EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCLAG00000005906 (Gene tree)
Gene ID: 102004430
Gene Symbol: RBM38
Alias: HSRNASEB|RNPC1|SEB4D|dJ800J21.2|seb4B
Full Name: RNA binding motif protein 38
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Minus strand
Length: 16016 bases
Position: chrJH721905.1:2036124-2052139
Accession: 102004430
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000008435	RRM_1	PF00076.22	3e-18	1	1
ENSCLAP00000008436	RRM_1	PF00076.22	3e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000008563	RBM38-202	696	-	ENSCLAP00000008436	231 (aa)	-	-
ENSCLAT00000008562	RBM38-201	2029	XM_005392253	ENSCLAP00000008435	230 (aa)	XP_005392310	-
ENSCLAT00000008564	RBM38-203	90	-	ENSCLAP00000008437	29 (aa)	-	UPI00021CF755

Gene Model

Click here to download ENSCLAG00000005906's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000005906's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCLAG00000005906	RBM38	61	36.842	ENSCLAG00000011329	MSI1	72	36.842
ENSCLAG00000005906	RBM38	94	63.136	ENSCLAG00000002136	RBM24	100	67.647

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000005906	RBM38	100	96.087	ENSG00000132819	RBM38	100	94.937	Homo_sapiens
ENSCLAG00000005906	RBM38	94	66.063	ENSAPOG00000009939	-	94	66.667	Acanthochromis_polyacanthus
ENSCLAG00000005906	RBM38	94	59.072	ENSAPOG00000003301	rbm38	93	59.072	Acanthochromis_polyacanthus
ENSCLAG00000005906	RBM38	94	56.723	ENSACIG00000000010	rbm38	93	56.723	Amphilophus_citrinellus
ENSCLAG00000005906	RBM38	92	68.349	ENSACIG00000012502	-	100	88.034	Amphilophus_citrinellus
ENSCLAG00000005906	RBM38	94	59.072	ENSAOCG00000013497	-	93	59.072	Amphiprion_ocellaris
ENSCLAG00000005906	RBM38	96	64.159	ENSAOCG00000012559	RBM38	93	65.198	Amphiprion_ocellaris
ENSCLAG00000005906	RBM38	94	63.025	ENSAPEG00000023581	-	95	63.866	Amphiprion_percula
ENSCLAG00000005906	RBM38	92	63.721	ENSAPEG00000013137	rbm38	93	59.072	Amphiprion_percula
ENSCLAG00000005906	RBM38	94	61.161	ENSATEG00000016366	rbm38	94	61.161	Anabas_testudineus
ENSCLAG00000005906	RBM38	92	64.681	ENSATEG00000016710	-	92	65.517	Anabas_testudineus
ENSCLAG00000005906	RBM38	94	77.727	ENSACAG00000016238	RBM38	97	74.468	Anolis_carolinensis
ENSCLAG00000005906	RBM38	94	95.833	ENSANAG00000031959	RBM38	100	95.833	Aotus_nancymaae
ENSCLAG00000005906	RBM38	92	65.368	ENSACLG00000019514	-	92	65.948	Astatotilapia_calliptera
ENSCLAG00000005906	RBM38	80	64.324	ENSAMXG00000038120	rbm38	76	64.865	Astyanax_mexicanus
ENSCLAG00000005906	RBM38	82	74.211	ENSAMXG00000015601	-	95	67.391	Astyanax_mexicanus
ENSCLAG00000005906	RBM38	100	93.913	ENSBTAG00000008105	RBM38	96	93.913	Bos_taurus
