EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCLAG00000008664 (Gene tree)
Gene ID: -
Gene Symbol: TRUB1
Alias: PUS4
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Plus strand
Length: 37269 bases
Position: chrJH721891.1:19840662-19877930
Accession: 102020477
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000012527	TruB_N	PF01509.18	2.9e-45	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000012673	TRUB1-201	2506	XM_005387841	ENSCLAP00000012527	244 (aa)	XP_005387898	-

Gene Model

Click here to download ENSCLAG00000008664's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000008664's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000008664	TRUB1	100	88.980	ENSG00000165832	TRUB1	70	88.980	Homo_sapiens
ENSCLAG00000008664	TRUB1	75	65.385	ENSAPOG00000020565	trub1	67	65.027	Acanthochromis_polyacanthus
ENSCLAG00000008664	TRUB1	95	90.517	ENSAMEG00000014931	TRUB1	70	89.388	Ailuropoda_melanoleuca
ENSCLAG00000008664	TRUB1	75	57.923	ENSACIG00000003060	trub1	61	57.923	Amphilophus_citrinellus
ENSCLAG00000008664	TRUB1	75	64.835	ENSAOCG00000017188	trub1	71	62.371	Amphiprion_ocellaris
ENSCLAG00000008664	TRUB1	75	64.481	ENSAPEG00000015209	trub1	67	64.481	Amphiprion_percula
ENSCLAG00000008664	TRUB1	75	66.484	ENSATEG00000023291	trub1	65	66.484	Anabas_testudineus
ENSCLAG00000008664	TRUB1	75	74.457	ENSAPLG00000006808	TRUB1	67	73.797	Anas_platyrhynchos
ENSCLAG00000008664	TRUB1	76	68.280	ENSACAG00000009282	TRUB1	67	68.280	Anolis_carolinensis
ENSCLAG00000008664	TRUB1	95	91.775	ENSANAG00000022870	TRUB1	70	89.837	Aotus_nancymaae
ENSCLAG00000008664	TRUB1	75	64.481	ENSACLG00000000823	trub1	66	64.481	Astatotilapia_calliptera
ENSCLAG00000008664	TRUB1	75	65.574	ENSAMXG00000015845	trub1	61	65.574	Astyanax_mexicanus
ENSCLAG00000008664	TRUB1	97	88.608	ENSBTAG00000012955	TRUB1	70	87.449	Bos_taurus
ENSCLAG00000008664	TRUB1	100	89.024	ENSCJAG00000047815	TRUB1	70	89.024	Callithrix_jacchus
ENSCLAG00000008664	TRUB1	100	88.163	ENSCAFG00000011688	TRUB1	70	88.163	Canis_familiaris
ENSCLAG00000008664	TRUB1	100	88.163	ENSCAFG00020013237	TRUB1	70	88.163	Canis_lupus_dingo
ENSCLAG00000008664	TRUB1	97	87.764	ENSCHIG00000020884	TRUB1	70	86.992	Capra_hircus
ENSCLAG00000008664	TRUB1	100	84.146	ENSTSYG00000000446	TRUB1	70	85.772	Carlito_syrichta
ENSCLAG00000008664	TRUB1	61	95.973	ENSCAPG00000017088	TRUB1	63	95.973	Cavia_aperea
ENSCLAG00000008664	TRUB1	100	83.197	ENSCPOG00000030129	-	85	81.148	Cavia_porcellus
ENSCLAG00000008664	TRUB1	100	90.164	ENSCPOG00000040236	-	100	90.164	Cavia_porcellus
