EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCLAG00000007962 (Gene tree)
Gene ID: 102008573
Gene Symbol: R3HDM1
Alias: KIAA0029|R3HDM
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Plus strand
Length: 102724 bases
Position: chrJH721900.1:2976012-3078735
Accession: 102008573
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000011547	R3H	PF01424.22	2.8e-12	1	1
ENSCLAP00000011545	R3H	PF01424.22	5.9e-12	1	1
ENSCLAP00000011546	R3H	PF01424.22	1.7e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000011684	R3HDM1-203	861	-	ENSCLAP00000011547	287 (aa)	-	-
ENSCLAT00000011685	R3HDM1-204	6092	-	ENSCLAP00000011548	427 (aa)	-	-
ENSCLAT00000011682	R3HDM1-201	1458	-	ENSCLAP00000011545	486 (aa)	-	-
ENSCLAT00000011683	R3HDM1-202	3408	XM_013517471	ENSCLAP00000011546	1135 (aa)	XP_013372925	-

Gene Model

Click here to download ENSCLAG00000007962's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000007962's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCLAG00000007962	R3HDM1	80	68.803	ENSCLAG00000011997	R3HDM2	94	56.968
ENSCLAG00000007962	R3HDM1	92	58.042	ENSCLAG00000007764	ARPP21	94	48.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000007962	R3HDM1	99	93.286	ENSG00000048991	R3HDM1	99	93.286	Homo_sapiens
ENSCLAG00000007962	R3HDM1	100	63.545	ENSAPOG00000020850	r3hdm1	97	48.260	Acanthochromis_polyacanthus
ENSCLAG00000007962	R3HDM1	100	90.033	ENSAMEG00000014886	R3HDM1	100	89.622	Ailuropoda_melanoleuca
ENSCLAG00000007962	R3HDM1	90	54.911	ENSACIG00000018791	-	81	56.691	Amphilophus_citrinellus
ENSCLAG00000007962	R3HDM1	100	63.211	ENSAOCG00000005192	r3hdm1	99	48.148	Amphiprion_ocellaris
ENSCLAG00000007962	R3HDM1	100	59.044	ENSAPEG00000016108	r3hdm1	99	46.204	Amphiprion_percula
ENSCLAG00000007962	R3HDM1	100	58.219	ENSATEG00000000232	r3hdm1	99	45.488	Anabas_testudineus
ENSCLAG00000007962	R3HDM1	100	77.076	ENSAPLG00000015231	R3HDM1	100	75.154	Anas_platyrhynchos
ENSCLAG00000007962	R3HDM1	100	76.856	ENSACAG00000001676	R3HDM1	100	77.031	Anolis_carolinensis
ENSCLAG00000007962	R3HDM1	100	93.621	ENSANAG00000035334	R3HDM1	100	89.270	Aotus_nancymaae
ENSCLAG00000007962	R3HDM1	82	64.029	ENSACLG00000027282	r3hdm1	94	47.575	Astatotilapia_calliptera
ENSCLAG00000007962	R3HDM1	79	57.328	ENSAMXG00000020587	arpp21	83	59.109	Astyanax_mexicanus
ENSCLAG00000007962	R3HDM1	88	70.914	ENSAMXG00000003536	r3hdm1	91	72.271	Astyanax_mexicanus
ENSCLAG00000007962	R3HDM1	99	67.647	ENSAMXG00000012861	R3HDM1	100	70.913	Astyanax_mexicanus
