EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCLAG00000005846 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Minus strand
Length: 47317 bases
Position: chrJH721931.1:12136010-12183326
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000008351	DND1_DSRM	PF14709.7	1.6e-28	1	1
ENSCLAP00000008349	DND1_DSRM	PF14709.7	1.9e-28	1	1
ENSCLAP00000008350	DND1_DSRM	PF14709.7	2.4e-28	1	1
ENSCLAP00000008351	RRM_1	PF00076.22	9.4e-36	1	3
ENSCLAP00000008351	RRM_1	PF00076.22	9.4e-36	2	3
ENSCLAP00000008351	RRM_1	PF00076.22	9.4e-36	3	3
ENSCLAP00000008349	RRM_1	PF00076.22	1.1e-35	1	3
ENSCLAP00000008349	RRM_1	PF00076.22	1.1e-35	2	3
ENSCLAP00000008349	RRM_1	PF00076.22	1.1e-35	3	3
ENSCLAP00000008350	RRM_1	PF00076.22	1.6e-35	1	3
ENSCLAP00000008350	RRM_1	PF00076.22	1.6e-35	2	3
ENSCLAP00000008350	RRM_1	PF00076.22	1.6e-35	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000008477	-	1602	-	ENSCLAP00000008350	533 (aa)	-	UPI00038F0589
ENSCLAT00000008476	-	3610	-	ENSCLAP00000008349	485 (aa)	-	UPI00038E94BF
ENSCLAT00000008478	-	1413	-	ENSCLAP00000008351	470 (aa)	-	UPI00038EFB44

Gene Model

Click here to download ENSCLAG00000005846's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000005846's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCLAG00000005846	-	63	56.667	ENSCLAG00000012738	HNRNPR	54	50.980
ENSCLAG00000005846	-	99	69.427	ENSCLAG00000010424	A1CF	88	69.427
ENSCLAG00000005846	-	64	73.000	ENSCLAG00000001684	RBM47	84	77.273
ENSCLAG00000005846	-	53	31.655	ENSCLAG00000009857	TIA1	74	31.655
ENSCLAG00000005846	-	99	94.979	ENSCLAG00000011886	-	99	90.927
ENSCLAG00000005846	-	63	54.333	ENSCLAG00000011851	SYNCRIP	53	53.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000005846	-	100	96.289	ENSG00000151962	RBM46	100	99.248	Homo_sapiens
ENSCLAG00000005846	-	97	65.665	ENSAPOG00000009209	rbm46	90	65.665	Acanthochromis_polyacanthus
ENSCLAG00000005846	-	99	96.360	ENSAMEG00000013290	RBM46	100	94.559	Ailuropoda_melanoleuca
ENSCLAG00000005846	-	99	59.539	ENSACIG00000014500	rbm46	91	59.748	Amphilophus_citrinellus
ENSCLAG00000005846	-	95	66.143	ENSAOCG00000001892	-	99	60.526	Amphiprion_ocellaris
ENSCLAG00000005846	-	95	66.143	ENSAPEG00000017762	rbm46	97	66.143	Amphiprion_percula
ENSCLAG00000005846	-	97	63.974	ENSATEG00000010775	rbm46	98	58.700	Anabas_testudineus
ENSCLAG00000005846	-	99	86.724	ENSAPLG00000005116	RBM46	100	86.724	Anas_platyrhynchos
ENSCLAG00000005846	-	99	89.722	ENSACAG00000015599	RBM46	100	86.867	Anolis_carolinensis
ENSCLAG00000005846	-	100	94.894	ENSANAG00000029193	RBM46	100	94.894	Aotus_nancymaae
ENSCLAG00000005846	-	95	64.254	ENSACLG00000016153	rbm46	94	59.232	Astatotilapia_calliptera
ENSCLAG00000005846	-	95	62.741	ENSAMXG00000020892	-	99	60.075	Astyanax_mexicanus
ENSCLAG00000005846	-	96	66.297	ENSAMXG00000009397	rbm46	98	66.297	Astyanax_mexicanus
