EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCLAG00000008545 (Gene tree)
Gene ID: 102018768
Gene Symbol: -
Alias: -
Full Name: SRA stem-loop interacting RNA binding protein
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Plus strand
Length: 5100 bases
Position: chrJH721898.1:1556462-1561561
Accession: 102018768
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000012368	RRM_1	PF00076.22	1.1e-12	1	1
ENSCLAP00000012367	RRM_1	PF00076.22	1.1e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000012511	-	318	-	ENSCLAP00000012368	106 (aa)	-	-
ENSCLAT00000012510	-	423	XM_005390211	ENSCLAP00000012367	111 (aa)	XP_005390268	UPI00038EAA5C

Gene Model

Click here to download ENSCLAG00000008545's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000008545's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCLAG00000008545	-	92	31.868	ENSCLAG00000009221	DAZAP1	90	33.846

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000008545	-	92	71.569	ENSBTAG00000050457	-	100	71.569	Bos_taurus
ENSCLAG00000008545	-	90	80.000	ENSBTAG00000008135	SLIRP	100	80.180	Bos_taurus
ENSCLAG00000008545	-	90	72.000	ENSCAFG00000017230	SLIRP	100	72.973	Canis_familiaris
ENSCLAG00000008545	-	90	72.000	ENSCAFG00020000852	-	100	72.973	Canis_lupus_dingo
ENSCLAG00000008545	-	100	73.874	ENSCHIG00000002964	-	100	73.874	Capra_hircus
ENSCLAG00000008545	-	100	78.378	ENSCHIG00000019077	-	100	78.378	Capra_hircus
ENSCLAG00000008545	-	100	83.784	ENSCPOG00000001500	-	100	83.784	Cavia_porcellus
ENSCLAG00000008545	-	80	59.551	ENSDNOG00000041397	-	81	59.551	Dasypus_novemcinctus
ENSCLAG00000008545	-	100	79.279	ENSECAG00000000712	SLIRP	100	79.279	Equus_caballus
ENSCLAG00000008545	-	89	79.798	ENSJJAG00000018723	-	100	78.378	Jaculus_jaculus
ENSCLAG00000008545	-	100	71.171	MGP_PahariEiJ_G0029754	-	100	71.171	Mus_pahari
ENSCLAG00000008545	-	90	77.000	ENSMLUG00000022403	-	100	75.676	Myotis_lucifugus
ENSCLAG00000008545	-	100	72.072	ENSOPRG00000007560	-	100	72.072	Ochotona_princeps
ENSCLAG00000008545	-	100	78.378	ENSOCUG00000009713	-	100	78.378	Oryctolagus_cuniculus
ENSCLAG00000008545	-	90	64.000	ENSOGAG00000027580	-	99	63.964	Otolemur_garnettii
ENSCLAG00000008545	-	90	78.000	ENSOARG00000002642	SLIRP	100	79.279	Ovis_aries
ENSCLAG00000008545	-	100	63.964	ENSOARG00000016139	-	100	63.964	Ovis_aries
ENSCLAG00000008545	-	86	61.458	ENSPCAG00000004290	-	100	61.261	Procavia_capensis
ENSCLAG00000008545	-	70	71.795	ENSPVAG00000006420	-	70	71.795	Pteropus_vampyrus
ENSCLAG00000008545	-	100	71.171	ENSRNOG00000012314	Slirp	100	71.171	Rattus_norvegicus
ENSCLAG00000008545	-	100	75.676	ENSTBEG00000013979	-	100	75.676	Tupaia_belangeri
ENSCLAG00000008545	-	70	75.641	ENSTTRG00000009328	-	100	61.261	Tursiops_truncatus