ENSCLAG00000007962	R3HDM1	100	91.484	ENSBTAG00000013302	R3HDM1	100	91.484	Bos_taurus
ENSCLAG00000007962	R3HDM1	100	93.621	ENSCJAG00000011718	R3HDM1	100	88.918	Callithrix_jacchus
ENSCLAG00000007962	R3HDM1	100	90.033	ENSCAFG00000005075	R3HDM1	100	89.886	Canis_familiaris
ENSCLAG00000007962	R3HDM1	100	92.443	ENSCAFG00020016119	R3HDM1	100	92.355	Canis_lupus_dingo
ENSCLAG00000007962	R3HDM1	100	91.396	ENSCHIG00000020851	R3HDM1	100	91.396	Capra_hircus
ENSCLAG00000007962	R3HDM1	100	83.624	ENSCAPG00000013043	-	100	83.624	Cavia_aperea
ENSCLAG00000007962	R3HDM1	100	94.019	ENSCPOG00000012784	R3HDM1	100	94.515	Cavia_porcellus
ENSCLAG00000007962	R3HDM1	100	93.827	ENSCCAG00000027199	R3HDM1	100	88.918	Cebus_capucinus
ENSCLAG00000007962	R3HDM1	100	90.781	ENSCATG00000023642	R3HDM1	100	90.869	Cercocebus_atys
ENSCLAG00000007962	R3HDM1	100	90.694	ENSCSAG00000016356	R3HDM1	100	90.781	Chlorocebus_sabaeus
ENSCLAG00000007962	R3HDM1	88	77.487	ENSCHOG00000013638	R3HDM1	91	77.618	Choloepus_hoffmanni
ENSCLAG00000007962	R3HDM1	87	80.471	ENSCPBG00000009645	R3HDM1	100	91.144	Chrysemys_picta_bellii
ENSCLAG00000007962	R3HDM1	100	89.182	ENSCANG00000034748	R3HDM1	100	89.182	Colobus_angolensis_palliatus
ENSCLAG00000007962	R3HDM1	100	89.369	ENSCGRG00001012357	R3hdm1	97	90.212	Cricetulus_griseus_chok1gshd
ENSCLAG00000007962	R3HDM1	100	93.728	ENSCGRG00000012080	R3hdm1	100	93.728	Cricetulus_griseus_crigri
ENSCLAG00000007962	R3HDM1	81	66.809	ENSCSEG00000008944	r3hdm1	95	43.613	Cynoglossus_semilaevis
ENSCLAG00000007962	R3HDM1	100	63.211	ENSCVAG00000007582	r3hdm1	99	47.814	Cyprinodon_variegatus
ENSCLAG00000007962	R3HDM1	79	55.263	ENSDARG00000061081	arpp21	87	35.799	Danio_rerio
ENSCLAG00000007962	R3HDM1	100	85.315	ENSDNOG00000000771	R3HDM1	100	85.402	Dasypus_novemcinctus
ENSCLAG00000007962	R3HDM1	100	94.774	ENSDORG00000027689	-	100	94.774	Dipodomys_ordii
ENSCLAG00000007962	R3HDM1	100	85.714	ENSETEG00000013606	R3HDM1	100	78.295	Echinops_telfairi
ENSCLAG00000007962	R3HDM1	87	50.223	ENSEBUG00000014746	arpp21	97	40.576	Eptatretus_burgeri
ENSCLAG00000007962	R3HDM1	100	92.091	ENSEASG00005007392	R3HDM1	100	95.074	Equus_asinus_asinus
ENSCLAG00000007962	R3HDM1	100	94.425	ENSECAG00000019114	R3HDM1	100	95.074	Equus_caballus
ENSCLAG00000007962	R3HDM1	93	85.144	ENSEEUG00000012589	R3HDM1	91	84.133	Erinaceus_europaeus
ENSCLAG00000007962	R3HDM1	80	79.828	ENSELUG00000004909	R3HDM1	99	53.089	Esox_lucius
