Ficedula_albicollis
ENSCLAG00000005173	HFM1	99	88.560	ENSFDAG00000020816	HFM1	100	88.560	Fukomys_damarensis
ENSCLAG00000005173	HFM1	64	60.021	ENSGMOG00000017436	hfm1	99	60.021	Gadus_morhua
ENSCLAG00000005173	HFM1	72	58.279	ENSGAFG00000018093	hfm1	94	66.382	Gambusia_affinis
ENSCLAG00000005173	HFM1	64	60.892	ENSGACG00000015686	hfm1	100	60.892	Gasterosteus_aculeatus
ENSCLAG00000005173	HFM1	99	81.377	ENSGGOG00000038524	HFM1	100	81.377	Gorilla_gorilla
ENSCLAG00000005173	HFM1	63	63.627	ENSHBUG00000007309	hfm1	96	57.525	Haplochromis_burtoni
ENSCLAG00000005173	HFM1	54	64.743	ENSHCOG00000019632	hfm1	97	64.743	Hippocampus_comes
ENSCLAG00000005173	HFM1	63	64.952	ENSIPUG00000017020	hfm1	92	66.748	Ictalurus_punctatus
ENSCLAG00000005173	HFM1	97	81.531	ENSJJAG00000017198	Hfm1	100	81.531	Jaculus_jaculus
ENSCLAG00000005173	HFM1	60	62.111	ENSKMAG00000002282	hfm1	91	62.111	Kryptolebias_marmoratus
ENSCLAG00000005173	HFM1	64	61.273	ENSLBEG00000006759	hfm1	98	64.558	Labrus_bergylta
ENSCLAG00000005173	HFM1	71	66.076	ENSLACG00000010698	HFM1	100	66.170	Latimeria_chalumnae
ENSCLAG00000005173	HFM1	73	61.765	ENSLOCG00000004931	hfm1	96	61.983	Lepisosteus_oculatus
ENSCLAG00000005173	HFM1	50	86.962	ENSLAFG00000015903	-	100	86.962	Loxodonta_africana
ENSCLAG00000005173	HFM1	99	77.942	ENSMFAG00000003649	HFM1	100	77.942	Macaca_fascicularis
ENSCLAG00000005173	HFM1	99	80.499	ENSMMUG00000006819	HFM1	100	80.499	Macaca_mulatta
ENSCLAG00000005173	HFM1	55	66.461	ENSMAMG00000004623	hfm1	97	66.461	Mastacembelus_armatus
ENSCLAG00000005173	HFM1	71	56.901	ENSMZEG00005004679	hfm1	97	64.642	Maylandia_zebra
ENSCLAG00000005173	HFM1	53	77.296	ENSMGAG00000008437	HFM1	98	77.296	Meleagris_gallopavo
ENSCLAG00000005173	HFM1	99	74.527	ENSMAUG00000018858	Hfm1	100	74.527	Mesocricetus_auratus
ENSCLAG00000005173	HFM1	99	80.040	ENSMICG00000037935	HFM1	100	80.040	Microcebus_murinus
ENSCLAG00000005173	HFM1	99	72.635	ENSMOCG00000014812	Hfm1	100	72.635	Microtus_ochrogaster
ENSCLAG00000005173	HFM1	58	65.485	ENSMMOG00000006148	hfm1	95	65.485	Mola_mola
ENSCLAG00000005173	HFM1	63	62.927	ENSMALG00000002401	hfm1	95	66.221	Monopterus_albus
ENSCLAG00000005173	HFM1	94	74.089	MGP_CAROLIEiJ_G0027496	Hfm1	100	74.089	Mus_caroli
ENSCLAG00000005173	HFM1	99	74.189	ENSMUSG00000043410	Hfm1	100	74.189	Mus_musculus
ENSCLAG00000005173	HFM1	99	74.189	MGP_PahariEiJ_G0017268	Hfm1	100	74.189	Mus_pahari
ENSCLAG00000005173	HFM1	99	73.716	MGP_SPRETEiJ_G0028495	Hfm1	100	73.716	Mus_spretus
ENSCLAG00000005173	HFM1	99	80.337	ENSMPUG00000004594	HFM1	100	80.337	Mustela_putorius_furo
ENSCLAG00000005173	HFM1	99	78.167	ENSMLUG00000010200	HFM1	100	78.167	Myotis_lucifugus
ENSCLAG00000005173	HFM1	70	55.386	ENSNBRG00000002910	hfm1	97	65.266	Neolamprologus_brichardi
ENSCLAG00000005173	HFM1	99	77.471	ENSNLEG00000010285	HFM1	100	77.471	Nomascus_leucogenys
ENSCLAG00000005173	HFM1	81	85.321	ENSMEUG00000015788	HFM1	80	85.321	Notamacropus_eugenii
ENSCLAG00000005173	HFM1	84	75.983	ENSOPRG00000013916	HFM1	84	75.983	Ochotona_princeps
ENSCLAG00000005173	HFM1	66	62.892	ENSONIG00000010590	hfm1	99	59.300	Oreochromis_niloticus
ENSCLAG00000005173	HFM1	54	66.332	ENSORLG00000026844	hfm1	99	66.332	Oryzias_latipes
ENSCLAG00000005173	HFM1	65	56.282	ENSORLG00020002951	hfm1	97	48.284	Oryzias_latipes_hni