ENSCLAG00000005906	RBM38	60	62.319	WBGene00006321	sup-12	59	85.393	Caenorhabditis_elegans
ENSCLAG00000005906	RBM38	100	95.217	ENSCJAG00000019139	RBM38	93	100.000	Callithrix_jacchus
ENSCLAG00000005906	RBM38	100	95.217	ENSCAFG00020021943	RBM38	96	95.217	Canis_lupus_dingo
ENSCLAG00000005906	RBM38	100	93.043	ENSCHIG00000002609	RBM38	96	93.043	Capra_hircus
ENSCLAG00000005906	RBM38	100	98.261	ENSCPOG00000012781	RBM38	96	98.261	Cavia_porcellus
ENSCLAG00000005906	RBM38	100	95.217	ENSCCAG00000036872	RBM38	93	100.000	Cebus_capucinus
ENSCLAG00000005906	RBM38	100	95.652	ENSCATG00000032133	RBM38	93	100.000	Cercocebus_atys
ENSCLAG00000005906	RBM38	100	95.652	ENSCSAG00000015503	RBM38	96	95.652	Chlorocebus_sabaeus
ENSCLAG00000005906	RBM38	94	80.734	ENSCPBG00000024059	RBM38	100	80.734	Chrysemys_picta_bellii
ENSCLAG00000005906	RBM38	100	72.609	ENSCANG00000030105	-	86	72.609	Colobus_angolensis_palliatus
ENSCLAG00000005906	RBM38	98	93.363	ENSCGRG00001012928	Rbm38	95	93.363	Cricetulus_griseus_chok1gshd
ENSCLAG00000005906	RBM38	64	68.667	ENSCSEG00000020943	rbm38	60	61.413	Cynoglossus_semilaevis
ENSCLAG00000005906	RBM38	92	69.863	ENSCSEG00000004701	-	93	70.909	Cynoglossus_semilaevis
ENSCLAG00000005906	RBM38	92	59.657	ENSCVAG00000015952	rbm38	91	60.515	Cyprinodon_variegatus
ENSCLAG00000005906	RBM38	78	78.022	ENSCVAG00000005472	-	78	75.377	Cyprinodon_variegatus
ENSCLAG00000005906	RBM38	92	64.126	ENSDARG00000058818	rbm38	92	64.126	Danio_rerio
ENSCLAG00000005906	RBM38	94	87.037	ENSDNOG00000032004	RBM38	100	87.037	Dasypus_novemcinctus
ENSCLAG00000005906	RBM38	63	67.808	ENSEBUG00000015164	rbm38	88	67.808	Eptatretus_burgeri
ENSCLAG00000005906	RBM38	100	93.043	ENSECAG00000007700	RBM38	96	93.043	Equus_caballus
ENSCLAG00000005906	RBM38	100	91.775	ENSEEUG00000013489	RBM38	96	93.074	Erinaceus_europaeus
ENSCLAG00000005906	RBM38	94	65.401	ENSELUG00000005849	-	95	65.401	Esox_lucius
ENSCLAG00000005906	RBM38	87	65.672	ENSELUG00000000585	-	87	65.672	Esox_lucius
ENSCLAG00000005906	RBM38	100	95.217	ENSFCAG00000042916	RBM38	96	95.217	Felis_catus
ENSCLAG00000005906	RBM38	77	84.831	ENSFALG00000010805	RBM38	93	84.916	Ficedula_albicollis
ENSCLAG00000005906	RBM38	92	70.833	ENSFHEG00000006160	-	92	70.833	Fundulus_heteroclitus
ENSCLAG00000005906	RBM38	92	57.511	ENSFHEG00000017748	rbm38	91	57.511	Fundulus_heteroclitus
ENSCLAG00000005906	RBM38	78	70.718	ENSGMOG00000016655	-	96	73.626	Gadus_morhua
ENSCLAG00000005906	RBM38	94	78.440	ENSGALG00000026081	RBM38	100	78.440	Gallus_gallus
ENSCLAG00000005906	RBM38	93	66.518	ENSGACG00000009873	-	100	66.667	Gasterosteus_aculeatus