ENSCLAG00000007962	R3HDM1	77	69.196	ENSELUG00000014413	r3hdm1	100	50.218	Esox_lucius
ENSCLAG00000007962	R3HDM1	100	95.062	ENSFCAG00000027113	R3HDM1	100	95.567	Felis_catus
ENSCLAG00000007962	R3HDM1	100	77.409	ENSFALG00000013731	R3HDM1	93	68.190	Ficedula_albicollis
ENSCLAG00000007962	R3HDM1	100	95.679	ENSFDAG00000016478	R3HDM1	100	95.679	Fukomys_damarensis
ENSCLAG00000007962	R3HDM1	100	64.846	ENSFHEG00000018713	r3hdm1	100	47.285	Fundulus_heteroclitus
ENSCLAG00000007962	R3HDM1	78	71.883	ENSGMOG00000006042	-	74	68.398	Gadus_morhua
ENSCLAG00000007962	R3HDM1	100	72.125	ENSGALG00000012246	R3HDM1	99	84.918	Gallus_gallus
ENSCLAG00000007962	R3HDM1	89	61.556	ENSGAFG00000006203	r3hdm1	94	47.975	Gambusia_affinis
ENSCLAG00000007962	R3HDM1	80	72.458	ENSGACG00000014925	r3hdm1	99	49.141	Gasterosteus_aculeatus
ENSCLAG00000007962	R3HDM1	100	83.885	ENSGAGG00000007840	R3HDM1	96	81.955	Gopherus_agassizii
ENSCLAG00000007962	R3HDM1	100	93.380	ENSGGOG00000008156	R3HDM1	100	88.742	Gorilla_gorilla
ENSCLAG00000007962	R3HDM1	100	61.538	ENSHBUG00000015737	R3HDM1	90	57.170	Haplochromis_burtoni
ENSCLAG00000007962	R3HDM1	100	95.473	ENSHGLG00000015718	R3HDM1	100	95.473	Heterocephalus_glaber_female
ENSCLAG00000007962	R3HDM1	100	95.473	ENSHGLG00100003184	-	100	95.473	Heterocephalus_glaber_male
ENSCLAG00000007962	R3HDM1	100	68.926	ENSHGLG00100015374	-	100	68.750	Heterocephalus_glaber_male
ENSCLAG00000007962	R3HDM1	82	60.732	ENSHCOG00000013366	r3hdm1	88	60.750	Hippocampus_comes
ENSCLAG00000007962	R3HDM1	57	68.421	ENSHCOG00000005036	-	56	78.571	Hippocampus_comes
ENSCLAG00000007962	R3HDM1	91	62.084	ENSIPUG00000013629	r3hdm1	95	67.913	Ictalurus_punctatus
ENSCLAG00000007962	R3HDM1	99	67.340	ENSIPUG00000001676	R3HDM1	99	64.048	Ictalurus_punctatus
ENSCLAG00000007962	R3HDM1	100	95.267	ENSSTOG00000007572	R3HDM1	100	95.267	Ictidomys_tridecemlineatus
ENSCLAG00000007962	R3HDM1	100	92.683	ENSJJAG00000018208	-	100	92.683	Jaculus_jaculus
ENSCLAG00000007962	R3HDM1	59	76.316	ENSKMAG00000013373	-	89	76.316	Kryptolebias_marmoratus
ENSCLAG00000007962	R3HDM1	100	57.338	ENSLBEG00000027981	-	87	63.275	Labrus_bergylta
ENSCLAG00000007962	R3HDM1	100	73.052	ENSLACG00000005334	R3HDM1	100	72.011	Latimeria_chalumnae
ENSCLAG00000007962	R3HDM1	99	71.053	ENSLOCG00000001641	r3hdm1	100	64.974	Lepisosteus_oculatus
ENSCLAG00000007962	R3HDM1	100	91.564	ENSLAFG00000009065	R3HDM1	100	91.476	Loxodonta_africana
ENSCLAG00000007962	R3HDM1	94	95.425	ENSMFAG00000030331	R3HDM1	100	95.074	Macaca_fascicularis
