EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCLAG00000005241 (Gene tree)
Gene ID: 102006258
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Minus strand
Length: 67470 bases
Position: chrJH721957.1:575340-642809
Accession: 102006258
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000007460	RRM_1	PF00076.22	9.8e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000007577	PSPC1-201	1350	XM_005406291	ENSCLAP00000007460	449 (aa)	XP_005406348	-

Gene Model

Click here to download ENSCLAG00000005241's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000005241's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCLAG00000005241	PSPC1	85	55.897	ENSCLAG00000009583	-	80	67.832
ENSCLAG00000005241	PSPC1	92	58.151	ENSCLAG00000003642	NONO	65	67.846

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000005241	PSPC1	99	88.121	ENSG00000121390	PSPC1	88	88.121	Homo_sapiens
ENSCLAG00000005241	PSPC1	89	70.361	ENSAPOG00000015946	pspc1	67	74.185	Acanthochromis_polyacanthus
ENSCLAG00000005241	PSPC1	99	88.121	ENSAMEG00000017420	PSPC1	88	88.121	Ailuropoda_melanoleuca
ENSCLAG00000005241	PSPC1	92	58.199	ENSACIG00000018695	pspc1	76	56.532	Amphilophus_citrinellus
ENSCLAG00000005241	PSPC1	89	69.065	ENSAOCG00000005279	pspc1	66	73.641	Amphiprion_ocellaris
ENSCLAG00000005241	PSPC1	89	70.343	ENSAPEG00000015927	pspc1	67	73.641	Amphiprion_percula
ENSCLAG00000005241	PSPC1	89	55.746	ENSATEG00000004878	pspc1	64	60.623	Anabas_testudineus
ENSCLAG00000005241	PSPC1	89	59.305	ENSAPLG00000003643	SFPQ	57	68.647	Anas_platyrhynchos
ENSCLAG00000005241	PSPC1	89	93.766	ENSAPLG00000006246	PSPC1	99	94.000	Anas_platyrhynchos
ENSCLAG00000005241	PSPC1	99	82.013	ENSACAG00000002093	PSPC1	88	82.441	Anolis_carolinensis
ENSCLAG00000005241	PSPC1	99	87.905	ENSANAG00000000059	PSPC1	88	87.905	Aotus_nancymaae
ENSCLAG00000005241	PSPC1	89	60.644	ENSACLG00000027220	pspc1	77	55.875	Astatotilapia_calliptera
ENSCLAG00000005241	PSPC1	92	67.916	ENSAMXG00000036881	pspc1	70	71.688	Astyanax_mexicanus
ENSCLAG00000005241	PSPC1	99	87.905	ENSBTAG00000003934	PSPC1	89	87.905	Bos_taurus
ENSCLAG00000005241	PSPC1	99	87.905	ENSCJAG00000004554	PSPC1	88	87.905	Callithrix_jacchus
ENSCLAG00000005241	PSPC1	99	88.121	ENSCAFG00020002009	PSPC1	88	88.121	Canis_lupus_dingo
ENSCLAG00000005241	PSPC1	99	87.905	ENSCHIG00000016708	PSPC1	89	87.905	Capra_hircus
ENSCLAG00000005241	PSPC1	91	90.488	ENSTSYG00000032882	PSPC1	89	88.366	Carlito_syrichta
ENSCLAG00000005241	PSPC1	99	88.553	ENSCPOG00000000395	PSPC1	89	88.553	Cavia_porcellus
ENSCLAG00000005241	PSPC1	99	87.905	ENSCCAG00000033498	PSPC1	88	87.905	Cebus_capucinus
