EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCLAG00000006508 (Gene tree)
Gene ID: 102020308
Gene Symbol: SF3A1
Alias: PRPF21|Prp21|SAP114|SF3a120
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Minus strand
Length: 24813 bases
Position: chrJH721915.1:4577329-4602141
Accession: 102020308
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000009370	PRP21_like_P	PF12230.8	7.6e-52	1	1
ENSCLAP00000009370	Surp	PF01805.20	6e-46	1	2
ENSCLAP00000009370	Surp	PF01805.20	6e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000009499	SF3A1-201	4921	XM_005396258	ENSCLAP00000009370	793 (aa)	XP_005396315	UPI00038EF672

Gene Model

Click here to download ENSCLAG00000006508's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000006508's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000006508	SF3A1	100	98.739	ENSG00000099995	SF3A1	100	98.739	Homo_sapiens
ENSCLAG00000006508	SF3A1	100	83.000	ENSAPOG00000020465	sf3a1	99	85.419	Acanthochromis_polyacanthus
ENSCLAG00000006508	SF3A1	100	97.862	ENSAMEG00000007737	SF3A1	100	97.862	Ailuropoda_melanoleuca
ENSCLAG00000006508	SF3A1	100	84.277	ENSACIG00000020672	sf3a1	98	85.807	Amphilophus_citrinellus
ENSCLAG00000006508	SF3A1	100	82.875	ENSAOCG00000003060	sf3a1	97	86.013	Amphiprion_ocellaris
ENSCLAG00000006508	SF3A1	100	83.000	ENSAPEG00000010735	sf3a1	97	86.144	Amphiprion_percula
ENSCLAG00000006508	SF3A1	96	85.807	ENSATEG00000021201	sf3a1	97	85.938	Anabas_testudineus
ENSCLAG00000006508	SF3A1	95	93.659	ENSAPLG00000009057	SF3A1	99	93.135	Anas_platyrhynchos
ENSCLAG00000006508	SF3A1	100	85.961	ENSACAG00000009415	SF3A1	100	87.192	Anolis_carolinensis
ENSCLAG00000006508	SF3A1	100	98.235	ENSANAG00000032045	SF3A1	100	98.235	Aotus_nancymaae
ENSCLAG00000006508	SF3A1	100	84.257	ENSACLG00000012622	sf3a1	98	86.050	Astatotilapia_calliptera
ENSCLAG00000006508	SF3A1	99	83.312	ENSAMXG00000005382	sf3a1	99	84.467	Astyanax_mexicanus
ENSCLAG00000006508	SF3A1	100	98.613	ENSBTAG00000003390	SF3A1	100	98.613	Bos_taurus
ENSCLAG00000006508	SF3A1	84	43.088	WBGene00004188	prp-21	94	43.141	Caenorhabditis_elegans
ENSCLAG00000006508	SF3A1	100	98.361	ENSCJAG00000010370	SF3A1	100	98.361	Callithrix_jacchus
ENSCLAG00000006508	SF3A1	100	98.235	ENSCAFG00000012559	SF3A1	100	98.235	Canis_familiaris
ENSCLAG00000006508	SF3A1	100	98.235	ENSCAFG00020000838	SF3A1	100	98.235	Canis_lupus_dingo
ENSCLAG00000006508	SF3A1	100	98.487	ENSCHIG00000018642	SF3A1	100	98.487	Capra_hircus
ENSCLAG00000006508	SF3A1	100	98.739	ENSTSYG00000004739	SF3A1	100	98.739	Carlito_syrichta
ENSCLAG00000006508	SF3A1	95	81.275	ENSCAPG00000015414	SF3A1	99	81.275	Cavia_aperea
ENSCLAG00000006508	SF3A1	100	98.991	ENSCPOG00000014589	SF3A1	100	98.991	Cavia_porcellus
ENSCLAG00000006508	SF3A1	100	98.235	ENSCCAG00000032006	SF3A1	100	98.235	Cebus_capucinus