ENSCLAG00000007962	R3HDM1	94	95.207	ENSMMUG00000009844	R3HDM1	100	88.918	Macaca_mulatta
ENSCLAG00000007962	R3HDM1	94	95.425	ENSMNEG00000027793	R3HDM1	100	95.074	Macaca_nemestrina
ENSCLAG00000007962	R3HDM1	94	95.425	ENSMLEG00000043189	R3HDM1	100	89.094	Mandrillus_leucophaeus
ENSCLAG00000007962	R3HDM1	100	63.481	ENSMAMG00000004532	r3hdm1	99	47.335	Mastacembelus_armatus
ENSCLAG00000007962	R3HDM1	100	61.538	ENSMZEG00005003157	r3hdm1	99	47.059	Maylandia_zebra
ENSCLAG00000007962	R3HDM1	100	76.412	ENSMGAG00000012461	R3HDM1	100	74.233	Meleagris_gallopavo
ENSCLAG00000007962	R3HDM1	100	94.077	ENSMAUG00000010315	R3hdm1	100	94.077	Mesocricetus_auratus
ENSCLAG00000007962	R3HDM1	100	83.972	ENSMICG00000042655	-	100	85.222	Microcebus_murinus
ENSCLAG00000007962	R3HDM1	100	95.267	ENSMICG00000005900	-	100	89.025	Microcebus_murinus
ENSCLAG00000007962	R3HDM1	100	93.728	ENSMOCG00000019833	-	100	93.728	Microtus_ochrogaster
ENSCLAG00000007962	R3HDM1	100	82.051	ENSMODG00000000923	R3HDM1	97	77.915	Monodelphis_domestica
ENSCLAG00000007962	R3HDM1	100	64.626	ENSMALG00000009000	r3hdm1	100	44.979	Monopterus_albus
ENSCLAG00000007962	R3HDM1	100	93.728	MGP_CAROLIEiJ_G0014543	R3hdm1	100	93.728	Mus_caroli
ENSCLAG00000007962	R3HDM1	100	93.728	ENSMUSG00000056211	R3hdm1	100	93.728	Mus_musculus
ENSCLAG00000007962	R3HDM1	100	93.380	MGP_PahariEiJ_G0027779	R3hdm1	100	93.380	Mus_pahari
ENSCLAG00000007962	R3HDM1	100	93.728	MGP_SPRETEiJ_G0015350	R3hdm1	100	93.728	Mus_spretus
ENSCLAG00000007962	R3HDM1	100	90.033	ENSMPUG00000002412	R3HDM1	100	89.710	Mustela_putorius_furo
ENSCLAG00000007962	R3HDM1	100	88.040	ENSMLUG00000013824	R3HDM1	100	87.873	Myotis_lucifugus
ENSCLAG00000007962	R3HDM1	100	93.728	ENSNGAG00000001313	-	100	93.728	Nannospalax_galili
ENSCLAG00000007962	R3HDM1	94	95.861	ENSNLEG00000008622	R3HDM1	100	88.918	Nomascus_leucogenys
ENSCLAG00000007962	R3HDM1	91	74.830	ENSMEUG00000011784	R3HDM1	100	68.732	Notamacropus_eugenii
ENSCLAG00000007962	R3HDM1	100	97.909	ENSODEG00000008607	R3HDM1	100	97.909	Octodon_degus
ENSCLAG00000007962	R3HDM1	80	71.008	ENSONIG00000012017	r3hdm1	98	46.460	Oreochromis_niloticus
ENSCLAG00000007962	R3HDM1	100	84.053	ENSOANG00000007987	R3HDM1	100	77.428	Ornithorhynchus_anatinus
ENSCLAG00000007962	R3HDM1	100	90.698	ENSOCUG00000017366	R3HDM1	98	88.998	Oryctolagus_cuniculus
ENSCLAG00000007962	R3HDM1	100	63.481	ENSORLG00000004297	r3hdm1	99	45.548	Oryzias_latipes
