EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCLAG00000010424 (Gene tree)
Gene ID: 102003986
Gene Symbol: A1CF
Alias: ACF|ACF64|ACF65|APOBEC1CF|ASP
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Minus strand
Length: 85233 bases
Position: chrJH721885.1:5992538-6077770
Accession: 102003986
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000015124	DND1_DSRM	PF14709.7	3e-24	1	1
ENSCLAP00000015124	RRM_1	PF00076.22	1.6e-39	1	3
ENSCLAP00000015124	RRM_1	PF00076.22	1.6e-39	2	3
ENSCLAP00000015124	RRM_1	PF00076.22	1.6e-39	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000015284	A1CF-201	3856	XM_005385900	ENSCLAP00000015124	596 (aa)	XP_005385957	UPI00038F016C

Gene Model

Click here to download ENSCLAG00000010424's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000010424's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCLAG00000010424	A1CF	85	72.910	ENSCLAG00000011886	-	86	72.910
ENSCLAG00000010424	A1CF	88	69.427	ENSCLAG00000005846	-	99	69.427
ENSCLAG00000010424	A1CF	51	52.751	ENSCLAG00000011851	SYNCRIP	70	45.288
ENSCLAG00000010424	A1CF	74	58.889	ENSCLAG00000001684	RBM47	87	68.116

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000010424	A1CF	100	95.973	ENSG00000148584	A1CF	100	99.005	Homo_sapiens
ENSCLAG00000010424	A1CF	100	73.179	ENSAPOG00000008259	a1cf	100	73.013	Acanthochromis_polyacanthus
ENSCLAG00000010424	A1CF	100	93.792	ENSAMEG00000000523	A1CF	100	94.295	Ailuropoda_melanoleuca
ENSCLAG00000010424	A1CF	100	74.551	ENSACIG00000008632	a1cf	100	75.856	Amphilophus_citrinellus
ENSCLAG00000010424	A1CF	100	73.977	ENSAOCG00000023744	a1cf	95	83.430	Amphiprion_ocellaris
ENSCLAG00000010424	A1CF	100	74.959	ENSAPEG00000009537	a1cf	100	75.123	Amphiprion_percula
ENSCLAG00000010424	A1CF	100	74.593	ENSATEG00000013720	a1cf	100	75.733	Anabas_testudineus
ENSCLAG00000010424	A1CF	100	87.605	ENSAPLG00000002964	A1CF	100	87.605	Anas_platyrhynchos
ENSCLAG00000010424	A1CF	100	83.585	ENSACAG00000015269	A1CF	100	83.082	Anolis_carolinensis
ENSCLAG00000010424	A1CF	100	94.799	ENSANAG00000019974	A1CF	100	94.799	Aotus_nancymaae
ENSCLAG00000010424	A1CF	100	72.549	ENSACLG00000017428	a1cf	100	74.020	Astatotilapia_calliptera
ENSCLAG00000010424	A1CF	100	74.050	ENSAMXG00000018180	a1cf	100	74.545	Astyanax_mexicanus
ENSCLAG00000010424	A1CF	100	94.631	ENSBTAG00000021195	A1CF	100	94.698	Bos_taurus
ENSCLAG00000010424	A1CF	100	96.309	ENSCJAG00000005045	A1CF	100	96.309	Callithrix_jacchus
ENSCLAG00000010424	A1CF	100	93.792	ENSCAFG00000015581	A1CF	100	94.295	Canis_familiaris
ENSCLAG00000010424	A1CF	100	93.792	ENSCAFG00020026421	A1CF	100	94.295	Canis_lupus_dingo