ENSCLAG00000006508	SF3A1	100	98.739	ENSCATG00000029241	SF3A1	100	98.739	Cercocebus_atys
ENSCLAG00000006508	SF3A1	100	98.613	ENSCSAG00000009470	SF3A1	100	98.613	Chlorocebus_sabaeus
ENSCLAG00000006508	SF3A1	61	98.165	ENSCHOG00000005201	SF3A1	69	98.165	Choloepus_hoffmanni
ENSCLAG00000006508	SF3A1	100	90.932	ENSCPBG00000007595	SF3A1	100	91.058	Chrysemys_picta_bellii
ENSCLAG00000006508	SF3A1	94	52.381	ENSCING00000008526	-	66	58.238	Ciona_intestinalis
ENSCLAG00000006508	SF3A1	96	51.484	ENSCSAVG00000005608	-	91	64.286	Ciona_savignyi
ENSCLAG00000006508	SF3A1	100	98.613	ENSCANG00000033564	SF3A1	100	98.613	Colobus_angolensis_palliatus
ENSCLAG00000006508	SF3A1	100	98.108	ENSCGRG00001008933	Sf3a1	100	98.108	Cricetulus_griseus_chok1gshd
ENSCLAG00000006508	SF3A1	100	98.108	ENSCGRG00000006127	Sf3a1	100	98.108	Cricetulus_griseus_crigri
ENSCLAG00000006508	SF3A1	99	81.980	ENSCSEG00000010792	sf3a1	99	83.012	Cynoglossus_semilaevis
ENSCLAG00000006508	SF3A1	100	83.019	ENSCVAG00000004560	sf3a1	98	84.115	Cyprinodon_variegatus
ENSCLAG00000006508	SF3A1	100	82.538	ENSDARG00000041887	sf3a1	98	84.585	Danio_rerio
ENSCLAG00000006508	SF3A1	100	97.987	ENSDNOG00000010629	SF3A1	100	97.987	Dasypus_novemcinctus
ENSCLAG00000006508	SF3A1	100	98.739	ENSDORG00000005613	Sf3a1	100	98.739	Dipodomys_ordii
ENSCLAG00000006508	SF3A1	79	62.030	FBgn0266917	Sf3a1	84	60.289	Drosophila_melanogaster
ENSCLAG00000006508	SF3A1	84	96.707	ENSETEG00000017194	SF3A1	100	94.444	Echinops_telfairi
ENSCLAG00000006508	SF3A1	100	65.059	ENSEBUG00000001285	sf3a1	96	67.079	Eptatretus_burgeri
ENSCLAG00000006508	SF3A1	100	98.865	ENSEASG00005010254	SF3A1	100	98.865	Equus_asinus_asinus
ENSCLAG00000006508	SF3A1	100	98.865	ENSECAG00000023962	SF3A1	100	98.865	Equus_caballus
ENSCLAG00000006508	SF3A1	73	95.082	ENSEEUG00000003159	SF3A1	82	95.082	Erinaceus_europaeus
ENSCLAG00000006508	SF3A1	100	82.206	ENSELUG00000022578	sf3a1	97	83.333	Esox_lucius
ENSCLAG00000006508	SF3A1	100	98.361	ENSFCAG00000011932	SF3A1	100	98.361	Felis_catus
ENSCLAG00000006508	SF3A1	95	92.725	ENSFALG00000006944	SF3A1	100	91.436	Ficedula_albicollis
ENSCLAG00000006508	SF3A1	100	99.117	ENSFDAG00000009560	SF3A1	100	99.117	Fukomys_damarensis
ENSCLAG00000006508	SF3A1	100	84.151	ENSFHEG00000010866	sf3a1	98	85.417	Fundulus_heteroclitus
ENSCLAG00000006508	SF3A1	100	81.108	ENSGMOG00000016024	sf3a1	97	81.064	Gadus_morhua
ENSCLAG00000006508	SF3A1	95	93.651	ENSGALG00000007937	SF3A1	100	91.940	Gallus_gallus
ENSCLAG00000006508	SF3A1	100	83.459	ENSGAFG00000009111	sf3a1	97	84.706	Gambusia_affinis
ENSCLAG00000006508	SF3A1	100	82.331	ENSGACG00000011893	sf3a1	97	83.053	Gasterosteus_aculeatus
ENSCLAG00000006508	SF3A1	96	91.064	ENSGAGG00000000762	SF3A1	99	91.196	Gopherus_agassizii