ENSCLAG00000005241	PSPC1	99	87.905	ENSCATG00000036434	PSPC1	88	87.905	Cercocebus_atys
ENSCLAG00000005241	PSPC1	99	81.857	ENSCHOG00000008913	PSPC1	88	81.641	Choloepus_hoffmanni
ENSCLAG00000005241	PSPC1	99	83.836	ENSCPBG00000020859	PSPC1	89	83.656	Chrysemys_picta_bellii
ENSCLAG00000005241	PSPC1	91	85.012	ENSCANG00000018948	PSPC1	87	100.000	Colobus_angolensis_palliatus
ENSCLAG00000005241	PSPC1	99	87.473	ENSCGRG00001018368	Pspc1	88	87.473	Cricetulus_griseus_chok1gshd
ENSCLAG00000005241	PSPC1	99	87.473	ENSCGRG00000011724	Pspc1	88	87.473	Cricetulus_griseus_crigri
ENSCLAG00000005241	PSPC1	97	61.778	ENSCVAG00000007679	-	69	66.931	Cyprinodon_variegatus
ENSCLAG00000005241	PSPC1	89	70.976	ENSDARG00000006621	pspc1	99	68.613	Danio_rerio
ENSCLAG00000005241	PSPC1	99	87.689	ENSDNOG00000011078	PSPC1	88	87.689	Dasypus_novemcinctus
ENSCLAG00000005241	PSPC1	99	89.278	ENSDORG00000016050	Pspc1	88	88.889	Dipodomys_ordii
ENSCLAG00000005241	PSPC1	64	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSCLAG00000005241	PSPC1	50	48.606	ENSEBUG00000010133	pspc1	57	52.273	Eptatretus_burgeri
ENSCLAG00000005241	PSPC1	100	53.653	ENSEBUG00000003964	-	51	73.498	Eptatretus_burgeri
ENSCLAG00000005241	PSPC1	99	88.121	ENSEASG00005000119	PSPC1	89	88.121	Equus_asinus_asinus
ENSCLAG00000005241	PSPC1	99	88.121	ENSECAG00000017286	PSPC1	89	88.121	Equus_caballus
ENSCLAG00000005241	PSPC1	87	88.525	ENSEEUG00000011288	-	77	69.084	Erinaceus_europaeus
ENSCLAG00000005241	PSPC1	89	70.803	ENSELUG00000003746	pspc1	63	83.525	Esox_lucius
ENSCLAG00000005241	PSPC1	99	88.337	ENSFCAG00000027841	PSPC1	88	88.337	Felis_catus
ENSCLAG00000005241	PSPC1	99	84.267	ENSFALG00000008750	PSPC1	88	83.906	Ficedula_albicollis
ENSCLAG00000005241	PSPC1	99	88.553	ENSFDAG00000002617	PSPC1	90	88.553	Fukomys_damarensis
ENSCLAG00000005241	PSPC1	89	65.099	ENSGMOG00000015074	pspc1	74	64.268	Gadus_morhua
ENSCLAG00000005241	PSPC1	99	84.267	ENSGALG00000017142	PSPC1	89	84.086	Gallus_gallus
ENSCLAG00000005241	PSPC1	61	77.536	ENSGAFG00000006327	pspc1	57	77.536	Gambusia_affinis
ENSCLAG00000005241	PSPC1	89	64.677	ENSGACG00000014901	pspc1	74	73.962	Gasterosteus_aculeatus
ENSCLAG00000005241	PSPC1	99	83.836	ENSGAGG00000019164	PSPC1	89	83.656	Gopherus_agassizii
ENSCLAG00000005241	PSPC1	99	88.337	ENSGGOG00000003414	PSPC1	88	88.337	Gorilla_gorilla
ENSCLAG00000005241	PSPC1	89	69.554	ENSHBUG00000001139	pspc1	77	68.029	Haplochromis_burtoni
ENSCLAG00000005241	PSPC1	99	88.553	ENSHGLG00000018811	PSPC1	89	88.553	Heterocephalus_glaber_female
