EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCLAG00000006748 (Gene tree)
Gene ID: 102008849
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Plus strand
Length: 237958 bases
Position: chrJH721941.1:940041-1177998
Accession: 102008849
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000009738	EST1	PF10374.9	1.6e-14	1	1
ENSCLAP00000009737	EST1	PF10374.9	1.7e-14	1	1
ENSCLAP00000009738	EST1_DNA_bind	PF10373.9	2e-60	1	1
ENSCLAP00000009737	EST1_DNA_bind	PF10373.9	2.1e-60	1	1
ENSCLAP00000009739	EST1_DNA_bind	PF10373.9	5e-10	1	1
ENSCLAP00000009738	PIN_4	PF13638.6	3.4e-21	1	1
ENSCLAP00000009737	PIN_4	PF13638.6	3.5e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000009868	SMG6-203	714	-	ENSCLAP00000009739	238 (aa)	-	-
ENSCLAT00000009867	SMG6-202	4536	XM_005402585	ENSCLAP00000009738	1388 (aa)	XP_005402642	UPI00038EEC04
ENSCLAT00000009866	SMG6-201	6068	XM_005402587	ENSCLAP00000009737	1419 (aa)	XP_005402644	UPI00038ED741

Gene Model

Click here to download ENSCLAG00000006748's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000006748's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000006748	SMG6	100	91.896	ENSG00000070366	SMG6	100	98.374	Homo_sapiens
ENSCLAG00000006748	SMG6	91	56.332	ENSAPOG00000019448	smg6	74	54.638	Acanthochromis_polyacanthus
ENSCLAG00000006748	SMG6	100	92.459	ENSAMEG00000007632	SMG6	100	92.459	Ailuropoda_melanoleuca
ENSCLAG00000006748	SMG6	91	58.333	ENSACIG00000012997	smg6	98	49.636	Amphilophus_citrinellus
ENSCLAG00000006748	SMG6	91	55.895	ENSAOCG00000002630	smg6	74	54.503	Amphiprion_ocellaris
ENSCLAG00000006748	SMG6	91	56.332	ENSAPEG00000019101	smg6	74	54.658	Amphiprion_percula
ENSCLAG00000006748	SMG6	84	60.377	ENSATEG00000006483	smg6	75	53.513	Anabas_testudineus
ENSCLAG00000006748	SMG6	91	73.636	ENSACAG00000011783	SMG6	99	55.468	Anolis_carolinensis
ENSCLAG00000006748	SMG6	100	92.319	ENSANAG00000035760	SMG6	100	92.319	Aotus_nancymaae
ENSCLAG00000006748	SMG6	84	59.434	ENSACLG00000005288	smg6	82	54.214	Astatotilapia_calliptera
ENSCLAG00000006748	SMG6	90	56.828	ENSAMXG00000017326	smg6	99	49.620	Astyanax_mexicanus
ENSCLAG00000006748	SMG6	100	92.107	ENSBTAG00000000267	SMG6	100	92.107	Bos_taurus
ENSCLAG00000006748	SMG6	100	91.966	ENSCJAG00000001820	SMG6	100	91.966	Callithrix_jacchus
ENSCLAG00000006748	SMG6	100	92.107	ENSCAFG00000019260	SMG6	100	92.107	Canis_familiaris
ENSCLAG00000006748	SMG6	100	92.107	ENSCAFG00020009770	SMG6	100	92.107	Canis_lupus_dingo
ENSCLAG00000006748	SMG6	100	91.896	ENSCHIG00000021998	SMG6	100	91.896	Capra_hircus
ENSCLAG00000006748	SMG6	100	92.882	ENSTSYG00000003406	SMG6	100	97.456	Carlito_syrichta
ENSCLAG00000006748	SMG6	100	80.935	ENSCAPG00000016197	SMG6	99	87.033	Cavia_aperea
ENSCLAG00000006748	SMG6	100	95.141	ENSCPOG00000014878	SMG6	100	95.141	Cavia_porcellus