ENSCLAG00000006508	SF3A1	100	98.739	ENSGGOG00000012631	SF3A1	100	98.739	Gorilla_gorilla
ENSCLAG00000006508	SF3A1	100	84.257	ENSHBUG00000015795	sf3a1	98	86.050	Haplochromis_burtoni
ENSCLAG00000006508	SF3A1	100	98.991	ENSHGLG00000007907	SF3A1	100	98.991	Heterocephalus_glaber_female
ENSCLAG00000006508	SF3A1	100	98.991	ENSHGLG00100013799	SF3A1	100	98.991	Heterocephalus_glaber_male
ENSCLAG00000006508	SF3A1	100	80.126	ENSHCOG00000015423	sf3a1	99	80.516	Hippocampus_comes
ENSCLAG00000006508	SF3A1	96	82.552	ENSIPUG00000002470	sf3a1	98	82.812	Ictalurus_punctatus
ENSCLAG00000006508	SF3A1	100	98.613	ENSSTOG00000013892	SF3A1	100	98.613	Ictidomys_tridecemlineatus
ENSCLAG00000006508	SF3A1	100	98.615	ENSJJAG00000022566	Sf3a1	100	98.615	Jaculus_jaculus
ENSCLAG00000006508	SF3A1	100	82.767	ENSKMAG00000002400	sf3a1	98	84.766	Kryptolebias_marmoratus
ENSCLAG00000006508	SF3A1	100	82.516	ENSLBEG00000022974	sf3a1	97	84.052	Labrus_bergylta
ENSCLAG00000006508	SF3A1	100	86.826	ENSLACG00000003565	SF3A1	97	88.151	Latimeria_chalumnae
ENSCLAG00000006508	SF3A1	100	85.088	ENSLOCG00000008251	sf3a1	97	86.883	Lepisosteus_oculatus
ENSCLAG00000006508	SF3A1	100	97.982	ENSLAFG00000000448	SF3A1	100	97.982	Loxodonta_africana
ENSCLAG00000006508	SF3A1	98	62.293	ENSLAFG00000026032	-	97	62.211	Loxodonta_africana
ENSCLAG00000006508	SF3A1	100	98.487	ENSMFAG00000031979	SF3A1	100	98.487	Macaca_fascicularis
ENSCLAG00000006508	SF3A1	100	98.487	ENSMMUG00000005547	SF3A1	100	98.487	Macaca_mulatta
ENSCLAG00000006508	SF3A1	100	98.361	ENSMNEG00000037229	SF3A1	100	98.361	Macaca_nemestrina
ENSCLAG00000006508	SF3A1	100	98.613	ENSMLEG00000041908	SF3A1	100	98.613	Mandrillus_leucophaeus
ENSCLAG00000006508	SF3A1	97	85.640	ENSMAMG00000006460	sf3a1	96	86.328	Mastacembelus_armatus
ENSCLAG00000006508	SF3A1	100	84.257	ENSMZEG00005009633	sf3a1	98	86.050	Maylandia_zebra
ENSCLAG00000006508	SF3A1	95	93.651	ENSMGAG00000001330	SF3A1	99	93.126	Meleagris_gallopavo
ENSCLAG00000006508	SF3A1	92	94.536	ENSMAUG00000020317	Sf3a1	94	94.536	Mesocricetus_auratus
ENSCLAG00000006508	SF3A1	100	98.235	ENSMICG00000010038	SF3A1	100	98.235	Microcebus_murinus
ENSCLAG00000006508	SF3A1	100	97.982	ENSMOCG00000008438	Sf3a1	100	97.982	Microtus_ochrogaster
ENSCLAG00000006508	SF3A1	100	81.407	ENSMMOG00000015588	sf3a1	98	82.620	Mola_mola
ENSCLAG00000006508	SF3A1	100	97.352	ENSMODG00000009270	SF3A1	100	97.352	Monodelphis_domestica
ENSCLAG00000006508	SF3A1	100	84.509	ENSMALG00000000148	sf3a1	99	86.104	Monopterus_albus
ENSCLAG00000006508	SF3A1	100	97.856	MGP_CAROLIEiJ_G0016029	Sf3a1	100	97.856	Mus_caroli
ENSCLAG00000006508	SF3A1	100	97.856	ENSMUSG00000002129	Sf3a1	100	97.856	Mus_musculus
ENSCLAG00000006508	SF3A1	100	97.604	MGP_PahariEiJ_G0016862	Sf3a1	100	97.604	Mus_pahari