ENSCLAG00000010424	A1CF	100	94.966	ENSCHIG00000020411	A1CF	100	94.966	Capra_hircus
ENSCLAG00000010424	A1CF	95	94.336	ENSTSYG00000001755	A1CF	100	93.606	Carlito_syrichta
ENSCLAG00000010424	A1CF	100	83.333	ENSCAPG00000017386	A1CF	100	83.333	Cavia_aperea
ENSCLAG00000010424	A1CF	100	97.483	ENSCPOG00000009807	A1CF	100	97.483	Cavia_porcellus
ENSCLAG00000010424	A1CF	100	95.973	ENSCCAG00000018168	A1CF	100	95.973	Cebus_capucinus
ENSCLAG00000010424	A1CF	100	94.295	ENSCATG00000043715	A1CF	100	94.631	Cercocebus_atys
ENSCLAG00000010424	A1CF	100	96.141	ENSCSAG00000007032	A1CF	100	96.141	Chlorocebus_sabaeus
ENSCLAG00000010424	A1CF	98	89.340	ENSCHOG00000009089	A1CF	98	89.509	Choloepus_hoffmanni
ENSCLAG00000010424	A1CF	100	87.270	ENSCPBG00000026464	A1CF	100	87.270	Chrysemys_picta_bellii
ENSCLAG00000010424	A1CF	100	96.141	ENSCANG00000038032	A1CF	100	96.141	Colobus_angolensis_palliatus
ENSCLAG00000010424	A1CF	100	93.792	ENSCGRG00001017413	A1cf	100	93.792	Cricetulus_griseus_chok1gshd
ENSCLAG00000010424	A1CF	100	93.121	ENSCGRG00000017332	A1cf	100	93.121	Cricetulus_griseus_crigri
ENSCLAG00000010424	A1CF	100	74.711	ENSCSEG00000002361	a1cf	100	76.033	Cynoglossus_semilaevis
ENSCLAG00000010424	A1CF	100	73.290	ENSCVAG00000010520	a1cf	100	75.244	Cyprinodon_variegatus
ENSCLAG00000010424	A1CF	100	76.872	ENSDARG00000002968	a1cf	100	78.369	Danio_rerio
ENSCLAG00000010424	A1CF	100	93.624	ENSDNOG00000002829	A1CF	100	93.624	Dasypus_novemcinctus
ENSCLAG00000010424	A1CF	81	92.754	ENSETEG00000012527	A1CF	81	92.754	Echinops_telfairi
ENSCLAG00000010424	A1CF	100	95.318	ENSEASG00005012924	A1CF	100	95.485	Equus_asinus_asinus
ENSCLAG00000010424	A1CF	100	94.816	ENSECAG00000010424	A1CF	100	94.983	Equus_caballus
ENSCLAG00000010424	A1CF	79	80.342	ENSEEUG00000000013	A1CF	99	77.801	Erinaceus_europaeus
ENSCLAG00000010424	A1CF	100	78.536	ENSELUG00000003159	a1cf	100	79.368	Esox_lucius
ENSCLAG00000010424	A1CF	100	91.107	ENSFCAG00000011179	A1CF	100	91.779	Felis_catus
ENSCLAG00000010424	A1CF	100	85.595	ENSFALG00000013183	A1CF	100	85.595	Ficedula_albicollis
ENSCLAG00000010424	A1CF	100	95.302	ENSFDAG00000019371	A1CF	100	95.302	Fukomys_damarensis
ENSCLAG00000010424	A1CF	100	68.567	ENSFHEG00000019652	a1cf	96	81.250	Fundulus_heteroclitus
ENSCLAG00000010424	A1CF	100	71.287	ENSGMOG00000018943	a1cf	100	71.499	Gadus_morhua
ENSCLAG00000010424	A1CF	95	87.986	ENSGALG00000003765	A1CF	97	87.986	Gallus_gallus
ENSCLAG00000010424	A1CF	100	69.079	ENSGAFG00000014868	a1cf	100	70.066	Gambusia_affinis
ENSCLAG00000010424	A1CF	100	74.178	ENSGACG00000010241	a1cf	100	74.178	Gasterosteus_aculeatus
ENSCLAG00000010424	A1CF	94	87.589	ENSGAGG00000016508	A1CF	97	87.589	Gopherus_agassizii