ENSCLAG00000005846	-	100	95.670	ENSBTAG00000001696	RBM46	100	95.670	Bos_taurus
ENSCLAG00000005846	-	100	95.319	ENSCJAG00000001768	RBM46	100	95.319	Callithrix_jacchus
ENSCLAG00000005846	-	100	96.907	ENSCAFG00000008473	RBM46	100	96.907	Canis_familiaris
ENSCLAG00000005846	-	99	96.788	ENSCAFG00020002468	RBM46	100	95.122	Canis_lupus_dingo
ENSCLAG00000005846	-	100	95.670	ENSCHIG00000000502	RBM46	100	95.670	Capra_hircus
ENSCLAG00000005846	-	100	95.957	ENSTSYG00000010435	RBM46	100	95.957	Carlito_syrichta
ENSCLAG00000005846	-	100	97.732	ENSCAPG00000011928	-	100	97.732	Cavia_aperea
ENSCLAG00000005846	-	79	91.599	ENSCAPG00000011841	-	99	91.599	Cavia_aperea
ENSCLAG00000005846	-	99	92.888	ENSCPOG00000020396	-	95	92.842	Cavia_porcellus
ENSCLAG00000005846	-	99	94.004	ENSCPOG00000019272	-	100	92.565	Cavia_porcellus
ENSCLAG00000005846	-	100	97.872	ENSCPOG00000010284	-	100	97.872	Cavia_porcellus
ENSCLAG00000005846	-	100	96.289	ENSCCAG00000027619	-	100	96.289	Cebus_capucinus
ENSCLAG00000005846	-	99	80.126	ENSCCAG00000001323	-	99	80.000	Cebus_capucinus
ENSCLAG00000005846	-	100	95.670	ENSCATG00000040148	RBM46	100	95.670	Cercocebus_atys
ENSCLAG00000005846	-	99	95.931	ENSCSAG00000003263	RBM46	100	94.747	Chlorocebus_sabaeus
ENSCLAG00000005846	-	99	95.931	ENSCHOG00000003429	RBM46	100	93.621	Choloepus_hoffmanni
ENSCLAG00000005846	-	95	92.360	ENSCPBG00000009314	RBM46	97	92.360	Chrysemys_picta_bellii
ENSCLAG00000005846	-	100	95.319	ENSCANG00000039065	RBM46	100	95.319	Colobus_angolensis_palliatus
ENSCLAG00000005846	-	100	95.745	ENSCGRG00001016714	Rbm46	100	95.745	Cricetulus_griseus_chok1gshd
ENSCLAG00000005846	-	100	95.745	ENSCGRG00000011738	Rbm46	100	95.745	Cricetulus_griseus_crigri
ENSCLAG00000005846	-	95	58.259	ENSCSEG00000005530	rbm46	96	58.259	Cynoglossus_semilaevis
ENSCLAG00000005846	-	98	62.338	ENSCVAG00000021013	rbm46	97	61.814	Cyprinodon_variegatus
ENSCLAG00000005846	-	96	67.028	ENSDARG00000079452	rbm46	99	63.740	Danio_rerio
ENSCLAG00000005846	-	99	96.146	ENSDNOG00000016195	RBM46	100	94.559	Dasypus_novemcinctus
ENSCLAG00000005846	-	100	96.170	ENSDORG00000006405	Rbm46	100	96.170	Dipodomys_ordii
ENSCLAG00000005846	-	99	94.218	ENSETEG00000014902	RBM46	100	89.869	Echinops_telfairi
ENSCLAG00000005846	-	99	94.861	ENSEASG00005015821	RBM46	100	93.058	Equus_asinus_asinus
ENSCLAG00000005846	-	100	95.052	ENSECAG00000007649	RBM46	100	95.052	Equus_caballus
ENSCLAG00000005846	-	99	92.934	ENSEEUG00000011824	RBM46	100	91.557	Erinaceus_europaeus
ENSCLAG00000005846	-	78	71.935	ENSELUG00000008166	rbm46	94	71.935	Esox_lucius
ENSCLAG00000005846	-	100	95.957	ENSFCAG00000029812	RBM46	100	95.957	Felis_catus
ENSCLAG00000005846	-	99	85.075	ENSFALG00000013157	RBM46	95	83.023	Ficedula_albicollis
ENSCLAG00000005846	-	99	91.649	ENSFDAG00000006445	-	95	91.632	Fukomys_damarensis
ENSCLAG00000005846	-	100	93.996	ENSFDAG00000019281	-	100	93.996	Fukomys_damarensis