ENSCLAG00000006748	SMG6	100	92.178	ENSCCAG00000035801	SMG6	100	92.178	Cebus_capucinus
ENSCLAG00000006748	SMG6	100	92.107	ENSCATG00000031956	SMG6	100	92.107	Cercocebus_atys
ENSCLAG00000006748	SMG6	100	92.530	ENSCSAG00000013800	SMG6	100	92.530	Chlorocebus_sabaeus
ENSCLAG00000006748	SMG6	57	98.507	ENSCHOG00000005024	-	73	98.507	Choloepus_hoffmanni
ENSCLAG00000006748	SMG6	93	83.784	ENSCPBG00000020369	SMG6	100	72.765	Chrysemys_picta_bellii
ENSCLAG00000006748	SMG6	68	34.682	ENSCING00000010099	-	99	34.933	Ciona_intestinalis
ENSCLAG00000006748	SMG6	100	92.219	ENSCANG00000031764	SMG6	100	96.673	Colobus_angolensis_palliatus
ENSCLAG00000006748	SMG6	55	89.730	ENSCGRG00001019595	Smg6	97	89.730	Cricetulus_griseus_chok1gshd
ENSCLAG00000006748	SMG6	100	85.951	ENSCGRG00000007782	Smg6	100	86.095	Cricetulus_griseus_crigri
ENSCLAG00000006748	SMG6	99	52.177	ENSCSEG00000012757	smg6	90	52.171	Cynoglossus_semilaevis
ENSCLAG00000006748	SMG6	90	56.769	ENSCVAG00000012789	smg6	74	53.110	Cyprinodon_variegatus
ENSCLAG00000006748	SMG6	100	49.533	ENSDARG00000100481	smg6	100	50.402	Danio_rerio
ENSCLAG00000006748	SMG6	100	91.825	ENSDNOG00000048283	SMG6	100	91.825	Dasypus_novemcinctus
ENSCLAG00000006748	SMG6	95	96.476	ENSDORG00000016614	Smg6	94	98.198	Dipodomys_ordii
ENSCLAG00000006748	SMG6	93	97.619	ENSETEG00000016790	SMG6	93	97.619	Echinops_telfairi
ENSCLAG00000006748	SMG6	82	53.030	ENSEBUG00000005059	smg6	71	49.903	Eptatretus_burgeri
ENSCLAG00000006748	SMG6	99	93.203	ENSEASG00005009318	SMG6	99	93.155	Equus_asinus_asinus
ENSCLAG00000006748	SMG6	99	92.914	ENSECAG00000006519	SMG6	99	92.872	Equus_caballus
ENSCLAG00000006748	SMG6	100	80.973	ENSEEUG00000003493	SMG6	100	80.973	Erinaceus_europaeus
ENSCLAG00000006748	SMG6	84	62.857	ENSELUG00000005934	smg6	69	54.916	Esox_lucius
ENSCLAG00000006748	SMG6	100	93.446	ENSFCAG00000028817	SMG6	100	93.446	Felis_catus
ENSCLAG00000006748	SMG6	98	79.661	ENSFALG00000006538	SMG6	100	72.281	Ficedula_albicollis
ENSCLAG00000006748	SMG6	100	96.218	ENSFDAG00000015106	SMG6	100	96.218	Fukomys_damarensis
ENSCLAG00000006748	SMG6	84	56.872	ENSFHEG00000013282	smg6	75	52.791	Fundulus_heteroclitus
ENSCLAG00000006748	SMG6	83	56.938	ENSGMOG00000019077	smg6	68	67.757	Gadus_morhua
ENSCLAG00000006748	SMG6	98	80.085	ENSGALG00000003108	SMG6	98	71.903	Gallus_gallus
ENSCLAG00000006748	SMG6	84	57.746	ENSGAFG00000000379	smg6	74	53.438	Gambusia_affinis
ENSCLAG00000006748	SMG6	94	53.719	ENSGACG00000020521	smg6	99	53.314	Gasterosteus_aculeatus
ENSCLAG00000006748	SMG6	93	82.883	ENSGAGG00000025617	SMG6	100	72.482	Gopherus_agassizii
ENSCLAG00000006748	SMG6	100	92.812	ENSGGOG00000017156	SMG6	100	92.812	Gorilla_gorilla
ENSCLAG00000006748	SMG6	84	59.434	ENSHBUG00000021311	smg6	78	52.772	Haplochromis_burtoni