ENSCLAG00000006508	SF3A1	100	97.856	MGP_SPRETEiJ_G0016870	Sf3a1	100	97.856	Mus_spretus
ENSCLAG00000006508	SF3A1	100	98.235	ENSMPUG00000013144	SF3A1	100	98.235	Mustela_putorius_furo
ENSCLAG00000006508	SF3A1	100	98.487	ENSMLUG00000002139	SF3A1	100	98.487	Myotis_lucifugus
ENSCLAG00000006508	SF3A1	100	98.739	ENSNGAG00000016977	Sf3a1	100	98.739	Nannospalax_galili
ENSCLAG00000006508	SF3A1	100	84.257	ENSNBRG00000016642	sf3a1	96	86.693	Neolamprologus_brichardi
ENSCLAG00000006508	SF3A1	100	98.613	ENSNLEG00000003686	SF3A1	100	98.613	Nomascus_leucogenys
ENSCLAG00000006508	SF3A1	96	87.763	ENSMEUG00000008741	SF3A1	100	87.763	Notamacropus_eugenii
ENSCLAG00000006508	SF3A1	100	97.982	ENSOPRG00000016636	SF3A1	100	97.982	Ochotona_princeps
ENSCLAG00000006508	SF3A1	100	98.991	ENSODEG00000002571	SF3A1	100	98.991	Octodon_degus
ENSCLAG00000006508	SF3A1	100	84.277	ENSONIG00000010848	sf3a1	98	85.417	Oreochromis_niloticus
ENSCLAG00000006508	SF3A1	100	98.361	ENSOCUG00000007633	SF3A1	100	98.361	Oryctolagus_cuniculus
ENSCLAG00000006508	SF3A1	96	81.617	ENSORLG00000013050	sf3a1	98	83.962	Oryzias_latipes
ENSCLAG00000006508	SF3A1	96	82.399	ENSORLG00020003236	sf3a1	94	84.097	Oryzias_latipes_hni
ENSCLAG00000006508	SF3A1	100	82.516	ENSORLG00015017411	sf3a1	99	84.000	Oryzias_latipes_hsok
ENSCLAG00000006508	SF3A1	100	82.516	ENSOMEG00000013362	sf3a1	99	84.000	Oryzias_melastigma
ENSCLAG00000006508	SF3A1	100	98.613	ENSOGAG00000012931	SF3A1	100	98.613	Otolemur_garnettii
ENSCLAG00000006508	SF3A1	100	96.721	ENSOARG00000006849	SF3A1	100	96.721	Ovis_aries
ENSCLAG00000006508	SF3A1	100	97.730	ENSPPAG00000041790	SF3A1	100	97.730	Pan_paniscus
ENSCLAG00000006508	SF3A1	100	98.361	ENSPPRG00000004391	SF3A1	100	98.361	Panthera_pardus
ENSCLAG00000006508	SF3A1	97	98.446	ENSPTIG00000000844	SF3A1	100	98.446	Panthera_tigris_altaica
ENSCLAG00000006508	SF3A1	100	98.739	ENSPTRG00000014240	SF3A1	100	98.739	Pan_troglodytes
ENSCLAG00000006508	SF3A1	100	98.613	ENSPANG00000020772	SF3A1	100	98.613	Papio_anubis
ENSCLAG00000006508	SF3A1	83	94.505	ENSPSIG00000012803	SF3A1	96	94.505	Pelodiscus_sinensis
ENSCLAG00000006508	SF3A1	96	84.293	ENSPMGG00000023096	sf3a1	100	84.031	Periophthalmus_magnuspinnatus
ENSCLAG00000006508	SF3A1	100	98.108	ENSPEMG00000009494	Sf3a1	100	98.108	Peromyscus_maniculatus_bairdii
ENSCLAG00000006508	SF3A1	69	77.858	ENSPMAG00000007139	-	90	79.511	Petromyzon_marinus
ENSCLAG00000006508	SF3A1	100	97.100	ENSPCIG00000022692	SF3A1	100	97.100	Phascolarctos_cinereus
ENSCLAG00000006508	SF3A1	100	75.000	ENSPFOG00000016768	sf3a1	93	78.776	Poecilia_formosa
ENSCLAG00000006508	SF3A1	100	83.899	ENSPLAG00000017268	sf3a1	97	84.496	Poecilia_latipinna
ENSCLAG00000006508	SF3A1	84	85.843	ENSPMEG00000019811	sf3a1	98	85.090	Poecilia_mexicana
ENSCLAG00000006508	SF3A1	100	84.025	ENSPREG00000010347	sf3a1	97	84.884	Poecilia_reticulata