ENSCLAG00000010424	A1CF	100	95.973	ENSGGOG00000009670	A1CF	100	95.973	Gorilla_gorilla
ENSCLAG00000010424	A1CF	100	73.409	ENSHBUG00000021959	a1cf	100	75.367	Haplochromis_burtoni
ENSCLAG00000010424	A1CF	100	97.148	ENSHGLG00000008955	A1CF	100	97.148	Heterocephalus_glaber_female
ENSCLAG00000010424	A1CF	100	96.477	ENSHGLG00100000518	A1CF	100	96.477	Heterocephalus_glaber_male
ENSCLAG00000010424	A1CF	95	71.134	ENSHCOG00000017669	a1cf	100	72.033	Hippocampus_comes
ENSCLAG00000010424	A1CF	89	82.649	ENSIPUG00000010367	a1cf	96	82.649	Ictalurus_punctatus
ENSCLAG00000010424	A1CF	100	76.423	ENSKMAG00000006568	a1cf	100	77.236	Kryptolebias_marmoratus
ENSCLAG00000010424	A1CF	99	74.715	ENSLBEG00000020994	a1cf	98	76.026	Labrus_bergylta
ENSCLAG00000010424	A1CF	100	80.968	ENSLACG00000008061	A1CF	100	80.968	Latimeria_chalumnae
ENSCLAG00000010424	A1CF	100	81.333	ENSLOCG00000006302	a1cf	100	81.333	Lepisosteus_oculatus
ENSCLAG00000010424	A1CF	100	93.792	ENSLAFG00000015462	A1CF	100	93.792	Loxodonta_africana
ENSCLAG00000010424	A1CF	100	94.631	ENSMFAG00000035948	A1CF	100	94.966	Macaca_fascicularis
ENSCLAG00000010424	A1CF	100	94.631	ENSMMUG00000007077	A1CF	100	94.966	Macaca_mulatta
ENSCLAG00000010424	A1CF	100	94.295	ENSMNEG00000031454	A1CF	100	94.631	Macaca_nemestrina
ENSCLAG00000010424	A1CF	100	95.973	ENSMLEG00000037223	A1CF	100	95.973	Mandrillus_leucophaeus
ENSCLAG00000010424	A1CF	100	73.650	ENSMAMG00000010402	a1cf	100	75.327	Mastacembelus_armatus
ENSCLAG00000010424	A1CF	100	75.374	ENSMZEG00005013245	a1cf	100	76.206	Maylandia_zebra
ENSCLAG00000010424	A1CF	100	87.960	ENSMGAG00000001507	A1CF	100	87.960	Meleagris_gallopavo
ENSCLAG00000010424	A1CF	100	93.456	ENSMAUG00000007422	A1cf	100	93.456	Mesocricetus_auratus
ENSCLAG00000010424	A1CF	100	92.654	ENSMICG00000003377	A1CF	100	92.988	Microcebus_murinus
ENSCLAG00000010424	A1CF	100	93.289	ENSMOCG00000021536	A1cf	100	93.289	Microtus_ochrogaster
ENSCLAG00000010424	A1CF	100	67.430	ENSMMOG00000009422	a1cf	100	68.740	Mola_mola
ENSCLAG00000010424	A1CF	92	88.686	ENSMODG00000016478	A1CF	97	90.189	Monodelphis_domestica
ENSCLAG00000010424	A1CF	100	71.714	ENSMALG00000012992	a1cf	100	71.215	Monopterus_albus
ENSCLAG00000010424	A1CF	100	93.289	MGP_CAROLIEiJ_G0022873	A1cf	100	93.289	Mus_caroli
ENSCLAG00000010424	A1CF	100	93.289	ENSMUSG00000052595	A1cf	99	95.000	Mus_musculus
ENSCLAG00000010424	A1CF	100	92.450	MGP_PahariEiJ_G0014366	A1cf	100	92.450	Mus_pahari
ENSCLAG00000010424	A1CF	100	92.785	MGP_SPRETEiJ_G0023792	A1cf	100	92.785	Mus_spretus
ENSCLAG00000010424	A1CF	100	89.094	ENSMPUG00000016971	A1CF	100	89.262	Mustela_putorius_furo
