EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCLAG00000007545 (Gene tree)
Gene ID: 102028263
Gene Symbol: PRDM4
Alias: PFM1
Full Name: PR/SET domain 4
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Minus strand
Length: 17063 bases
Position: chrJH721865.1:41336199-41353261
Accession: 102028263
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000010933	zf-C2H2	PF00096.26	1.1e-20	1	2
ENSCLAP00000010933	zf-C2H2	PF00096.26	1.1e-20	2	2
ENSCLAP00000010933	zf-met	PF12874.7	2.5e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000011068	PRDM4-201	2412	XM_005374642	ENSCLAP00000010933	803 (aa)	XP_005374699	-

Gene Model

Click here to download ENSCLAG00000007545's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000007545's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCLAG00000007545	PRDM4	50	30.233	ENSCLAG00000001937	PRDM14	55	32.759

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000007545	PRDM4	100	93.159	ENSG00000110851	PRDM4	100	94.265	Homo_sapiens
ENSCLAG00000007545	PRDM4	100	92.919	ENSAMEG00000016174	PRDM4	99	92.671	Ailuropoda_melanoleuca
ENSCLAG00000007545	PRDM4	100	84.204	ENSAPLG00000009846	PRDM4	99	83.582	Anas_platyrhynchos
ENSCLAG00000007545	PRDM4	100	93.035	ENSANAG00000024800	PRDM4	99	92.653	Aotus_nancymaae
ENSCLAG00000007545	PRDM4	100	92.413	ENSBTAG00000012999	PRDM4	99	92.413	Bos_taurus
ENSCLAG00000007545	PRDM4	100	92.662	ENSCJAG00000015261	PRDM4	99	92.289	Callithrix_jacchus
ENSCLAG00000007545	PRDM4	100	93.408	ENSCAFG00000001788	PRDM4	99	93.159	Canis_familiaris
ENSCLAG00000007545	PRDM4	100	93.408	ENSCAFG00020004916	PRDM4	99	93.159	Canis_lupus_dingo
ENSCLAG00000007545	PRDM4	100	92.164	ENSCHIG00000019409	PRDM4	99	92.164	Capra_hircus
ENSCLAG00000007545	PRDM4	100	92.662	ENSTSYG00000009248	PRDM4	99	92.289	Carlito_syrichta
ENSCLAG00000007545	PRDM4	100	91.315	ENSCAPG00000013937	PRDM4	99	91.563	Cavia_aperea
ENSCLAG00000007545	PRDM4	100	90.764	ENSCPOG00000022385	PRDM4	100	91.010	Cavia_porcellus
ENSCLAG00000007545	PRDM4	100	93.159	ENSCCAG00000036033	PRDM4	99	92.786	Cebus_capucinus
ENSCLAG00000007545	PRDM4	100	92.910	ENSCATG00000044797	PRDM4	99	92.537	Cercocebus_atys
ENSCLAG00000007545	PRDM4	100	93.035	ENSCSAG00000002896	PRDM4	99	92.662	Chlorocebus_sabaeus
ENSCLAG00000007545	PRDM4	60	96.226	ENSCHOG00000001744	PRDM4	75	96.226	Choloepus_hoffmanni
ENSCLAG00000007545	PRDM4	100	85.199	ENSCPBG00000023187	PRDM4	100	84.950	Chrysemys_picta_bellii
ENSCLAG00000007545	PRDM4	100	93.159	ENSCANG00000021804	PRDM4	99	92.786	Colobus_angolensis_palliatus
ENSCLAG00000007545	PRDM4	100	90.547	ENSCGRG00001015102	-	100	90.050	Cricetulus_griseus_chok1gshd
ENSCLAG00000007545	PRDM4	96	90.710	ENSCGRG00000004044	-	100	90.194	Cricetulus_griseus_crigri
ENSCLAG00000007545	PRDM4	100	91.667	ENSDNOG00000032478	PRDM4	99	92.154	Dasypus_novemcinctus
ENSCLAG00000007545	PRDM4	100	78.731	ENSDORG00000015081	-	100	89.320	Dipodomys_ordii