ENSCLAG00000005846	-	84	62.060	ENSFHEG00000013257	rbm46	87	62.060	Fundulus_heteroclitus
ENSCLAG00000005846	-	99	78.846	ENSGALG00000009278	RBM46	100	78.059	Gallus_gallus
ENSCLAG00000005846	-	61	80.702	ENSGAFG00000020245	rbm46	89	80.139	Gambusia_affinis
ENSCLAG00000005846	-	99	92.291	ENSGAGG00000002019	RBM46	95	88.176	Gopherus_agassizii
ENSCLAG00000005846	-	100	96.082	ENSGGOG00000001876	RBM46	100	96.082	Gorilla_gorilla
ENSCLAG00000005846	-	95	61.298	ENSHBUG00000009609	rbm46	91	65.877	Haplochromis_burtoni
ENSCLAG00000005846	-	94	82.273	ENSHGLG00000010742	-	99	74.187	Heterocephalus_glaber_female
ENSCLAG00000005846	-	99	81.156	ENSHGLG00000002940	-	99	80.952	Heterocephalus_glaber_female
ENSCLAG00000005846	-	96	93.805	ENSHGLG00000002463	-	99	96.536	Heterocephalus_glaber_female
ENSCLAG00000005846	-	99	77.137	ENSHGLG00100018987	-	99	77.290	Heterocephalus_glaber_male
ENSCLAG00000005846	-	100	96.383	ENSHGLG00100012752	-	100	96.383	Heterocephalus_glaber_male
ENSCLAG00000005846	-	94	82.273	ENSHGLG00100004977	-	99	74.187	Heterocephalus_glaber_male
ENSCLAG00000005846	-	98	50.630	ENSHCOG00000012998	rbm46	94	50.630	Hippocampus_comes
ENSCLAG00000005846	-	99	66.112	ENSIPUG00000024038	rbm46	98	64.634	Ictalurus_punctatus
ENSCLAG00000005846	-	100	96.701	ENSSTOG00000007918	RBM46	100	96.701	Ictidomys_tridecemlineatus
ENSCLAG00000005846	-	100	94.639	ENSJJAG00000003902	Rbm46	100	94.639	Jaculus_jaculus
ENSCLAG00000005846	-	99	63.713	ENSKMAG00000015127	rbm46	100	58.932	Kryptolebias_marmoratus
ENSCLAG00000005846	-	99	87.366	ENSLACG00000002062	RBM46	100	85.206	Latimeria_chalumnae
ENSCLAG00000005846	-	96	76.000	ENSLOCG00000008298	rbm46	96	76.339	Lepisosteus_oculatus
ENSCLAG00000005846	-	99	95.940	ENSLAFG00000015448	RBM46	100	95.940	Loxodonta_africana
ENSCLAG00000005846	-	100	96.082	ENSMFAG00000043485	RBM46	100	96.082	Macaca_fascicularis
ENSCLAG00000005846	-	100	96.082	ENSMMUG00000021147	RBM46	100	96.082	Macaca_mulatta
ENSCLAG00000005846	-	100	96.082	ENSMNEG00000002787	RBM46	100	96.082	Macaca_nemestrina
ENSCLAG00000005846	-	100	95.464	ENSMLEG00000029756	RBM46	100	95.464	Mandrillus_leucophaeus
ENSCLAG00000005846	-	95	66.075	ENSMAMG00000009093	rbm46	96	63.190	Mastacembelus_armatus
ENSCLAG00000005846	-	95	64.811	ENSMZEG00005027849	rbm46	94	64.114	Maylandia_zebra
ENSCLAG00000005846	-	99	79.060	ENSMGAG00000001457	RBM46	99	79.060	Meleagris_gallopavo
ENSCLAG00000005846	-	100	95.745	ENSMAUG00000009911	Rbm46	100	95.745	Mesocricetus_auratus
ENSCLAG00000005846	-	100	95.876	ENSMICG00000042747	RBM46	100	95.876	Microcebus_murinus
ENSCLAG00000005846	-	100	96.383	ENSMOCG00000001188	Rbm46	100	96.383	Microtus_ochrogaster
ENSCLAG00000005846	-	96	62.963	ENSMMOG00000011214	rbm46	97	58.065	Mola_mola
ENSCLAG00000005846	-	99	95.931	ENSMODG00000001302	RBM46	100	86.106	Monodelphis_domestica
ENSCLAG00000005846	-	94	62.528	ENSMALG00000006185	rbm46	93	62.217	Monopterus_albus