ENSCLAG00000010424	A1CF	100	93.624	ENSMLUG00000016071	A1CF	100	93.624	Myotis_lucifugus
ENSCLAG00000010424	A1CF	100	94.463	ENSNGAG00000015136	A1cf	100	94.463	Nannospalax_galili
ENSCLAG00000010424	A1CF	100	73.736	ENSNBRG00000001712	a1cf	100	75.693	Neolamprologus_brichardi
ENSCLAG00000010424	A1CF	100	96.812	ENSNLEG00000012028	A1CF	100	96.812	Nomascus_leucogenys
ENSCLAG00000010424	A1CF	94	88.121	ENSMEUG00000015909	A1CF	100	88.475	Notamacropus_eugenii
ENSCLAG00000010424	A1CF	88	84.411	ENSOPRG00000010667	A1CF	97	84.369	Ochotona_princeps
ENSCLAG00000010424	A1CF	100	74.225	ENSONIG00000019105	a1cf	100	75.367	Oreochromis_niloticus
ENSCLAG00000010424	A1CF	78	87.821	ENSOANG00000007360	A1CF	99	87.821	Ornithorhynchus_anatinus
ENSCLAG00000010424	A1CF	100	92.462	ENSOCUG00000011587	A1CF	100	93.132	Oryctolagus_cuniculus
ENSCLAG00000010424	A1CF	100	74.346	ENSORLG00000013342	a1cf	100	73.786	Oryzias_latipes
ENSCLAG00000010424	A1CF	100	75.041	ENSORLG00020000586	a1cf	100	75.041	Oryzias_latipes_hni
ENSCLAG00000010424	A1CF	100	75.204	ENSORLG00015018569	a1cf	100	75.204	Oryzias_latipes_hsok
ENSCLAG00000010424	A1CF	100	74.304	ENSOMEG00000013531	a1cf	100	74.141	Oryzias_melastigma
ENSCLAG00000010424	A1CF	100	93.624	ENSOGAG00000012884	A1CF	100	94.295	Otolemur_garnettii
ENSCLAG00000010424	A1CF	100	95.134	ENSOARG00000013695	A1CF	100	95.134	Ovis_aries
ENSCLAG00000010424	A1CF	97	94.118	ENSPPAG00000028115	A1CF	100	97.374	Pan_paniscus
ENSCLAG00000010424	A1CF	100	92.785	ENSPPRG00000012180	A1CF	100	93.456	Panthera_pardus
ENSCLAG00000010424	A1CF	100	92.785	ENSPTIG00000021223	A1CF	100	93.456	Panthera_tigris_altaica
ENSCLAG00000010424	A1CF	100	95.805	ENSPTRG00000002508	A1CF	100	95.805	Pan_troglodytes
ENSCLAG00000010424	A1CF	100	94.631	ENSPANG00000021988	A1CF	100	94.966	Papio_anubis
ENSCLAG00000010424	A1CF	100	79.700	ENSPKIG00000025176	a1cf	100	79.700	Paramormyrops_kingsleyae
ENSCLAG00000010424	A1CF	100	85.762	ENSPSIG00000010318	A1CF	100	85.762	Pelodiscus_sinensis
ENSCLAG00000010424	A1CF	88	70.722	ENSPMGG00000013359	a1cf	99	67.121	Periophthalmus_magnuspinnatus
ENSCLAG00000010424	A1CF	100	93.792	ENSPEMG00000015021	A1cf	100	93.792	Peromyscus_maniculatus_bairdii
ENSCLAG00000010424	A1CF	100	87.772	ENSPCIG00000002175	A1CF	100	88.107	Phascolarctos_cinereus
ENSCLAG00000010424	A1CF	100	74.756	ENSPFOG00000006683	a1cf	100	76.710	Poecilia_formosa
ENSCLAG00000010424	A1CF	100	74.593	ENSPFOG00000007437	-	100	76.547	Poecilia_formosa
ENSCLAG00000010424	A1CF	100	73.453	ENSPLAG00000000026	a1cf	100	75.407	Poecilia_latipinna
ENSCLAG00000010424	A1CF	100	73.453	ENSPLAG00000001210	-	100	75.407	Poecilia_latipinna
ENSCLAG00000010424	A1CF	100	66.340	ENSPMEG00000000921	a1cf	100	68.301	Poecilia_mexicana