ENSCLAG00000007545	PRDM4	94	45.328	ENSEBUG00000003775	prdm4	99	45.542	Eptatretus_burgeri
ENSCLAG00000007545	PRDM4	100	92.910	ENSECAG00000015423	PRDM4	99	92.662	Equus_caballus
ENSCLAG00000007545	PRDM4	94	88.654	ENSEEUG00000006569	PRDM4	99	88.522	Erinaceus_europaeus
ENSCLAG00000007545	PRDM4	99	58.525	ENSELUG00000015265	prdm4	99	58.525	Esox_lucius
ENSCLAG00000007545	PRDM4	100	92.910	ENSFCAG00000022478	PRDM4	99	92.662	Felis_catus
ENSCLAG00000007545	PRDM4	100	84.701	ENSFALG00000013342	PRDM4	100	84.204	Ficedula_albicollis
ENSCLAG00000007545	PRDM4	100	84.491	ENSGALG00000012619	PRDM4	99	83.871	Gallus_gallus
ENSCLAG00000007545	PRDM4	100	84.950	ENSGAGG00000002763	PRDM4	95	84.701	Gopherus_agassizii
ENSCLAG00000007545	PRDM4	100	93.284	ENSGGOG00000001244	PRDM4	99	92.910	Gorilla_gorilla
ENSCLAG00000007545	PRDM4	100	92.910	ENSHGLG00000004590	PRDM4	98	92.413	Heterocephalus_glaber_female
ENSCLAG00000007545	PRDM4	100	92.795	ENSHGLG00100007464	PRDM4	100	92.298	Heterocephalus_glaber_male
ENSCLAG00000007545	PRDM4	95	60.847	ENSIPUG00000024162	prdm4	94	60.719	Ictalurus_punctatus
ENSCLAG00000007545	PRDM4	100	92.413	ENSSTOG00000016168	PRDM4	99	92.040	Ictidomys_tridecemlineatus
ENSCLAG00000007545	PRDM4	81	92.954	ENSJJAG00000022448	-	95	92.954	Jaculus_jaculus
ENSCLAG00000007545	PRDM4	100	71.902	ENSLACG00000007452	PRDM4	99	71.656	Latimeria_chalumnae
ENSCLAG00000007545	PRDM4	78	41.739	ENSLOCG00000017092	prdm4	93	53.913	Lepisosteus_oculatus
ENSCLAG00000007545	PRDM4	98	93.147	ENSLAFG00000001483	PRDM4	100	92.893	Loxodonta_africana
ENSCLAG00000007545	PRDM4	100	93.159	ENSMFAG00000041862	PRDM4	99	92.786	Macaca_fascicularis
ENSCLAG00000007545	PRDM4	100	93.159	ENSMMUG00000015550	PRDM4	99	92.786	Macaca_mulatta
ENSCLAG00000007545	PRDM4	100	92.910	ENSMNEG00000032319	PRDM4	99	92.537	Macaca_nemestrina
ENSCLAG00000007545	PRDM4	100	93.035	ENSMLEG00000039607	PRDM4	99	92.662	Mandrillus_leucophaeus
ENSCLAG00000007545	PRDM4	100	77.076	ENSMGAG00000012815	PRDM4	100	76.456	Meleagris_gallopavo
ENSCLAG00000007545	PRDM4	100	91.542	ENSMICG00000007807	PRDM4	99	91.169	Microcebus_murinus
ENSCLAG00000007545	PRDM4	100	90.796	ENSMOCG00000000753	Prdm4	99	90.423	Microtus_ochrogaster
ENSCLAG00000007545	PRDM4	100	90.547	ENSMUSG00000035529	Prdm4	100	90.299	Mus_musculus
ENSCLAG00000007545	PRDM4	100	91.294	MGP_PahariEiJ_G0031398	Prdm4	100	90.672	Mus_pahari
ENSCLAG00000007545	PRDM4	100	91.045	MGP_SPRETEiJ_G0016505	Prdm4	100	90.796	Mus_spretus
ENSCLAG00000007545	PRDM4	100	87.252	ENSMPUG00000012238	PRDM4	99	86.262	Mustela_putorius_furo
ENSCLAG00000007545	PRDM4	100	92.910	ENSMLUG00000000767	PRDM4	99	92.413	Myotis_lucifugus
ENSCLAG00000007545	PRDM4	100	90.796	ENSNGAG00000018627	Prdm4	100	91.045	Nannospalax_galili
ENSCLAG00000007545	PRDM4	100	93.284	ENSNLEG00000006748	PRDM4	99	92.910	Nomascus_leucogenys
ENSCLAG00000007545	PRDM4	90	86.836	ENSMEUG00000004495	PRDM4	89	86.159	Notamacropus_eugenii