ENSCLAG00000005846	-	100	95.957	MGP_CAROLIEiJ_G0025101	Rbm46	100	95.957	Mus_caroli
ENSCLAG00000005846	-	100	95.532	ENSMUSG00000033882	Rbm46	100	95.532	Mus_musculus
ENSCLAG00000005846	-	100	95.957	MGP_PahariEiJ_G0026544	Rbm46	100	95.957	Mus_pahari
ENSCLAG00000005846	-	100	95.319	MGP_SPRETEiJ_G0026043	Rbm46	100	95.319	Mus_spretus
ENSCLAG00000005846	-	100	96.701	ENSMPUG00000005670	RBM46	100	96.701	Mustela_putorius_furo
ENSCLAG00000005846	-	99	95.726	ENSMLUG00000003221	RBM46	100	94.195	Myotis_lucifugus
ENSCLAG00000005846	-	100	95.745	ENSNGAG00000004231	Rbm46	100	95.670	Nannospalax_galili
ENSCLAG00000005846	-	95	65.324	ENSNBRG00000000273	rbm46	84	65.324	Neolamprologus_brichardi
ENSCLAG00000005846	-	100	95.876	ENSNLEG00000006184	RBM46	100	95.876	Nomascus_leucogenys
ENSCLAG00000005846	-	89	95.913	ENSMEUG00000013328	RBM46	99	95.854	Notamacropus_eugenii
ENSCLAG00000005846	-	60	97.173	ENSOPRG00000007136	RBM46	100	97.173	Ochotona_princeps
ENSCLAG00000005846	-	99	94.142	ENSODEG00000018002	-	93	94.142	Octodon_degus
ENSCLAG00000005846	-	100	96.170	ENSODEG00000000735	-	100	96.170	Octodon_degus
ENSCLAG00000005846	-	95	66.075	ENSONIG00000014096	rbm46	100	64.103	Oreochromis_niloticus
ENSCLAG00000005846	-	99	89.103	ENSOANG00000002141	RBM46	100	86.831	Ornithorhynchus_anatinus
ENSCLAG00000005846	-	99	96.360	ENSOCUG00000017859	RBM46	100	94.371	Oryctolagus_cuniculus
ENSCLAG00000005846	-	99	61.277	ENSORLG00000002429	rbm46	97	57.143	Oryzias_latipes
ENSCLAG00000005846	-	99	61.359	ENSORLG00020022154	rbm46	97	57.326	Oryzias_latipes_hni
ENSCLAG00000005846	-	98	62.527	ENSORLG00015020234	rbm46	95	62.105	Oryzias_latipes_hsok
ENSCLAG00000005846	-	95	61.810	ENSOMEG00000022580	rbm46	99	57.443	Oryzias_melastigma
ENSCLAG00000005846	-	99	96.360	ENSOGAG00000005647	RBM46	100	94.747	Otolemur_garnettii
ENSCLAG00000005846	-	100	95.464	ENSOARG00000016406	RBM46	100	95.464	Ovis_aries
ENSCLAG00000005846	-	100	96.082	ENSPPAG00000043236	RBM46	100	96.082	Pan_paniscus
ENSCLAG00000005846	-	100	95.745	ENSPPRG00000009416	RBM46	100	95.745	Panthera_pardus
ENSCLAG00000005846	-	100	95.745	ENSPTIG00000017449	RBM46	100	95.745	Panthera_tigris_altaica
ENSCLAG00000005846	-	100	96.082	ENSPTRG00000016538	RBM46	100	96.082	Pan_troglodytes
ENSCLAG00000005846	-	100	96.082	ENSPANG00000004186	RBM46	100	96.082	Papio_anubis
ENSCLAG00000005846	-	99	69.742	ENSPKIG00000015334	rbm46	92	66.667	Paramormyrops_kingsleyae
ENSCLAG00000005846	-	100	92.340	ENSPSIG00000006429	RBM46	99	89.571	Pelodiscus_sinensis
ENSCLAG00000005846	-	95	81.273	ENSPMGG00000019872	rbm46	97	81.273	Periophthalmus_magnuspinnatus
ENSCLAG00000005846	-	100	95.745	ENSPEMG00000013899	Rbm46	100	95.745	Peromyscus_maniculatus_bairdii
ENSCLAG00000005846	-	100	95.876	ENSPCIG00000029626	RBM46	100	95.876	Phascolarctos_cinereus
ENSCLAG00000005846	-	84	79.181	ENSPFOG00000001079	rbm46	73	78.644	Poecilia_formosa