ENSCLAG00000005906	RBM38	92	62.736	ENSGACG00000015224	rbm38	98	62.736	Gasterosteus_aculeatus
ENSCLAG00000005906	RBM38	94	81.193	ENSGAGG00000001187	RBM38	100	81.193	Gopherus_agassizii
ENSCLAG00000005906	RBM38	99	59.833	ENSHBUG00000012058	rbm38	98	59.833	Haplochromis_burtoni
ENSCLAG00000005906	RBM38	92	69.725	ENSHBUG00000011778	-	92	70.320	Haplochromis_burtoni
ENSCLAG00000005906	RBM38	100	94.348	ENSHGLG00000015077	RBM38	96	94.348	Heterocephalus_glaber_female
ENSCLAG00000005906	RBM38	73	63.905	ENSHCOG00000019040	rbm38	71	63.905	Hippocampus_comes
ENSCLAG00000005906	RBM38	82	71.875	ENSHCOG00000005622	-	54	73.438	Hippocampus_comes
ENSCLAG00000005906	RBM38	94	66.379	ENSIPUG00000019349	-	95	66.379	Ictalurus_punctatus
ENSCLAG00000005906	RBM38	92	53.814	ENSKMAG00000012402	rbm38	98	54.237	Kryptolebias_marmoratus
ENSCLAG00000005906	RBM38	92	58.798	ENSLBEG00000018878	rbm38	91	58.798	Labrus_bergylta
ENSCLAG00000005906	RBM38	92	67.890	ENSLBEG00000016163	RBM38	92	68.950	Labrus_bergylta
ENSCLAG00000005906	RBM38	94	71.111	ENSLOCG00000003456	rbm38	95	71.111	Lepisosteus_oculatus
ENSCLAG00000005906	RBM38	100	95.652	ENSMFAG00000043808	RBM38	93	100.000	Macaca_fascicularis
ENSCLAG00000005906	RBM38	100	95.652	ENSMMUG00000031391	RBM38	93	100.000	Macaca_mulatta
ENSCLAG00000005906	RBM38	100	95.652	ENSMNEG00000034683	RBM38	93	100.000	Macaca_nemestrina
ENSCLAG00000005906	RBM38	94	58.403	ENSMAMG00000024135	rbm38	93	58.403	Mastacembelus_armatus
ENSCLAG00000005906	RBM38	94	63.559	ENSMAMG00000020499	RBM38	95	65.401	Mastacembelus_armatus
ENSCLAG00000005906	RBM38	92	69.725	ENSMZEG00005000849	-	92	70.320	Maylandia_zebra
ENSCLAG00000005906	RBM38	94	57.563	ENSMZEG00005026036	rbm38	93	57.563	Maylandia_zebra
ENSCLAG00000005906	RBM38	98	93.805	ENSMAUG00000021211	Rbm38	95	93.805	Mesocricetus_auratus
ENSCLAG00000005906	RBM38	94	96.296	ENSMICG00000038011	RBM38	100	96.296	Microcebus_murinus
ENSCLAG00000005906	RBM38	98	93.805	ENSMOCG00000008715	Rbm38	95	93.805	Microtus_ochrogaster
ENSCLAG00000005906	RBM38	98	67.532	ENSMMOG00000020051	-	97	68.103	Mola_mola
ENSCLAG00000005906	RBM38	97	79.646	ENSMODG00000016458	RBM38	94	79.646	Monodelphis_domestica
ENSCLAG00000005906	RBM38	67	70.513	ENSMALG00000022327	rbm38	67	70.513	Monopterus_albus
ENSCLAG00000005906	RBM38	80	74.074	ENSMALG00000004680	RBM38	70	74.074	Monopterus_albus
ENSCLAG00000005906	RBM38	98	94.690	MGP_CAROLIEiJ_G0024745	Rbm38	95	94.690	Mus_caroli
ENSCLAG00000005906	RBM38	98	95.133	ENSMUSG00000027510	Rbm38	95	95.133	Mus_musculus
ENSCLAG00000005906	RBM38	99	93.421	MGP_PahariEiJ_G0026186	Rbm38	96	93.421	Mus_pahari
ENSCLAG00000005906	RBM38	98	94.690	MGP_SPRETEiJ_G0025665	Rbm38	95	94.690	Mus_spretus