ENSCLAG00000007545	PRDM4	88	92.992	ENSOPRG00000010192	PRDM4	89	92.992	Ochotona_princeps
ENSCLAG00000007545	PRDM4	100	94.396	ENSODEG00000014750	PRDM4	99	94.521	Octodon_degus
ENSCLAG00000007545	PRDM4	100	87.811	ENSOANG00000005526	PRDM4	99	87.438	Ornithorhynchus_anatinus
ENSCLAG00000007545	PRDM4	94	93.343	ENSOCUG00000012859	PRDM4	96	93.059	Oryctolagus_cuniculus
ENSCLAG00000007545	PRDM4	100	92.777	ENSOGAG00000011945	PRDM4	100	92.777	Otolemur_garnettii
ENSCLAG00000007545	PRDM4	100	92.164	ENSOARG00000017955	PRDM4	99	92.164	Ovis_aries
ENSCLAG00000007545	PRDM4	100	93.159	ENSPPAG00000038438	PRDM4	99	92.786	Pan_paniscus
ENSCLAG00000007545	PRDM4	100	92.910	ENSPPRG00000004144	PRDM4	99	92.662	Panthera_pardus
ENSCLAG00000007545	PRDM4	100	92.910	ENSPTIG00000005847	PRDM4	99	92.662	Panthera_tigris_altaica
ENSCLAG00000007545	PRDM4	100	93.159	ENSPTRG00000005400	PRDM4	99	92.786	Pan_troglodytes
ENSCLAG00000007545	PRDM4	100	93.159	ENSPANG00000022084	PRDM4	99	92.786	Papio_anubis
ENSCLAG00000007545	PRDM4	99	59.198	ENSPKIG00000000875	prdm4	99	59.198	Paramormyrops_kingsleyae
ENSCLAG00000007545	PRDM4	91	79.227	ENSPSIG00000012066	PRDM4	100	79.227	Pelodiscus_sinensis
ENSCLAG00000007545	PRDM4	100	91.915	ENSPEMG00000014598	Prdm4	100	91.418	Peromyscus_maniculatus_bairdii
ENSCLAG00000007545	PRDM4	100	87.732	ENSPCIG00000009471	PRDM4	99	87.237	Phascolarctos_cinereus
ENSCLAG00000007545	PRDM4	100	93.159	ENSPPYG00000004913	PRDM4	99	92.786	Pongo_abelii
ENSCLAG00000007545	PRDM4	83	91.200	ENSPCAG00000009987	PRDM4	83	90.909	Procavia_capensis
ENSCLAG00000007545	PRDM4	100	91.294	ENSPCOG00000021060	PRDM4	99	90.920	Propithecus_coquereli
ENSCLAG00000007545	PRDM4	100	91.294	ENSPVAG00000001596	PRDM4	99	91.925	Pteropus_vampyrus
ENSCLAG00000007545	PRDM4	100	90.683	ENSRNOG00000004962	Prdm4	100	90.062	Rattus_norvegicus
ENSCLAG00000007545	PRDM4	100	93.159	ENSRBIG00000035488	PRDM4	99	92.786	Rhinopithecus_bieti
ENSCLAG00000007545	PRDM4	100	93.284	ENSRROG00000012779	PRDM4	99	92.910	Rhinopithecus_roxellana
ENSCLAG00000007545	PRDM4	100	93.035	ENSSBOG00000000403	PRDM4	99	92.662	Saimiri_boliviensis_boliviensis
ENSCLAG00000007545	PRDM4	99	62.225	ENSSFOG00015023358	prdm4	98	61.689	Scleropages_formosus
ENSCLAG00000007545	PRDM4	100	92.910	ENSSSCG00000000160	PRDM4	99	92.662	Sus_scrofa
ENSCLAG00000007545	PRDM4	100	84.950	ENSTGUG00000010962	-	99	84.453	Taeniopygia_guttata
ENSCLAG00000007545	PRDM4	74	85.497	ENSTBEG00000001732	PRDM4	84	84.992	Tupaia_belangeri
ENSCLAG00000007545	PRDM4	100	93.408	ENSTTRG00000011056	PRDM4	99	93.159	Tursiops_truncatus
ENSCLAG00000007545	PRDM4	100	92.786	ENSUAMG00000022796	PRDM4	99	92.537	Ursus_americanus
ENSCLAG00000007545	PRDM4	100	92.786	ENSUMAG00000017231	PRDM4	99	92.537	Ursus_maritimus
ENSCLAG00000007545	PRDM4	100	92.413	ENSVPAG00000002215	PRDM4	100	92.164	Vicugna_pacos
ENSCLAG00000007545	PRDM4	100	93.408	ENSVVUG00000023397	PRDM4	99	93.159	Vulpes_vulpes