ENSCLAG00000006508	SF3A1	100	98.613	ENSPPYG00000011707	SF3A1	100	98.613	Pongo_abelii
ENSCLAG00000006508	SF3A1	57	98.585	ENSPCAG00000003266	SF3A1	57	98.585	Procavia_capensis
ENSCLAG00000006508	SF3A1	100	98.235	ENSPCOG00000026630	SF3A1	100	98.235	Propithecus_coquereli
ENSCLAG00000006508	SF3A1	100	94.199	ENSPVAG00000017719	SF3A1	94	97.718	Pteropus_vampyrus
ENSCLAG00000006508	SF3A1	100	84.257	ENSPNYG00000018706	sf3a1	98	86.050	Pundamilia_nyererei
ENSCLAG00000006508	SF3A1	96	84.655	ENSPNAG00000003721	sf3a1	98	85.306	Pygocentrus_nattereri
ENSCLAG00000006508	SF3A1	100	98.108	ENSRNOG00000005218	Sf3a1	100	98.108	Rattus_norvegicus
ENSCLAG00000006508	SF3A1	100	98.739	ENSRBIG00000032167	SF3A1	100	98.739	Rhinopithecus_bieti
ENSCLAG00000006508	SF3A1	100	98.739	ENSRROG00000044908	SF3A1	100	98.739	Rhinopithecus_roxellana
ENSCLAG00000006508	SF3A1	92	98.363	ENSSBOG00000021960	SF3A1	100	98.523	Saimiri_boliviensis_boliviensis
ENSCLAG00000006508	SF3A1	97	94.955	ENSSHAG00000003666	SF3A1	98	95.084	Sarcophilus_harrisii
ENSCLAG00000006508	SF3A1	100	83.605	ENSSFOG00015004579	sf3a1	98	85.237	Scleropages_formosus
ENSCLAG00000006508	SF3A1	100	81.887	ENSSMAG00000004275	sf3a1	98	82.817	Scophthalmus_maximus
ENSCLAG00000006508	SF3A1	100	83.774	ENSSDUG00000022219	sf3a1	97	85.621	Seriola_dumerili
ENSCLAG00000006508	SF3A1	100	83.774	ENSSLDG00000012642	sf3a1	97	85.621	Seriola_lalandi_dorsalis
ENSCLAG00000006508	SF3A1	97	95.207	ENSSARG00000005960	SF3A1	100	95.207	Sorex_araneus
ENSCLAG00000006508	SF3A1	96	91.969	ENSSPUG00000018863	SF3A1	100	91.542	Sphenodon_punctatus
ENSCLAG00000006508	SF3A1	100	84.250	ENSSPAG00000011856	sf3a1	99	85.419	Stegastes_partitus
ENSCLAG00000006508	SF3A1	100	98.361	ENSSSCG00000010002	SF3A1	100	98.361	Sus_scrofa
ENSCLAG00000006508	SF3A1	95	93.536	ENSTGUG00000010547	SF3A1	99	93.144	Taeniopygia_guttata
ENSCLAG00000006508	SF3A1	100	81.509	ENSTRUG00000006118	sf3a1	97	82.092	Takifugu_rubripes
ENSCLAG00000006508	SF3A1	64	81.041	ENSTNIG00000005713	sf3a1	89	86.607	Tetraodon_nigroviridis
ENSCLAG00000006508	SF3A1	100	91.047	ENSTBEG00000012771	SF3A1	100	91.047	Tupaia_belangeri
ENSCLAG00000006508	SF3A1	100	98.237	ENSTTRG00000001535	SF3A1	100	98.237	Tursiops_truncatus
ENSCLAG00000006508	SF3A1	99	97.205	ENSUAMG00000006750	SF3A1	99	97.205	Ursus_americanus
ENSCLAG00000006508	SF3A1	99	97.321	ENSUMAG00000016665	SF3A1	99	97.321	Ursus_maritimus
ENSCLAG00000006508	SF3A1	100	98.235	ENSVVUG00000003075	SF3A1	100	98.235	Vulpes_vulpes
ENSCLAG00000006508	SF3A1	100	85.696	ENSXETG00000016144	sf3a1	100	85.320	Xenopus_tropicalis
ENSCLAG00000006508	SF3A1	100	83.333	ENSXCOG00000015653	sf3a1	97	83.979	Xiphophorus_couchianus
ENSCLAG00000006508	SF3A1	100	83.459	ENSXMAG00000002753	sf3a1	97	84.109	Xiphophorus_maculatus