EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCLAG00000007457 (Gene tree)
Gene ID: 102016004
Gene Symbol: MBD1
Alias: CXXC3|PCM1
Full Name: methyl-CpG binding domain protein 1
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Minus strand
Length: 14869 bases
Position: chrJH721862.1:35319810-35334678
Accession: 102016004
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000010808	MBD	PF01429.19	1.3e-15	1	1
ENSCLAP00000010807	MBD	PF01429.19	1.4e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000010940	MBD1-201	2456	-	ENSCLAP00000010807	742 (aa)	-	-
ENSCLAT00000010941	MBD1-202	2363	XM_013510642	ENSCLAP00000010808	711 (aa)	XP_013366096	UPI00038EA34B

Gene Model

Click here to download ENSCLAG00000007457's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000007457's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000007457	MBD1	89	85.397	ENSG00000141644	MBD1	100	85.397	Homo_sapiens
ENSCLAG00000007457	MBD1	90	84.038	ENSAMEG00000000238	MBD1	98	83.617	Ailuropoda_melanoleuca
ENSCLAG00000007457	MBD1	57	42.857	ENSACAG00000006091	-	100	42.233	Anolis_carolinensis
ENSCLAG00000007457	MBD1	89	84.921	ENSANAG00000036253	MBD1	100	84.921	Aotus_nancymaae
ENSCLAG00000007457	MBD1	89	83.518	ENSBTAG00000003801	MBD1	100	83.518	Bos_taurus
ENSCLAG00000007457	MBD1	89	83.956	ENSCJAG00000004959	MBD1	100	83.956	Callithrix_jacchus
ENSCLAG00000007457	MBD1	90	83.229	ENSCAFG00000018928	MBD1	97	83.856	Canis_familiaris
ENSCLAG00000007457	MBD1	87	82.504	ENSCAFG00020024272	MBD1	97	83.146	Canis_lupus_dingo
ENSCLAG00000007457	MBD1	89	83.360	ENSCHIG00000021134	MBD1	100	83.360	Capra_hircus
ENSCLAG00000007457	MBD1	89	83.968	ENSTSYG00000000509	MBD1	100	83.968	Carlito_syrichta
ENSCLAG00000007457	MBD1	87	71.746	ENSCAPG00000015782	MBD1	96	71.519	Cavia_aperea
ENSCLAG00000007457	MBD1	86	90.557	ENSCPOG00000001671	MBD1	98	90.557	Cavia_porcellus
ENSCLAG00000007457	MBD1	93	79.346	ENSCCAG00000034600	MBD1	100	74.127	Cebus_capucinus
ENSCLAG00000007457	MBD1	89	85.556	ENSCATG00000029959	MBD1	100	85.556	Cercocebus_atys
ENSCLAG00000007457	MBD1	89	82.381	ENSCSAG00000018070	MBD1	100	82.063	Chlorocebus_sabaeus
ENSCLAG00000007457	MBD1	89	85.238	ENSCANG00000033425	MBD1	100	85.238	Colobus_angolensis_palliatus
ENSCLAG00000007457	MBD1	89	72.871	ENSCGRG00001014843	Mbd1	100	72.713	Cricetulus_griseus_chok1gshd
ENSCLAG00000007457	MBD1	85	77.729	ENSCGRG00000014135	Mbd1	96	77.729	Cricetulus_griseus_crigri
ENSCLAG00000007457	MBD1	89	78.288	ENSDNOG00000015998	MBD1	100	79.715	Dasypus_novemcinctus