ENSCLAG00000005906	RBM38	80	96.757	ENSMPUG00000006518	RBM38	93	96.791	Mustela_putorius_furo
ENSCLAG00000005906	RBM38	94	90.278	ENSMLUG00000011140	RBM38	100	90.278	Myotis_lucifugus
ENSCLAG00000005906	RBM38	100	59.504	ENSNBRG00000022685	rbm38	99	59.504	Neolamprologus_brichardi
ENSCLAG00000005906	RBM38	92	65.948	ENSNBRG00000022545	-	92	66.524	Neolamprologus_brichardi
ENSCLAG00000005906	RBM38	56	80.469	ENSMEUG00000005475	-	92	80.469	Notamacropus_eugenii
ENSCLAG00000005906	RBM38	100	98.261	ENSODEG00000007980	RBM38	96	98.261	Octodon_degus
ENSCLAG00000005906	RBM38	92	65.801	ENSONIG00000020324	-	92	66.379	Oreochromis_niloticus
ENSCLAG00000005906	RBM38	93	57.806	ENSONIG00000017073	rbm38	95	57.806	Oreochromis_niloticus
ENSCLAG00000005906	RBM38	99	77.632	ENSOANG00000009259	RBM38	87	78.509	Ornithorhynchus_anatinus
ENSCLAG00000005906	RBM38	92	56.410	ENSORLG00000012154	rbm38	93	55.230	Oryzias_latipes
ENSCLAG00000005906	RBM38	92	63.090	ENSORLG00000027180	-	92	65.236	Oryzias_latipes
ENSCLAG00000005906	RBM38	94	56.067	ENSORLG00020017871	rbm38	93	56.067	Oryzias_latipes_hni
ENSCLAG00000005906	RBM38	95	60.887	ENSORLG00020020751	-	95	62.903	Oryzias_latipes_hni
ENSCLAG00000005906	RBM38	99	58.009	ENSORLG00015012606	rbm38	96	57.759	Oryzias_latipes_hsok
ENSCLAG00000005906	RBM38	92	63.362	ENSORLG00015017040	-	92	66.094	Oryzias_latipes_hsok
ENSCLAG00000005906	RBM38	94	56.067	ENSOMEG00000006805	rbm38	93	56.067	Oryzias_melastigma
ENSCLAG00000005906	RBM38	92	63.203	ENSOMEG00000023912	-	92	64.069	Oryzias_melastigma
ENSCLAG00000005906	RBM38	100	95.671	ENSOGAG00000029136	RBM38	96	95.671	Otolemur_garnettii
ENSCLAG00000005906	RBM38	100	95.217	ENSPPRG00000009507	RBM38	96	95.217	Panthera_pardus
ENSCLAG00000005906	RBM38	90	93.269	ENSPTRG00000013661	RBM38	100	93.269	Pan_troglodytes
ENSCLAG00000005906	RBM38	54	99.194	ENSPTRG00000045845	-	68	99.194	Pan_troglodytes
ENSCLAG00000005906	RBM38	100	95.652	ENSPANG00000020919	-	93	100.000	Papio_anubis
ENSCLAG00000005906	RBM38	100	74.783	ENSPANG00000033127	-	96	74.783	Papio_anubis
ENSCLAG00000005906	RBM38	97	63.934	ENSPKIG00000025417	rbm38	98	63.934	Paramormyrops_kingsleyae
ENSCLAG00000005906	RBM38	95	67.699	ENSPKIG00000018122	-	100	88.889	Paramormyrops_kingsleyae
ENSCLAG00000005906	RBM38	97	79.911	ENSPSIG00000011649	RBM38	95	79.911	Pelodiscus_sinensis
ENSCLAG00000005906	RBM38	94	56.723	ENSPMGG00000011343	rbm38	94	57.983	Periophthalmus_magnuspinnatus
ENSCLAG00000005906	RBM38	92	60.515	ENSPMGG00000017094	-	92	63.519	Periophthalmus_magnuspinnatus
ENSCLAG00000005906	RBM38	97	79.646	ENSPCIG00000013648	RBM38	94	79.646	Phascolarctos_cinereus