ENSCLAG00000006748	SMG6	100	97.059	ENSHGLG00000012882	SMG6	100	97.059	Heterocephalus_glaber_female
ENSCLAG00000006748	SMG6	100	97.059	ENSHGLG00100017815	SMG6	100	97.059	Heterocephalus_glaber_male
ENSCLAG00000006748	SMG6	89	59.556	ENSHCOG00000008761	smg6	96	53.551	Hippocampus_comes
ENSCLAG00000006748	SMG6	82	63.000	ENSIPUG00000012493	smg6	75	55.064	Ictalurus_punctatus
ENSCLAG00000006748	SMG6	100	97.059	ENSSTOG00000028127	SMG6	100	97.059	Ictidomys_tridecemlineatus
ENSCLAG00000006748	SMG6	79	90.098	ENSJJAG00000015367	Smg6	95	88.128	Jaculus_jaculus
ENSCLAG00000006748	SMG6	98	54.032	ENSKMAG00000000279	smg6	76	53.875	Kryptolebias_marmoratus
ENSCLAG00000006748	SMG6	88	52.363	ENSLBEG00000002184	smg6	76	52.553	Labrus_bergylta
ENSCLAG00000006748	SMG6	94	80.357	ENSLACG00000003276	SMG6	100	79.785	Latimeria_chalumnae
ENSCLAG00000006748	SMG6	56	57.843	ENSLACG00000000806	-	98	59.975	Latimeria_chalumnae
ENSCLAG00000006748	SMG6	93	67.111	ENSLOCG00000006448	smg6	99	54.814	Lepisosteus_oculatus
ENSCLAG00000006748	SMG6	100	92.107	ENSLAFG00000001261	SMG6	100	92.107	Loxodonta_africana
ENSCLAG00000006748	SMG6	100	92.459	ENSMFAG00000003394	SMG6	100	92.459	Macaca_fascicularis
ENSCLAG00000006748	SMG6	100	92.389	ENSMMUG00000023161	SMG6	100	92.389	Macaca_mulatta
ENSCLAG00000006748	SMG6	94	94.643	ENSMNEG00000044592	SMG6	100	87.561	Macaca_nemestrina
ENSCLAG00000006748	SMG6	99	89.906	ENSMLEG00000029353	SMG6	99	89.906	Mandrillus_leucophaeus
ENSCLAG00000006748	SMG6	84	61.429	ENSMAMG00000020119	smg6	98	49.037	Mastacembelus_armatus
ENSCLAG00000006748	SMG6	84	59.434	ENSMZEG00005024736	smg6	80	52.651	Maylandia_zebra
ENSCLAG00000006748	SMG6	51	90.164	ENSMGAG00000017200	-	99	84.973	Meleagris_gallopavo
ENSCLAG00000006748	SMG6	74	66.763	ENSMGAG00000005401	-	99	66.040	Meleagris_gallopavo
ENSCLAG00000006748	SMG6	96	93.450	ENSMAUG00000017203	-	99	93.450	Mesocricetus_auratus
ENSCLAG00000006748	SMG6	100	94.433	ENSMICG00000012913	SMG6	100	94.433	Microcebus_murinus
ENSCLAG00000006748	SMG6	99	93.220	ENSMOCG00000019924	-	99	93.220	Microtus_ochrogaster
ENSCLAG00000006748	SMG6	100	47.858	ENSMMOG00000010883	smg6	100	48.443	Mola_mola
ENSCLAG00000006748	SMG6	95	92.511	ENSMODG00000010622	SMG6	100	85.513	Monodelphis_domestica
ENSCLAG00000006748	SMG6	73	46.667	ENSMODG00000024463	-	99	42.074	Monodelphis_domestica
ENSCLAG00000006748	SMG6	81	46.154	ENSMODG00000024395	-	99	40.705	Monodelphis_domestica
ENSCLAG00000006748	SMG6	73	48.295	ENSMODG00000024410	-	99	41.292	Monodelphis_domestica
ENSCLAG00000006748	SMG6	73	48.864	ENSMODG00000024460	-	99	41.879	Monodelphis_domestica
ENSCLAG00000006748	SMG6	84	58.768	ENSMALG00000001106	smg6	73	54.938	Monopterus_albus
ENSCLAG00000006748	SMG6	100	93.697	MGP_CAROLIEiJ_G0016729	Smg6	100	93.697	Mus_caroli