ENSCLAG00000007457	MBD1	87	67.042	ENSDORG00000013917	Mbd1	97	66.559	Dipodomys_ordii
ENSCLAG00000007457	MBD1	89	84.810	ENSEASG00005003857	MBD1	100	84.810	Equus_asinus_asinus
ENSCLAG00000007457	MBD1	92	83.562	ENSECAG00000011497	MBD1	83	83.562	Equus_caballus
ENSCLAG00000007457	MBD1	92	83.866	ENSFCAG00000015730	MBD1	100	84.968	Felis_catus
ENSCLAG00000007457	MBD1	81	90.411	ENSFDAG00000011085	MBD1	96	90.411	Fukomys_damarensis
ENSCLAG00000007457	MBD1	58	31.818	ENSFHEG00000020120	mbd1b	51	34.091	Fundulus_heteroclitus
ENSCLAG00000007457	MBD1	57	30.296	ENSGACG00000012106	-	58	33.161	Gasterosteus_aculeatus
ENSCLAG00000007457	MBD1	89	85.238	ENSGGOG00000016966	MBD1	100	85.238	Gorilla_gorilla
ENSCLAG00000007457	MBD1	89	93.810	ENSHGLG00000008740	MBD1	100	93.810	Heterocephalus_glaber_female
ENSCLAG00000007457	MBD1	82	93.312	ENSHGLG00100005198	MBD1	100	90.774	Heterocephalus_glaber_male
ENSCLAG00000007457	MBD1	54	53.846	ENSHCOG00000009952	mbd1b	51	36.667	Hippocampus_comes
ENSCLAG00000007457	MBD1	58	35.754	ENSIPUG00000015243	-	51	47.191	Ictalurus_punctatus
ENSCLAG00000007457	MBD1	89	82.656	ENSSTOG00000007780	MBD1	100	82.812	Ictidomys_tridecemlineatus
ENSCLAG00000007457	MBD1	87	65.700	ENSJJAG00000022859	Mbd1	96	65.378	Jaculus_jaculus
ENSCLAG00000007457	MBD1	59	38.038	ENSLACG00000002414	-	52	64.062	Latimeria_chalumnae
ENSCLAG00000007457	MBD1	87	69.268	ENSLAFG00000031328	MBD1	97	69.745	Loxodonta_africana
ENSCLAG00000007457	MBD1	89	85.556	ENSMFAG00000026335	MBD1	100	85.556	Macaca_fascicularis
ENSCLAG00000007457	MBD1	89	85.556	ENSMMUG00000009050	MBD1	100	85.556	Macaca_mulatta
ENSCLAG00000007457	MBD1	89	85.556	ENSMNEG00000038822	MBD1	100	85.556	Macaca_nemestrina
ENSCLAG00000007457	MBD1	89	85.556	ENSMLEG00000043121	MBD1	100	85.556	Mandrillus_leucophaeus
ENSCLAG00000007457	MBD1	60	30.476	ENSMAMG00000023341	-	63	30.476	Mastacembelus_armatus
ENSCLAG00000007457	MBD1	89	82.595	ENSMICG00000006414	MBD1	100	84.000	Microcebus_murinus
ENSCLAG00000007457	MBD1	59	41.995	ENSMODG00000001286	-	58	40.698	Monodelphis_domestica
ENSCLAG00000007457	MBD1	87	65.237	ENSMUSG00000024561	Mbd1	97	65.084	Mus_musculus
ENSCLAG00000007457	MBD1	89	65.749	MGP_PahariEiJ_G0019128	Mbd1	100	66.055	Mus_pahari
ENSCLAG00000007457	MBD1	87	66.304	MGP_SPRETEiJ_G0023304	Mbd1	99	66.615	Mus_spretus
ENSCLAG00000007457	MBD1	90	83.568	ENSMPUG00000008843	MBD1	97	83.881	Mustela_putorius_furo
ENSCLAG00000007457	MBD1	90	82.418	ENSMLUG00000008286	MBD1	97	82.418	Myotis_lucifugus