ENSCLAG00000005173	HFM1	73	57.748	ENSOMEG00000016474	hfm1	75	57.748	Oryzias_melastigma
ENSCLAG00000005173	HFM1	83	83.727	ENSOGAG00000032369	HFM1	100	83.727	Otolemur_garnettii
ENSCLAG00000005173	HFM1	99	78.976	ENSOARG00000015812	HFM1	100	78.976	Ovis_aries
ENSCLAG00000005173	HFM1	92	82.713	ENSPPAG00000024582	HFM1	100	82.713	Pan_paniscus
ENSCLAG00000005173	HFM1	99	80.795	ENSPPRG00000003270	HFM1	100	80.795	Panthera_pardus
ENSCLAG00000005173	HFM1	99	80.660	ENSPTIG00000018881	HFM1	100	80.660	Panthera_tigris_altaica
ENSCLAG00000005173	HFM1	99	81.242	ENSPTRG00000000948	HFM1	100	81.242	Pan_troglodytes
ENSCLAG00000005173	HFM1	99	80.634	ENSPANG00000009838	HFM1	100	80.634	Papio_anubis
ENSCLAG00000005173	HFM1	60	66.742	ENSPKIG00000003810	hfm1	95	68.227	Paramormyrops_kingsleyae
ENSCLAG00000005173	HFM1	55	66.049	ENSPMGG00000011059	hfm1	99	66.049	Periophthalmus_magnuspinnatus
ENSCLAG00000005173	HFM1	99	75.541	ENSPEMG00000022852	Hfm1	100	75.541	Peromyscus_maniculatus_bairdii
ENSCLAG00000005173	HFM1	99	66.577	ENSPCIG00000014233	HFM1	100	66.577	Phascolarctos_cinereus
ENSCLAG00000005173	HFM1	71	60.056	ENSPFOG00000017194	hfm1	100	59.944	Poecilia_formosa
ENSCLAG00000005173	HFM1	63	65.032	ENSPLAG00000000571	hfm1	85	65.032	Poecilia_latipinna
ENSCLAG00000005173	HFM1	63	64.475	ENSPMEG00000019475	hfm1	86	64.475	Poecilia_mexicana
ENSCLAG00000005173	HFM1	63	64.801	ENSPREG00000007803	hfm1	94	65.976	Poecilia_reticulata
ENSCLAG00000005173	HFM1	99	80.972	ENSPPYG00000001163	HFM1	100	80.972	Pongo_abelii
ENSCLAG00000005173	HFM1	74	73.991	ENSPCAG00000004289	-	74	73.991	Procavia_capensis
ENSCLAG00000005173	HFM1	99	71.072	ENSPVAG00000009713	HFM1	100	71.072	Pteropus_vampyrus
ENSCLAG00000005173	HFM1	63	62.446	ENSPNYG00000001795	hfm1	97	64.642	Pundamilia_nyererei
ENSCLAG00000005173	HFM1	57	67.904	ENSPNAG00000010865	hfm1	84	67.904	Pygocentrus_nattereri
ENSCLAG00000005173	HFM1	99	72.770	ENSRNOG00000023299	Hfm1	100	72.770	Rattus_norvegicus
ENSCLAG00000005173	HFM1	99	80.499	ENSRROG00000045569	HFM1	100	80.499	Rhinopithecus_roxellana
ENSCLAG00000005173	HFM1	94	83.002	ENSSBOG00000027456	HFM1	99	83.002	Saimiri_boliviensis_boliviensis
ENSCLAG00000005173	HFM1	58	69.143	ENSSHAG00000014616	-	99	69.143	Sarcophilus_harrisii
ENSCLAG00000005173	HFM1	99	50.065	ENSSFOG00015020129	hfm1	100	50.065	Scleropages_formosus
ENSCLAG00000005173	HFM1	60	63.818	ENSSMAG00000006907	hfm1	86	63.818	Scophthalmus_maximus
ENSCLAG00000005173	HFM1	55	66.296	ENSSDUG00000011424	hfm1	93	66.296	Seriola_dumerili
ENSCLAG00000005173	HFM1	55	66.339	ENSSLDG00000016386	hfm1	92	66.339	Seriola_lalandi_dorsalis
ENSCLAG00000005173	HFM1	64	59.431	ENSSPAG00000001023	hfm1	95	66.948	Stegastes_partitus
ENSCLAG00000005173	HFM1	99	80.000	ENSSSCG00000006912	HFM1	100	80.000	Sus_scrofa
ENSCLAG00000005173	HFM1	64	75.235	ENSTGUG00000006172	HFM1	100	75.235	Taeniopygia_guttata
ENSCLAG00000005173	HFM1	99	75.946	ENSTTRG00000013933	HFM1	100	75.946	Tursiops_truncatus
ENSCLAG00000005173	HFM1	93	78.939	ENSVPAG00000011331	HFM1	93	78.939	Vicugna_pacos
ENSCLAG00000005173	HFM1	71	83.017	ENSVVUG00000020760	HFM1	99	83.017	Vulpes_vulpes
ENSCLAG00000005173	HFM1	56	66.748	ENSXMAG00000004178	hfm1	92	66.748	Xiphophorus_maculatus