ENSCLAG00000008664	TRUB1	95	90.948	ENSCCAG00000028842	TRUB1	70	88.211	Cebus_capucinus
ENSCLAG00000008664	TRUB1	100	89.388	ENSCATG00000033431	TRUB1	70	89.388	Cercocebus_atys
ENSCLAG00000008664	TRUB1	100	89.388	ENSCSAG00000004891	TRUB1	70	89.388	Chlorocebus_sabaeus
ENSCLAG00000008664	TRUB1	100	78.367	ENSCHOG00000011931	TRUB1	72	78.367	Choloepus_hoffmanni
ENSCLAG00000008664	TRUB1	75	77.174	ENSCPBG00000003051	TRUB1	63	77.174	Chrysemys_picta_bellii
ENSCLAG00000008664	TRUB1	100	89.388	ENSCANG00000029445	TRUB1	70	89.388	Colobus_angolensis_palliatus
ENSCLAG00000008664	TRUB1	75	75.410	ENSCGRG00001016772	-	55	75.130	Cricetulus_griseus_chok1gshd
ENSCLAG00000008664	TRUB1	72	76.705	ENSCGRG00001010322	-	51	76.562	Cricetulus_griseus_chok1gshd
ENSCLAG00000008664	TRUB1	72	90.341	ENSCGRG00000010806	Trub1	59	88.601	Cricetulus_griseus_crigri
ENSCLAG00000008664	TRUB1	80	61.340	ENSCSEG00000011261	trub1	63	61.340	Cynoglossus_semilaevis
ENSCLAG00000008664	TRUB1	75	65.385	ENSCVAG00000008791	trub1	56	65.385	Cyprinodon_variegatus
ENSCLAG00000008664	TRUB1	75	66.120	ENSDARG00000053805	trub1	76	68.627	Danio_rerio
ENSCLAG00000008664	TRUB1	95	84.416	ENSDNOG00000001069	TRUB1	70	83.333	Dasypus_novemcinctus
ENSCLAG00000008664	TRUB1	98	88.703	ENSDORG00000010431	Trub1	68	88.285	Dipodomys_ordii
ENSCLAG00000008664	TRUB1	58	86.620	ENSETEG00000009183	TRUB1	57	73.529	Echinops_telfairi
ENSCLAG00000008664	TRUB1	95	90.517	ENSEASG00005014739	TRUB1	70	89.388	Equus_asinus_asinus
ENSCLAG00000008664	TRUB1	95	90.517	ENSECAG00000007177	TRUB1	70	89.388	Equus_caballus
ENSCLAG00000008664	TRUB1	99	70.683	ENSEEUG00000013993	TRUB1	69	72.289	Erinaceus_europaeus
ENSCLAG00000008664	TRUB1	75	67.760	ENSELUG00000000502	trub1	64	67.760	Esox_lucius
ENSCLAG00000008664	TRUB1	81	93.401	ENSFCAG00000031927	TRUB1	70	87.705	Felis_catus
ENSCLAG00000008664	TRUB1	63	74.510	ENSFALG00000002232	TRUB1	59	74.510	Ficedula_albicollis
ENSCLAG00000008664	TRUB1	100	90.574	ENSFDAG00000008140	TRUB1	100	90.574	Fukomys_damarensis
ENSCLAG00000008664	TRUB1	75	65.385	ENSFHEG00000004016	trub1	63	65.385	Fundulus_heteroclitus
ENSCLAG00000008664	TRUB1	75	73.370	ENSGALG00000009091	TRUB1	80	73.370	Gallus_gallus
ENSCLAG00000008664	TRUB1	75	63.043	ENSGAFG00000009193	trub1	65	63.043	Gambusia_affinis
ENSCLAG00000008664	TRUB1	54	64.394	ENSGACG00000015387	trub1	65	64.394	Gasterosteus_aculeatus
ENSCLAG00000008664	TRUB1	86	71.090	ENSGAGG00000009758	TRUB1	56	75.000	Gopherus_agassizii
ENSCLAG00000008664	TRUB1	100	88.980	ENSGGOG00000004583	TRUB1	70	88.980	Gorilla_gorilla