ENSCLAG00000006748	SMG6	100	93.697	ENSMUSG00000038290	Smg6	100	93.697	Mus_musculus
ENSCLAG00000006748	SMG6	100	94.538	MGP_PahariEiJ_G0017866	Smg6	100	94.538	Mus_pahari
ENSCLAG00000006748	SMG6	100	93.697	MGP_SPRETEiJ_G0017572	Smg6	100	93.697	Mus_spretus
ENSCLAG00000006748	SMG6	100	92.671	ENSMPUG00000013046	SMG6	100	92.671	Mustela_putorius_furo
ENSCLAG00000006748	SMG6	100	92.248	ENSMLUG00000005739	SMG6	100	92.248	Myotis_lucifugus
ENSCLAG00000006748	SMG6	100	94.538	ENSNGAG00000007287	Smg6	100	94.538	Nannospalax_galili
ENSCLAG00000006748	SMG6	90	56.828	ENSNBRG00000009511	smg6	87	52.142	Neolamprologus_brichardi
ENSCLAG00000006748	SMG6	100	92.435	ENSNLEG00000017171	SMG6	100	97.260	Nomascus_leucogenys
ENSCLAG00000006748	SMG6	95	91.630	ENSMEUG00000015804	SMG6	100	81.753	Notamacropus_eugenii
ENSCLAG00000006748	SMG6	71	92.262	ENSOPRG00000000579	SMG6	85	97.368	Ochotona_princeps
ENSCLAG00000006748	SMG6	95	96.053	ENSODEG00000008038	SMG6	100	89.937	Octodon_degus
ENSCLAG00000006748	SMG6	100	51.033	ENSONIG00000005594	smg6	100	51.634	Oreochromis_niloticus
ENSCLAG00000006748	SMG6	100	92.681	ENSOCUG00000013018	SMG6	100	92.892	Oryctolagus_cuniculus
ENSCLAG00000006748	SMG6	82	58.852	ENSORLG00000003317	smg6	74	54.646	Oryzias_latipes
ENSCLAG00000006748	SMG6	89	53.047	ENSORLG00020015343	smg6	78	53.233	Oryzias_latipes_hni
ENSCLAG00000006748	SMG6	89	52.928	ENSORLG00015020454	smg6	78	53.418	Oryzias_latipes_hsok
ENSCLAG00000006748	SMG6	82	58.852	ENSOMEG00000010838	smg6	79	52.460	Oryzias_melastigma
ENSCLAG00000006748	SMG6	100	93.521	ENSOGAG00000004483	SMG6	100	93.521	Otolemur_garnettii
ENSCLAG00000006748	SMG6	100	91.499	ENSOARG00000015076	SMG6	100	91.697	Ovis_aries
ENSCLAG00000006748	SMG6	100	92.812	ENSPPAG00000043296	SMG6	100	92.812	Pan_paniscus
ENSCLAG00000006748	SMG6	100	93.517	ENSPPRG00000014581	SMG6	100	93.517	Panthera_pardus
ENSCLAG00000006748	SMG6	99	93.574	ENSPTIG00000008925	SMG6	100	97.847	Panthera_tigris_altaica
ENSCLAG00000006748	SMG6	100	92.812	ENSPTRG00000008544	SMG6	100	97.456	Pan_troglodytes
ENSCLAG00000006748	SMG6	100	92.389	ENSPANG00000024588	SMG6	100	92.389	Papio_anubis
ENSCLAG00000006748	SMG6	93	80.180	ENSPSIG00000006660	SMG6	96	71.061	Pelodiscus_sinensis
ENSCLAG00000006748	SMG6	98	60.719	ENSPMGG00000000844	smg6	100	60.719	Periophthalmus_magnuspinnatus
ENSCLAG00000006748	SMG6	100	92.882	ENSPEMG00000020707	Smg6	100	92.882	Peromyscus_maniculatus_bairdii
ENSCLAG00000006748	SMG6	100	50.870	ENSPFOG00000012035	smg6	100	50.436	Poecilia_formosa
ENSCLAG00000006748	SMG6	82	59.135	ENSPLAG00000017660	smg6	74	53.061	Poecilia_latipinna
ENSCLAG00000006748	SMG6	89	57.965	ENSPMEG00000000258	smg6	74	53.375	Poecilia_mexicana
ENSCLAG00000006748	SMG6	82	60.096	ENSPREG00000010066	smg6	74	52.923	Poecilia_reticulata