ENSCLAG00000007962	R3HDM1	100	64.505	ENSORLG00020019252	-	93	59.569	Oryzias_latipes_hni
ENSCLAG00000007962	R3HDM1	100	63.481	ENSORLG00015017355	r3hdm1	99	46.161	Oryzias_latipes_hsok
ENSCLAG00000007962	R3HDM1	100	64.000	ENSOMEG00000003882	-	94	57.553	Oryzias_melastigma
ENSCLAG00000007962	R3HDM1	100	89.037	ENSOGAG00000003136	R3HDM1	100	89.094	Otolemur_garnettii
ENSCLAG00000007962	R3HDM1	100	89.369	ENSOARG00000010788	R3HDM1	100	88.742	Ovis_aries
ENSCLAG00000007962	R3HDM1	95	95.887	ENSPPAG00000027858	R3HDM1	100	89.446	Pan_paniscus
ENSCLAG00000007962	R3HDM1	100	95.062	ENSPPRG00000002626	R3HDM1	100	89.358	Panthera_pardus
ENSCLAG00000007962	R3HDM1	100	95.267	ENSPTIG00000016581	R3HDM1	100	89.182	Panthera_tigris_altaica
ENSCLAG00000007962	R3HDM1	95	95.887	ENSPTRG00000012494	R3HDM1	100	89.446	Pan_troglodytes
ENSCLAG00000007962	R3HDM1	94	95.425	ENSPANG00000026448	R3HDM1	100	89.006	Papio_anubis
ENSCLAG00000007962	R3HDM1	100	64.605	ENSPKIG00000011224	R3HDM1	90	62.287	Paramormyrops_kingsleyae
ENSCLAG00000007962	R3HDM1	97	65.493	ENSPKIG00000004328	r3hdm1	91	75.238	Paramormyrops_kingsleyae
ENSCLAG00000007962	R3HDM1	100	79.070	ENSPSIG00000012915	R3HDM1	100	74.386	Pelodiscus_sinensis
ENSCLAG00000007962	R3HDM1	87	55.682	ENSPMGG00000011264	-	91	54.670	Periophthalmus_magnuspinnatus
ENSCLAG00000007962	R3HDM1	100	93.728	ENSPEMG00000015187	R3hdm1	100	93.728	Peromyscus_maniculatus_bairdii
ENSCLAG00000007962	R3HDM1	100	89.273	ENSPCIG00000002491	R3HDM1	100	89.216	Phascolarctos_cinereus
ENSCLAG00000007962	R3HDM1	100	62.542	ENSPFOG00000015036	r3hdm1	99	47.641	Poecilia_formosa
ENSCLAG00000007962	R3HDM1	89	60.579	ENSPLAG00000018042	r3hdm1	94	47.560	Poecilia_latipinna
ENSCLAG00000007962	R3HDM1	89	60.802	ENSPMEG00000023947	r3hdm1	94	47.713	Poecilia_mexicana
ENSCLAG00000007962	R3HDM1	100	63.390	ENSPREG00000007902	r3hdm1	93	60.222	Poecilia_reticulata
ENSCLAG00000007962	R3HDM1	100	87.434	ENSPPYG00000012815	R3HDM1	100	87.610	Pongo_abelii
ENSCLAG00000007962	R3HDM1	100	86.047	ENSPCAG00000006208	R3HDM1	100	76.781	Procavia_capensis
ENSCLAG00000007962	R3HDM1	100	89.712	ENSPCOG00000012698	R3HDM1	100	87.247	Propithecus_coquereli
ENSCLAG00000007962	R3HDM1	100	81.179	ENSPVAG00000006098	R3HDM1	100	81.706	Pteropus_vampyrus
ENSCLAG00000007962	R3HDM1	100	61.538	ENSPNYG00000008701	-	97	60.048	Pundamilia_nyererei
ENSCLAG00000007962	R3HDM1	79	55.459	ENSPNAG00000004162	arpp21	64	42.026	Pygocentrus_nattereri
ENSCLAG00000007962	R3HDM1	88	71.788	ENSPNAG00000013952	r3hdm1	93	71.709	Pygocentrus_nattereri