ENSCLAG00000008664	TRUB1	81	61.616	ENSHBUG00000016787	trub1	71	61.735	Haplochromis_burtoni
ENSCLAG00000008664	TRUB1	100	91.393	ENSHGLG00000015314	TRUB1	70	91.393	Heterocephalus_glaber_female
ENSCLAG00000008664	TRUB1	100	89.344	ENSHGLG00100009183	TRUB1	100	88.115	Heterocephalus_glaber_male
ENSCLAG00000008664	TRUB1	80	62.564	ENSHCOG00000017877	trub1	71	62.564	Hippocampus_comes
ENSCLAG00000008664	TRUB1	75	67.760	ENSIPUG00000017559	trub1	64	67.760	Ictalurus_punctatus
ENSCLAG00000008664	TRUB1	81	94.416	ENSSTOG00000003641	TRUB1	69	84.898	Ictidomys_tridecemlineatus
ENSCLAG00000008664	TRUB1	80	92.821	ENSJJAG00000011800	Trub1	69	80.816	Jaculus_jaculus
ENSCLAG00000008664	TRUB1	75	65.027	ENSKMAG00000006232	trub1	66	65.027	Kryptolebias_marmoratus
ENSCLAG00000008664	TRUB1	75	65.574	ENSLBEG00000026722	trub1	64	65.574	Labrus_bergylta
ENSCLAG00000008664	TRUB1	77	74.211	ENSLACG00000014885	TRUB1	63	74.211	Latimeria_chalumnae
ENSCLAG00000008664	TRUB1	80	68.718	ENSLOCG00000012979	trub1	66	68.718	Lepisosteus_oculatus
ENSCLAG00000008664	TRUB1	100	78.455	ENSLAFG00000015452	TRUB1	68	78.455	Loxodonta_africana
ENSCLAG00000008664	TRUB1	100	89.388	ENSMFAG00000031767	TRUB1	70	89.388	Macaca_fascicularis
ENSCLAG00000008664	TRUB1	100	89.388	ENSMMUG00000001902	TRUB1	70	89.388	Macaca_mulatta
ENSCLAG00000008664	TRUB1	100	83.673	ENSMNEG00000044646	TRUB1	69	83.673	Macaca_nemestrina
ENSCLAG00000008664	TRUB1	100	89.388	ENSMLEG00000042655	TRUB1	70	89.388	Mandrillus_leucophaeus
ENSCLAG00000008664	TRUB1	75	64.481	ENSMZEG00005024095	trub1	66	64.481	Maylandia_zebra
ENSCLAG00000008664	TRUB1	75	72.826	ENSMGAG00000011135	TRUB1	63	72.826	Meleagris_gallopavo
ENSCLAG00000008664	TRUB1	72	86.932	ENSMAUG00000011101	Trub1	57	86.224	Mesocricetus_auratus
ENSCLAG00000008664	TRUB1	100	89.344	ENSMICG00000016324	TRUB1	70	89.344	Microcebus_murinus
ENSCLAG00000008664	TRUB1	100	77.869	ENSMOCG00000017759	Trub1	68	77.869	Microtus_ochrogaster
ENSCLAG00000008664	TRUB1	75	87.363	ENSMODG00000009676	TRUB1	52	85.185	Monodelphis_domestica
ENSCLAG00000008664	TRUB1	100	79.508	MGP_CAROLIEiJ_G0023100	Trub1	94	80.328	Mus_caroli
ENSCLAG00000008664	TRUB1	100	78.279	ENSMUSG00000025086	Trub1	94	78.367	Mus_musculus
ENSCLAG00000008664	TRUB1	100	79.508	MGP_PahariEiJ_G0014588	Trub1	69	79.592	Mus_pahari
ENSCLAG00000008664	TRUB1	100	78.279	MGP_SPRETEiJ_G0024021	Trub1	94	78.367	Mus_spretus
ENSCLAG00000008664	TRUB1	95	90.517	ENSMPUG00000003556	TRUB1	70	89.388	Mustela_putorius_furo