ENSCLAG00000005241	PSPC1	61	83.103	ENSHGLG00100007962	PSPC1	88	83.103	Heterocephalus_glaber_male
ENSCLAG00000005241	PSPC1	76	67.055	ENSHCOG00000013251	pspc1	70	69.937	Hippocampus_comes
ENSCLAG00000005241	PSPC1	89	72.861	ENSIPUG00000013192	pspc1	76	72.861	Ictalurus_punctatus
ENSCLAG00000005241	PSPC1	99	87.905	ENSSTOG00000026833	PSPC1	88	87.905	Ictidomys_tridecemlineatus
ENSCLAG00000005241	PSPC1	99	87.473	ENSJJAG00000018334	Pspc1	88	87.473	Jaculus_jaculus
ENSCLAG00000005241	PSPC1	92	52.785	ENSKMAG00000013525	-	73	51.084	Kryptolebias_marmoratus
ENSCLAG00000005241	PSPC1	91	65.278	ENSLBEG00000004474	pspc1	65	71.781	Labrus_bergylta
ENSCLAG00000005241	PSPC1	89	86.000	ENSLACG00000010762	PSPC1	78	84.223	Latimeria_chalumnae
ENSCLAG00000005241	PSPC1	89	85.714	ENSLOCG00000010832	pspc1	78	85.714	Lepisosteus_oculatus
ENSCLAG00000005241	PSPC1	99	88.121	ENSLAFG00000010968	PSPC1	88	88.121	Loxodonta_africana
ENSCLAG00000005241	PSPC1	100	87.527	ENSMFAG00000032728	PSPC1	89	87.527	Macaca_fascicularis
ENSCLAG00000005241	PSPC1	100	87.527	ENSMMUG00000020262	PSPC1	89	87.527	Macaca_mulatta
ENSCLAG00000005241	PSPC1	100	87.527	ENSMNEG00000027401	PSPC1	89	87.527	Macaca_nemestrina
ENSCLAG00000005241	PSPC1	89	98.246	ENSMLEG00000039043	PSPC1	94	98.246	Mandrillus_leucophaeus
ENSCLAG00000005241	PSPC1	92	66.207	ENSMAMG00000004333	pspc1	67	70.526	Mastacembelus_armatus
ENSCLAG00000005241	PSPC1	89	60.644	ENSMZEG00005005726	pspc1	77	55.875	Maylandia_zebra
ENSCLAG00000005241	PSPC1	89	93.766	ENSMGAG00000015134	PSPC1	99	94.000	Meleagris_gallopavo
ENSCLAG00000005241	PSPC1	86	80.597	ENSMAUG00000021067	Pspc1	86	80.597	Mesocricetus_auratus
ENSCLAG00000005241	PSPC1	99	87.905	ENSMICG00000013970	PSPC1	88	87.905	Microcebus_murinus
ENSCLAG00000005241	PSPC1	100	87.097	ENSMOCG00000006060	Pspc1	89	87.097	Microtus_ochrogaster
ENSCLAG00000005241	PSPC1	91	86.588	ENSMODG00000008029	PSPC1	68	86.588	Monodelphis_domestica
ENSCLAG00000005241	PSPC1	89	69.059	ENSMALG00000008914	pspc1	75	67.241	Monopterus_albus
ENSCLAG00000005241	PSPC1	100	86.910	MGP_CAROLIEiJ_G0019341	Pspc1	89	86.910	Mus_caroli
ENSCLAG00000005241	PSPC1	100	87.124	ENSMUSG00000021938	Pspc1	89	87.124	Mus_musculus
ENSCLAG00000005241	PSPC1	100	86.910	MGP_PahariEiJ_G0030359	Pspc1	89	86.910	Mus_pahari
ENSCLAG00000005241	PSPC1	100	87.124	MGP_SPRETEiJ_G0020232	Pspc1	89	87.124	Mus_spretus
ENSCLAG00000005241	PSPC1	99	88.121	ENSMPUG00000013347	PSPC1	88	88.121	Mustela_putorius_furo
ENSCLAG00000005241	PSPC1	99	87.124	ENSMLUG00000017663	PSPC1	89	87.124	Myotis_lucifugus
ENSCLAG00000005241	PSPC1	99	88.337	ENSNGAG00000011271	Pspc1	88	88.337	Nannospalax_galili