ENSCLAG00000006748	SMG6	100	87.482	ENSPPYG00000007790	SMG6	100	87.482	Pongo_abelii
ENSCLAG00000006748	SMG6	100	87.738	ENSPCAG00000000552	SMG6	100	87.738	Procavia_capensis
ENSCLAG00000006748	SMG6	100	94.010	ENSPCOG00000020925	SMG6	100	94.010	Propithecus_coquereli
ENSCLAG00000006748	SMG6	94	94.643	ENSPVAG00000002159	SMG6	86	100.000	Pteropus_vampyrus
ENSCLAG00000006748	SMG6	90	56.828	ENSPNYG00000024151	smg6	86	54.552	Pundamilia_nyererei
ENSCLAG00000006748	SMG6	92	55.785	ENSPNAG00000015480	smg6	90	47.106	Pygocentrus_nattereri
ENSCLAG00000006748	SMG6	100	91.896	ENSRNOG00000003041	Smg6	100	91.896	Rattus_norvegicus
ENSCLAG00000006748	SMG6	100	92.389	ENSRBIG00000024746	SMG6	100	92.389	Rhinopithecus_bieti
ENSCLAG00000006748	SMG6	100	92.459	ENSRROG00000030423	SMG6	100	96.282	Rhinopithecus_roxellana
ENSCLAG00000006748	SMG6	100	92.178	ENSSBOG00000022518	SMG6	100	90.486	Saimiri_boliviensis_boliviensis
ENSCLAG00000006748	SMG6	87	41.784	ENSSHAG00000000380	-	99	39.130	Sarcophilus_harrisii
ENSCLAG00000006748	SMG6	95	91.189	ENSSHAG00000010045	SMG6	98	85.427	Sarcophilus_harrisii
ENSCLAG00000006748	SMG6	91	60.944	ENSSFOG00015005436	smg6	70	57.154	Scleropages_formosus
ENSCLAG00000006748	SMG6	87	58.108	ENSSMAG00000019777	smg6	73	54.326	Scophthalmus_maximus
ENSCLAG00000006748	SMG6	91	52.689	ENSSDUG00000016412	smg6	79	52.563	Seriola_dumerili
ENSCLAG00000006748	SMG6	84	58.962	ENSSLDG00000020747	smg6	83	51.606	Seriola_lalandi_dorsalis
ENSCLAG00000006748	SMG6	93	82.063	ENSSPUG00000007152	SMG6	99	69.562	Sphenodon_punctatus
ENSCLAG00000006748	SMG6	91	56.579	ENSSPAG00000015633	smg6	74	54.206	Stegastes_partitus
ENSCLAG00000006748	SMG6	100	92.042	ENSSSCG00000017826	SMG6	100	92.042	Sus_scrofa
ENSCLAG00000006748	SMG6	98	81.356	ENSTGUG00000005836	SMG6	100	72.702	Taeniopygia_guttata
ENSCLAG00000006748	SMG6	99	49.626	ENSTRUG00000000358	smg6	100	48.256	Takifugu_rubripes
ENSCLAG00000006748	SMG6	100	49.241	ENSTNIG00000016164	smg6	100	49.637	Tetraodon_nigroviridis
ENSCLAG00000006748	SMG6	95	98.529	ENSTBEG00000011424	SMG6	100	89.006	Tupaia_belangeri
ENSCLAG00000006748	SMG6	94	93.750	ENSTTRG00000001175	SMG6	91	90.909	Tursiops_truncatus
ENSCLAG00000006748	SMG6	100	92.968	ENSUAMG00000025152	SMG6	100	92.435	Ursus_americanus
ENSCLAG00000006748	SMG6	99	93.141	ENSUMAG00000009306	SMG6	100	93.141	Ursus_maritimus
ENSCLAG00000006748	SMG6	85	96.296	ENSVPAG00000000225	SMG6	88	96.296	Vicugna_pacos
ENSCLAG00000006748	SMG6	100	92.107	ENSVVUG00000021727	SMG6	100	92.107	Vulpes_vulpes
ENSCLAG00000006748	SMG6	100	59.619	ENSXETG00000023799	SMG6	100	59.314	Xenopus_tropicalis
ENSCLAG00000006748	SMG6	82	62.376	ENSXCOG00000009867	smg6	74	54.336	Xiphophorus_couchianus
ENSCLAG00000006748	SMG6	82	59.615	ENSXMAG00000010321	smg6	74	53.468	Xiphophorus_maculatus