ENSCLAG00000008664	TRUB1	90	89.954	ENSMLUG00000017686	TRUB1	69	84.146	Myotis_lucifugus
ENSCLAG00000008664	TRUB1	100	84.426	ENSNGAG00000018682	Trub1	70	84.426	Nannospalax_galili
ENSCLAG00000008664	TRUB1	75	64.481	ENSNBRG00000023393	trub1	65	64.481	Neolamprologus_brichardi
ENSCLAG00000008664	TRUB1	95	89.655	ENSNLEG00000016345	TRUB1	70	88.163	Nomascus_leucogenys
ENSCLAG00000008664	TRUB1	75	87.363	ENSMEUG00000006603	TRUB1	70	85.185	Notamacropus_eugenii
ENSCLAG00000008664	TRUB1	81	86.294	ENSOPRG00000009371	TRUB1	69	77.459	Ochotona_princeps
ENSCLAG00000008664	TRUB1	100	88.934	ENSODEG00000010854	TRUB1	70	88.934	Octodon_degus
ENSCLAG00000008664	TRUB1	75	63.934	ENSONIG00000007249	trub1	67	63.934	Oreochromis_niloticus
ENSCLAG00000008664	TRUB1	76	79.032	ENSOANG00000001556	TRUB1	64	75.897	Ornithorhynchus_anatinus
ENSCLAG00000008664	TRUB1	81	88.832	ENSOCUG00000009456	TRUB1	65	85.841	Oryctolagus_cuniculus
ENSCLAG00000008664	TRUB1	75	66.484	ENSORLG00000029719	trub1	65	66.484	Oryzias_latipes
ENSCLAG00000008664	TRUB1	75	65.934	ENSORLG00020016767	trub1	64	65.934	Oryzias_latipes_hni
ENSCLAG00000008664	TRUB1	75	65.934	ENSORLG00015014728	trub1	65	65.934	Oryzias_latipes_hsok
ENSCLAG00000008664	TRUB1	75	67.582	ENSOMEG00000014556	trub1	64	67.582	Oryzias_melastigma
ENSCLAG00000008664	TRUB1	99	90.947	ENSOGAG00000015895	TRUB1	69	90.947	Otolemur_garnettii
ENSCLAG00000008664	TRUB1	78	91.327	ENSOARG00000015591	TRUB1	70	82.800	Ovis_aries
ENSCLAG00000008664	TRUB1	100	89.388	ENSPPAG00000043645	TRUB1	70	89.388	Pan_paniscus
ENSCLAG00000008664	TRUB1	95	87.931	ENSPPRG00000007096	TRUB1	70	87.295	Panthera_pardus
ENSCLAG00000008664	TRUB1	95	88.362	ENSPTIG00000006378	TRUB1	70	87.705	Panthera_tigris_altaica
ENSCLAG00000008664	TRUB1	100	89.388	ENSPTRG00000002964	TRUB1	70	89.388	Pan_troglodytes
ENSCLAG00000008664	TRUB1	100	88.980	ENSPANG00000020712	TRUB1	70	88.980	Papio_anubis
ENSCLAG00000008664	TRUB1	75	75.543	ENSPSIG00000012877	TRUB1	63	75.543	Pelodiscus_sinensis
ENSCLAG00000008664	TRUB1	75	62.842	ENSPMGG00000000075	trub1	66	62.842	Periophthalmus_magnuspinnatus
ENSCLAG00000008664	TRUB1	80	86.224	ENSPEMG00000011156	Trub1	69	74.590	Peromyscus_maniculatus_bairdii
ENSCLAG00000008664	TRUB1	75	87.363	ENSPCIG00000009729	TRUB1	54	85.638	Phascolarctos_cinereus
ENSCLAG00000008664	TRUB1	75	64.481	ENSPFOG00000009950	trub1	67	64.481	Poecilia_formosa
ENSCLAG00000008664	TRUB1	75	64.481	ENSPLAG00000013855	trub1	64	64.481	Poecilia_latipinna
ENSCLAG00000008664	TRUB1	75	64.481	ENSPMEG00000009064	trub1	66	64.481	Poecilia_mexicana