ENSCLAG00000007457	MBD1	87	65.769	ENSNGAG00000011412	Mbd1	96	65.087	Nannospalax_galili
ENSCLAG00000007457	MBD1	83	70.968	ENSNLEG00000032711	-	88	70.968	Nomascus_leucogenys
ENSCLAG00000007457	MBD1	89	84.603	ENSNLEG00000011661	-	100	84.603	Nomascus_leucogenys
ENSCLAG00000007457	MBD1	89	71.429	ENSOPRG00000007647	MBD1	100	71.429	Ochotona_princeps
ENSCLAG00000007457	MBD1	87	76.640	ENSODEG00000018451	MBD1	97	77.280	Octodon_degus
ENSCLAG00000007457	MBD1	76	44.286	ENSOANG00000014593	-	100	44.643	Ornithorhynchus_anatinus
ENSCLAG00000007457	MBD1	89	82.884	ENSOCUG00000006554	MBD1	100	83.835	Oryctolagus_cuniculus
ENSCLAG00000007457	MBD1	91	81.212	ENSOGAG00000003784	MBD1	99	81.212	Otolemur_garnettii
ENSCLAG00000007457	MBD1	92	80.945	ENSOARG00000004218	MBD1	97	80.945	Ovis_aries
ENSCLAG00000007457	MBD1	89	82.381	ENSPPAG00000038886	MBD1	100	82.063	Pan_paniscus
ENSCLAG00000007457	MBD1	89	84.810	ENSPPRG00000021387	MBD1	100	85.127	Panthera_pardus
ENSCLAG00000007457	MBD1	89	84.968	ENSPTIG00000021231	MBD1	100	85.285	Panthera_tigris_altaica
ENSCLAG00000007457	MBD1	89	85.556	ENSPTRG00000010021	MBD1	100	85.556	Pan_troglodytes
ENSCLAG00000007457	MBD1	89	85.397	ENSPANG00000010867	MBD1	100	85.397	Papio_anubis
ENSCLAG00000007457	MBD1	87	58.411	ENSPEMG00000022630	Mbd1	97	58.034	Peromyscus_maniculatus_bairdii
ENSCLAG00000007457	MBD1	85	46.870	ENSPCIG00000027937	-	79	46.080	Phascolarctos_cinereus
ENSCLAG00000007457	MBD1	89	82.437	ENSPPYG00000009158	MBD1	94	81.135	Pongo_abelii
ENSCLAG00000007457	MBD1	88	70.952	ENSPCAG00000001648	MBD1	99	70.952	Procavia_capensis
ENSCLAG00000007457	MBD1	89	83.677	ENSPCOG00000012450	MBD1	100	86.222	Propithecus_coquereli
ENSCLAG00000007457	MBD1	88	49.392	ENSRNOG00000024104	Mbd1	96	50.938	Rattus_norvegicus
ENSCLAG00000007457	MBD1	89	78.730	ENSRBIG00000041294	MBD1	100	78.730	Rhinopithecus_bieti
ENSCLAG00000007457	MBD1	89	85.079	ENSRROG00000032517	MBD1	100	85.079	Rhinopithecus_roxellana
ENSCLAG00000007457	MBD1	93	83.804	ENSSBOG00000027169	MBD1	100	75.556	Saimiri_boliviensis_boliviensis
ENSCLAG00000007457	MBD1	68	44.106	ENSSHAG00000003661	-	100	44.534	Sarcophilus_harrisii
ENSCLAG00000007457	MBD1	87	81.350	ENSSSCG00000004516	MBD1	97	81.511	Sus_scrofa
ENSCLAG00000007457	MBD1	58	81.250	ENSTBEG00000012651	-	68	81.250	Tupaia_belangeri
ENSCLAG00000007457	MBD1	89	76.582	ENSTTRG00000015523	MBD1	100	77.373	Tursiops_truncatus
ENSCLAG00000007457	MBD1	87	80.417	ENSUAMG00000004752	MBD1	97	81.250	Ursus_americanus
ENSCLAG00000007457	MBD1	87	83.683	ENSUMAG00000002947	MBD1	100	80.063	Ursus_maritimus