ENSCLAG00000005241	PSPC1	58	73.004	ENSNBRG00000014059	pspc1	64	66.667	Neolamprologus_brichardi
ENSCLAG00000005241	PSPC1	99	88.121	ENSNLEG00000001294	PSPC1	88	88.121	Nomascus_leucogenys
ENSCLAG00000005241	PSPC1	81	75.000	ENSMEUG00000000476	PSPC1	73	74.242	Notamacropus_eugenii
ENSCLAG00000005241	PSPC1	89	85.500	ENSODEG00000019012	-	76	87.500	Octodon_degus
ENSCLAG00000005241	PSPC1	99	76.242	ENSODEG00000007817	-	88	71.762	Octodon_degus
ENSCLAG00000005241	PSPC1	89	69.802	ENSONIG00000012010	pspc1	77	67.299	Oreochromis_niloticus
ENSCLAG00000005241	PSPC1	89	96.992	ENSOANG00000009017	-	100	96.992	Ornithorhynchus_anatinus
ENSCLAG00000005241	PSPC1	92	68.039	ENSOANG00000011381	-	79	64.428	Ornithorhynchus_anatinus
ENSCLAG00000005241	PSPC1	99	87.905	ENSOCUG00000006153	PSPC1	88	87.905	Oryctolagus_cuniculus
ENSCLAG00000005241	PSPC1	92	68.019	ENSORLG00000004232	-	76	62.587	Oryzias_latipes
ENSCLAG00000005241	PSPC1	92	67.303	ENSORLG00020000578	PSPC1	76	63.466	Oryzias_latipes_hni
ENSCLAG00000005241	PSPC1	92	68.496	ENSORLG00015017480	pspc1	72	67.442	Oryzias_latipes_hsok
ENSCLAG00000005241	PSPC1	99	88.337	ENSOGAG00000012643	PSPC1	88	88.337	Otolemur_garnettii
ENSCLAG00000005241	PSPC1	99	88.017	ENSOARG00000014163	PSPC1	94	88.017	Ovis_aries
ENSCLAG00000005241	PSPC1	99	81.425	ENSPPAG00000009836	PSPC1	97	81.425	Pan_paniscus
ENSCLAG00000005241	PSPC1	99	88.337	ENSPPRG00000008833	PSPC1	88	88.337	Panthera_pardus
ENSCLAG00000005241	PSPC1	89	98.250	ENSPTIG00000016917	PSPC1	84	98.250	Panthera_tigris_altaica
ENSCLAG00000005241	PSPC1	98	86.123	ENSPTRG00000005677	PSPC1	88	86.123	Pan_troglodytes
ENSCLAG00000005241	PSPC1	99	87.905	ENSPANG00000001992	PSPC1	88	87.905	Papio_anubis
ENSCLAG00000005241	PSPC1	81	78.512	ENSPKIG00000003578	pspc1	68	77.989	Paramormyrops_kingsleyae
ENSCLAG00000005241	PSPC1	99	83.621	ENSPSIG00000005168	PSPC1	88	83.441	Pelodiscus_sinensis
ENSCLAG00000005241	PSPC1	51	77.093	ENSPMGG00000015135	pspc1	62	76.991	Periophthalmus_magnuspinnatus
ENSCLAG00000005241	PSPC1	99	87.689	ENSPEMG00000015214	Pspc1	88	87.689	Peromyscus_maniculatus_bairdii
ENSCLAG00000005241	PSPC1	99	87.257	ENSPCIG00000017680	PSPC1	88	87.257	Phascolarctos_cinereus
ENSCLAG00000005241	PSPC1	92	67.696	ENSPFOG00000003362	pspc1	78	66.667	Poecilia_formosa
ENSCLAG00000005241	PSPC1	92	67.696	ENSPLAG00000011540	pspc1	77	66.667	Poecilia_latipinna
ENSCLAG00000005241	PSPC1	92	67.458	ENSPMEG00000008322	pspc1	77	66.430	Poecilia_mexicana
ENSCLAG00000005241	PSPC1	92	67.696	ENSPREG00000007786	pspc1	77	66.667	Poecilia_reticulata
ENSCLAG00000005241	PSPC1	99	87.905	ENSPPYG00000005186	PSPC1	88	87.905	Pongo_abelii