ENSCLAG00000008664	TRUB1	75	65.027	ENSPREG00000003343	trub1	66	65.027	Poecilia_reticulata
ENSCLAG00000008664	TRUB1	95	90.086	ENSPPYG00000002676	TRUB1	70	88.571	Pongo_abelii
ENSCLAG00000008664	TRUB1	100	79.032	ENSPCAG00000008427	TRUB1	70	78.629	Procavia_capensis
ENSCLAG00000008664	TRUB1	100	82.787	ENSPCOG00000024360	TRUB1	68	82.787	Propithecus_coquereli
ENSCLAG00000008664	TRUB1	100	88.115	ENSPVAG00000007575	TRUB1	93	88.115	Pteropus_vampyrus
ENSCLAG00000008664	TRUB1	75	64.481	ENSPNYG00000018614	trub1	66	64.481	Pundamilia_nyererei
ENSCLAG00000008664	TRUB1	75	55.495	ENSPNAG00000006881	trub1	55	55.495	Pygocentrus_nattereri
ENSCLAG00000008664	TRUB1	100	79.098	ENSRNOG00000017321	Trub1	69	80.328	Rattus_norvegicus
ENSCLAG00000008664	TRUB1	97	78.903	ENSRBIG00000033423	TRUB1	67	78.903	Rhinopithecus_bieti
ENSCLAG00000008664	TRUB1	100	89.388	ENSRROG00000033902	TRUB1	70	89.388	Rhinopithecus_roxellana
ENSCLAG00000008664	TRUB1	95	91.379	ENSSBOG00000024237	TRUB1	70	88.618	Saimiri_boliviensis_boliviensis
ENSCLAG00000008664	TRUB1	61	86.000	ENSSHAG00000009346	TRUB1	50	86.000	Sarcophilus_harrisii
ENSCLAG00000008664	TRUB1	75	65.574	ENSSFOG00015022124	trub1	62	65.574	Scleropages_formosus
ENSCLAG00000008664	TRUB1	75	65.574	ENSSMAG00000001020	trub1	65	65.574	Scophthalmus_maximus
ENSCLAG00000008664	TRUB1	73	66.102	ENSSDUG00000016414	trub1	66	66.120	Seriola_dumerili
ENSCLAG00000008664	TRUB1	73	66.667	ENSSLDG00000015486	trub1	66	66.667	Seriola_lalandi_dorsalis
ENSCLAG00000008664	TRUB1	78	74.869	ENSSPUG00000001642	TRUB1	66	74.869	Sphenodon_punctatus
ENSCLAG00000008664	TRUB1	75	65.574	ENSSPAG00000001217	trub1	66	65.574	Stegastes_partitus
ENSCLAG00000008664	TRUB1	100	84.082	ENSSSCG00000010653	TRUB1	71	84.082	Sus_scrofa
ENSCLAG00000008664	TRUB1	75	73.626	ENSTGUG00000010971	TRUB1	65	73.370	Taeniopygia_guttata
ENSCLAG00000008664	TRUB1	95	87.069	ENSTTRG00000005767	TRUB1	93	86.939	Tursiops_truncatus
ENSCLAG00000008664	TRUB1	95	90.558	ENSUAMG00000024876	TRUB1	70	89.796	Ursus_americanus
ENSCLAG00000008664	TRUB1	78	96.335	ENSUMAG00000002411	TRUB1	91	84.898	Ursus_maritimus
ENSCLAG00000008664	TRUB1	100	88.571	ENSVPAG00000005507	TRUB1	70	88.571	Vicugna_pacos
ENSCLAG00000008664	TRUB1	100	85.714	ENSVVUG00000010085	TRUB1	58	86.939	Vulpes_vulpes
ENSCLAG00000008664	TRUB1	75	68.478	ENSXETG00000023828	trub1	66	68.478	Xenopus_tropicalis
ENSCLAG00000008664	TRUB1	75	63.934	ENSXCOG00000017847	trub1	65	63.934	Xiphophorus_couchianus
ENSCLAG00000008664	TRUB1	75	63.934	ENSXMAG00000014701	trub1	66	63.934	Xiphophorus_maculatus