ENSCLAG00000007962	R3HDM1	76	75.962	ENSPNAG00000005436	R3HDM1	99	75.884	Pygocentrus_nattereri
ENSCLAG00000007962	R3HDM1	100	89.104	ENSRNOG00000004099	R3hdm1	100	89.016	Rattus_norvegicus
ENSCLAG00000007962	R3HDM1	100	88.127	ENSRBIG00000033317	R3HDM1	100	98.893	Rhinopithecus_bieti
ENSCLAG00000007962	R3HDM1	100	89.037	ENSRROG00000034534	R3HDM1	100	88.742	Rhinopithecus_roxellana
ENSCLAG00000007962	R3HDM1	94	96.078	ENSSBOG00000020389	R3HDM1	100	88.830	Saimiri_boliviensis_boliviensis
ENSCLAG00000007962	R3HDM1	100	85.762	ENSSHAG00000016999	R3HDM1	100	79.895	Sarcophilus_harrisii
ENSCLAG00000007962	R3HDM1	100	65.472	ENSSFOG00015019851	-	99	56.199	Scleropages_formosus
ENSCLAG00000007962	R3HDM1	100	69.863	ENSSFOG00015014134	r3hdm1	100	69.903	Scleropages_formosus
ENSCLAG00000007962	R3HDM1	100	61.724	ENSSMAG00000001669	r3hdm1	94	44.793	Scophthalmus_maximus
ENSCLAG00000007962	R3HDM1	100	63.946	ENSSDUG00000010749	r3hdm1	99	46.308	Seriola_dumerili
ENSCLAG00000007962	R3HDM1	100	62.667	ENSSLDG00000004499	r3hdm1	99	45.847	Seriola_lalandi_dorsalis
ENSCLAG00000007962	R3HDM1	100	76.080	ENSSARG00000000352	-	69	80.731	Sorex_araneus
ENSCLAG00000007962	R3HDM1	100	77.815	ENSSPUG00000004167	R3HDM1	100	75.986	Sphenodon_punctatus
ENSCLAG00000007962	R3HDM1	100	64.846	ENSSPAG00000004648	r3hdm1	99	46.991	Stegastes_partitus
ENSCLAG00000007962	R3HDM1	100	94.856	ENSSSCG00000015692	R3HDM1	100	91.747	Sus_scrofa
ENSCLAG00000007962	R3HDM1	100	76.744	ENSTGUG00000011750	R3HDM1	100	69.398	Taeniopygia_guttata
ENSCLAG00000007962	R3HDM1	82	62.712	ENSTRUG00000011654	r3hdm1	94	46.432	Takifugu_rubripes
ENSCLAG00000007962	R3HDM1	80	70.293	ENSTNIG00000010362	r3hdm1	94	45.791	Tetraodon_nigroviridis
ENSCLAG00000007962	R3HDM1	100	83.289	ENSTTRG00000003935	R3HDM1	100	83.377	Tursiops_truncatus
ENSCLAG00000007962	R3HDM1	100	90.033	ENSUAMG00000024806	R3HDM1	99	92.251	Ursus_americanus
ENSCLAG00000007962	R3HDM1	91	96.606	ENSUMAG00000005552	R3HDM1	100	85.714	Ursus_maritimus
ENSCLAG00000007962	R3HDM1	93	84.746	ENSVPAG00000007333	R3HDM1	93	84.746	Vicugna_pacos
ENSCLAG00000007962	R3HDM1	100	94.077	ENSVVUG00000006457	R3HDM1	100	92.179	Vulpes_vulpes
ENSCLAG00000007962	R3HDM1	86	82.898	ENSXETG00000019330	r3hdm1	100	64.591	Xenopus_tropicalis
ENSCLAG00000007962	R3HDM1	83	62.588	ENSXCOG00000017448	r3hdm1	94	49.086	Xiphophorus_couchianus
ENSCLAG00000007962	R3HDM1	100	62.126	ENSXMAG00000007885	r3hdm1	99	46.679	Xiphophorus_maculatus