ENSCLAG00000005241	PSPC1	99	83.153	ENSPCOG00000014364	PSPC1	88	83.153	Propithecus_coquereli
ENSCLAG00000005241	PSPC1	99	85.961	ENSPVAG00000005036	PSPC1	89	85.961	Pteropus_vampyrus
ENSCLAG00000005241	PSPC1	89	60.644	ENSPNYG00000008893	pspc1	77	55.875	Pundamilia_nyererei
ENSCLAG00000005241	PSPC1	89	71.883	ENSPNAG00000016511	pspc1	77	72.127	Pygocentrus_nattereri
ENSCLAG00000005241	PSPC1	99	87.473	ENSRNOG00000020782	Pspc1	88	87.473	Rattus_norvegicus
ENSCLAG00000005241	PSPC1	99	88.121	ENSRBIG00000036057	PSPC1	95	88.121	Rhinopithecus_bieti
ENSCLAG00000005241	PSPC1	99	88.121	ENSRROG00000036334	PSPC1	88	88.121	Rhinopithecus_roxellana
ENSCLAG00000005241	PSPC1	89	90.250	ENSSBOG00000028172	PSPC1	89	97.426	Saimiri_boliviensis_boliviensis
ENSCLAG00000005241	PSPC1	99	81.505	ENSSHAG00000004696	PSPC1	88	81.505	Sarcophilus_harrisii
ENSCLAG00000005241	PSPC1	81	79.890	ENSSFOG00015001395	pspc1	78	77.513	Scleropages_formosus
ENSCLAG00000005241	PSPC1	92	65.734	ENSSMAG00000001761	pspc1	69	76.157	Scophthalmus_maximus
ENSCLAG00000005241	PSPC1	89	68.213	ENSSDUG00000010651	pspc1	76	67.285	Seriola_dumerili
ENSCLAG00000005241	PSPC1	89	63.092	ENSSLDG00000004284	pspc1	68	60.377	Seriola_lalandi_dorsalis
ENSCLAG00000005241	PSPC1	100	80.645	ENSSARG00000000888	PSPC1	89	80.645	Sorex_araneus
ENSCLAG00000005241	PSPC1	99	70.323	ENSSPUG00000008550	PSPC1	88	70.538	Sphenodon_punctatus
ENSCLAG00000005241	PSPC1	89	68.085	ENSSPAG00000001921	pspc1	66	73.098	Stegastes_partitus
ENSCLAG00000005241	PSPC1	99	88.121	ENSSSCG00000009569	PSPC1	88	88.121	Sus_scrofa
ENSCLAG00000005241	PSPC1	99	84.267	ENSTGUG00000011295	PSPC1	99	84.267	Taeniopygia_guttata
ENSCLAG00000005241	PSPC1	92	61.995	ENSTRUG00000011335	pspc1	67	64.820	Takifugu_rubripes
ENSCLAG00000005241	PSPC1	92	63.942	ENSTNIG00000010358	pspc1	75	64.611	Tetraodon_nigroviridis
ENSCLAG00000005241	PSPC1	89	82.707	ENSTBEG00000002361	PSPC1	77	80.702	Tupaia_belangeri
ENSCLAG00000005241	PSPC1	99	88.121	ENSTTRG00000003343	PSPC1	89	88.121	Tursiops_truncatus
ENSCLAG00000005241	PSPC1	61	83.162	ENSUAMG00000012309	PSPC1	83	83.162	Ursus_americanus
ENSCLAG00000005241	PSPC1	99	87.905	ENSUMAG00000013993	PSPC1	95	87.905	Ursus_maritimus
ENSCLAG00000005241	PSPC1	89	98.246	ENSVPAG00000010029	PSPC1	100	98.246	Vicugna_pacos
ENSCLAG00000005241	PSPC1	99	88.121	ENSVVUG00000006414	PSPC1	88	88.121	Vulpes_vulpes
ENSCLAG00000005241	PSPC1	61	76.449	ENSXCOG00000017438	pspc1	65	76.449	Xiphophorus_couchianus
ENSCLAG00000005241	PSPC1	61	76.812	ENSXMAG00000007929	pspc1	65	76.812	Xiphophorus_maculatus