ENSCLAG00000005846	-	99	63.214	ENSPLAG00000004541	rbm46	98	57.810	Poecilia_latipinna
ENSCLAG00000005846	-	99	63.214	ENSPMEG00000015724	rbm46	92	65.198	Poecilia_mexicana
ENSCLAG00000005846	-	99	63.214	ENSPREG00000014464	rbm46	98	64.119	Poecilia_reticulata
ENSCLAG00000005846	-	99	95.717	ENSPPYG00000015144	RBM46	100	94.184	Pongo_abelii
ENSCLAG00000005846	-	99	88.865	ENSPCAG00000003110	RBM46	99	86.842	Procavia_capensis
ENSCLAG00000005846	-	100	95.464	ENSPCOG00000024347	RBM46	100	95.464	Propithecus_coquereli
ENSCLAG00000005846	-	99	96.788	ENSPVAG00000008376	RBM46	100	94.747	Pteropus_vampyrus
ENSCLAG00000005846	-	95	68.113	ENSPNAG00000025312	rbm46	99	63.465	Pygocentrus_nattereri
ENSCLAG00000005846	-	99	95.931	ENSRNOG00000025823	Rbm46	100	94.184	Rattus_norvegicus
ENSCLAG00000005846	-	100	95.745	ENSRBIG00000032583	RBM46	100	95.745	Rhinopithecus_bieti
ENSCLAG00000005846	-	100	95.532	ENSRROG00000044288	RBM46	100	95.532	Rhinopithecus_roxellana
ENSCLAG00000005846	-	100	96.082	ENSSBOG00000033028	RBM46	100	96.082	Saimiri_boliviensis_boliviensis
ENSCLAG00000005846	-	99	95.931	ENSSHAG00000012596	RBM46	100	93.996	Sarcophilus_harrisii
ENSCLAG00000005846	-	98	72.113	ENSSFOG00015000087	rbm46	98	67.871	Scleropages_formosus
ENSCLAG00000005846	-	95	63.087	ENSSMAG00000017042	rbm46	93	63.087	Scophthalmus_maximus
ENSCLAG00000005846	-	97	66.450	ENSSDUG00000020645	rbm46	89	66.450	Seriola_dumerili
ENSCLAG00000005846	-	99	96.574	ENSSARG00000006520	RBM46	100	94.934	Sorex_araneus
ENSCLAG00000005846	-	99	92.077	ENSSPUG00000012525	-	100	88.433	Sphenodon_punctatus
ENSCLAG00000005846	-	99	90.171	ENSSPUG00000004773	-	98	90.171	Sphenodon_punctatus
ENSCLAG00000005846	-	96	62.693	ENSSPAG00000013697	rbm46	97	61.456	Stegastes_partitus
ENSCLAG00000005846	-	100	96.082	ENSSSCG00000008994	RBM46	100	96.082	Sus_scrofa
ENSCLAG00000005846	-	99	83.298	ENSTGUG00000005307	RBM46	100	83.298	Taeniopygia_guttata
ENSCLAG00000005846	-	97	63.319	ENSTRUG00000004237	rbm46	91	63.319	Takifugu_rubripes
ENSCLAG00000005846	-	97	61.422	ENSTNIG00000008714	rbm46	88	60.211	Tetraodon_nigroviridis
ENSCLAG00000005846	-	99	93.362	ENSTBEG00000013949	RBM46	100	90.807	Tupaia_belangeri
ENSCLAG00000005846	-	99	94.433	ENSTTRG00000001239	RBM46	100	93.246	Tursiops_truncatus
ENSCLAG00000005846	-	100	96.701	ENSUAMG00000026593	RBM46	100	96.701	Ursus_americanus
ENSCLAG00000005846	-	100	96.495	ENSUMAG00000016442	RBM46	100	96.495	Ursus_maritimus
ENSCLAG00000005846	-	100	96.701	ENSVVUG00000024957	RBM46	100	96.701	Vulpes_vulpes
ENSCLAG00000005846	-	79	72.358	ENSXETG00000032067	-	100	71.816	Xenopus_tropicalis
ENSCLAG00000005846	-	99	77.088	ENSXETG00000022412	-	99	73.546	Xenopus_tropicalis
ENSCLAG00000005846	-	99	56.780	ENSXETG00000032344	-	100	55.762	Xenopus_tropicalis
ENSCLAG00000005846	-	95	64.783	ENSXMAG00000008237	rbm46	93	63.598	Xiphophorus_maculatus