ENSCLAG00000005906	RBM38	78	64.674	ENSPFOG00000011658	rbm38	91	58.974	Poecilia_formosa
ENSCLAG00000005906	RBM38	78	65.761	ENSPLAG00000005218	rbm38	91	58.974	Poecilia_latipinna
ENSCLAG00000005906	RBM38	78	77.297	ENSPLAG00000002500	-	92	66.949	Poecilia_latipinna
ENSCLAG00000005906	RBM38	78	64.674	ENSPMEG00000015770	rbm38	91	58.974	Poecilia_mexicana
ENSCLAG00000005906	RBM38	78	65.217	ENSPREG00000007398	rbm38	91	59.402	Poecilia_reticulata
ENSCLAG00000005906	RBM38	100	95.671	ENSPCOG00000026201	RBM38	93	99.115	Propithecus_coquereli
ENSCLAG00000005906	RBM38	100	65.217	ENSPVAG00000006457	RBM38	96	65.217	Pteropus_vampyrus
ENSCLAG00000005906	RBM38	92	69.725	ENSPNYG00000019727	-	100	88.889	Pundamilia_nyererei
ENSCLAG00000005906	RBM38	99	59.072	ENSPNYG00000021373	rbm38	98	59.833	Pundamilia_nyererei
ENSCLAG00000005906	RBM38	93	63.839	ENSPNAG00000010596	rbm38	93	63.839	Pygocentrus_nattereri
ENSCLAG00000005906	RBM38	94	66.957	ENSPNAG00000015123	-	96	78.030	Pygocentrus_nattereri
ENSCLAG00000005906	RBM38	98	94.690	ENSRNOG00000006420	Rbm38	95	94.690	Rattus_norvegicus
ENSCLAG00000005906	RBM38	100	77.826	ENSRROG00000036388	-	96	77.826	Rhinopithecus_roxellana
ENSCLAG00000005906	RBM38	94	94.444	ENSSBOG00000031053	RBM38	100	100.000	Saimiri_boliviensis_boliviensis
ENSCLAG00000005906	RBM38	92	66.364	ENSSFOG00015004453	rbm38	92	69.545	Scleropages_formosus
ENSCLAG00000005906	RBM38	92	64.807	ENSSDUG00000021082	RBM38	92	65.236	Seriola_dumerili
ENSCLAG00000005906	RBM38	92	60.086	ENSSDUG00000022611	rbm38	91	60.086	Seriola_dumerili
ENSCLAG00000005906	RBM38	92	65.665	ENSSLDG00000011778	RBM38	92	66.094	Seriola_lalandi_dorsalis
ENSCLAG00000005906	RBM38	92	63.426	ENSSLDG00000010845	rbm38	90	63.426	Seriola_lalandi_dorsalis
ENSCLAG00000005906	RBM38	92	67.136	ENSSPAG00000020989	RBM38	91	69.302	Stegastes_partitus
ENSCLAG00000005906	RBM38	94	58.824	ENSSPAG00000011113	rbm38	93	58.824	Stegastes_partitus
ENSCLAG00000005906	RBM38	100	95.652	ENSSSCG00000007504	RBM38	96	95.652	Sus_scrofa
ENSCLAG00000005906	RBM38	92	57.205	ENSTRUG00000024954	rbm38	91	56.769	Takifugu_rubripes
ENSCLAG00000005906	RBM38	92	65.948	ENSTRUG00000019869	-	92	67.382	Takifugu_rubripes
ENSCLAG00000005906	RBM38	92	68.778	ENSTNIG00000007093	-	97	69.820	Tetraodon_nigroviridis
ENSCLAG00000005906	RBM38	100	95.652	ENSUAMG00000019780	RBM38	96	95.652	Ursus_americanus
ENSCLAG00000005906	RBM38	100	95.217	ENSVVUG00000017246	RBM38	96	95.217	Vulpes_vulpes
ENSCLAG00000005906	RBM38	95	72.889	ENSXETG00000011268	rbm38	100	73.778	Xenopus_tropicalis
ENSCLAG00000005906	RBM38	78	67.760	ENSXMAG00000023662	rbm38	91	59.227	Xiphophorus_maculatus