ENSCLAG00000010424	A1CF	100	67.484	ENSPMEG00000015529	-	100	69.444	Poecilia_mexicana
ENSCLAG00000010424	A1CF	100	74.430	ENSPREG00000016298	a1cf	100	76.384	Poecilia_reticulata
ENSCLAG00000010424	A1CF	100	95.302	ENSPPYG00000002819	A1CF	100	95.302	Pongo_abelii
ENSCLAG00000010424	A1CF	80	73.207	ENSPCAG00000006463	A1CF	70	91.837	Procavia_capensis
ENSCLAG00000010424	A1CF	100	95.645	ENSPCOG00000024172	A1CF	100	95.645	Propithecus_coquereli
ENSCLAG00000010424	A1CF	100	74.715	ENSPNYG00000017944	a1cf	100	76.672	Pundamilia_nyererei
ENSCLAG00000010424	A1CF	100	78.642	ENSPNAG00000007704	a1cf	100	78.642	Pygocentrus_nattereri
ENSCLAG00000010424	A1CF	100	91.946	ENSRNOG00000033195	A1cf	100	91.946	Rattus_norvegicus
ENSCLAG00000010424	A1CF	100	89.465	ENSRBIG00000042892	A1CF	100	93.164	Rhinopithecus_bieti
ENSCLAG00000010424	A1CF	100	96.309	ENSRROG00000041398	A1CF	100	96.309	Rhinopithecus_roxellana
ENSCLAG00000010424	A1CF	100	96.141	ENSSBOG00000021930	A1CF	100	96.141	Saimiri_boliviensis_boliviensis
ENSCLAG00000010424	A1CF	100	89.112	ENSSHAG00000005096	A1CF	100	89.112	Sarcophilus_harrisii
ENSCLAG00000010424	A1CF	100	78.275	ENSSFOG00015011774	a1cf	100	78.275	Scleropages_formosus
ENSCLAG00000010424	A1CF	100	74.430	ENSSMAG00000013271	a1cf	100	75.407	Scophthalmus_maximus
ENSCLAG00000010424	A1CF	100	75.331	ENSSDUG00000013930	a1cf	100	76.325	Seriola_dumerili
ENSCLAG00000010424	A1CF	100	69.193	ENSSLDG00000004290	a1cf	100	69.193	Seriola_lalandi_dorsalis
ENSCLAG00000010424	A1CF	95	83.422	ENSSARG00000005940	A1CF	96	83.422	Sorex_araneus
ENSCLAG00000010424	A1CF	95	87.193	ENSSPUG00000006797	A1CF	95	86.316	Sphenodon_punctatus
ENSCLAG00000010424	A1CF	100	94.631	ENSSSCG00000010431	A1CF	100	94.631	Sus_scrofa
ENSCLAG00000010424	A1CF	100	87.479	ENSTGUG00000005090	A1CF	100	87.312	Taeniopygia_guttata
ENSCLAG00000010424	A1CF	100	74.225	ENSTRUG00000001982	a1cf	100	74.225	Takifugu_rubripes
ENSCLAG00000010424	A1CF	100	74.472	ENSTNIG00000003580	a1cf	100	74.472	Tetraodon_nigroviridis
ENSCLAG00000010424	A1CF	97	87.197	ENSTTRG00000013190	A1CF	95	87.197	Tursiops_truncatus
ENSCLAG00000010424	A1CF	100	92.617	ENSUAMG00000020065	A1CF	100	92.953	Ursus_americanus
ENSCLAG00000010424	A1CF	100	93.456	ENSUMAG00000011162	A1CF	100	93.792	Ursus_maritimus
ENSCLAG00000010424	A1CF	87	88.314	ENSVPAG00000006130	A1CF	86	88.314	Vicugna_pacos
ENSCLAG00000010424	A1CF	100	92.617	ENSVVUG00000002504	A1CF	100	92.785	Vulpes_vulpes
ENSCLAG00000010424	A1CF	100	77.667	ENSXETG00000006611	a1cf	100	77.500	Xenopus_tropicalis
ENSCLAG00000010424	A1CF	100	75.410	ENSXCOG00000003302	a1cf	100	76.393	Xiphophorus_couchianus
ENSCLAG00000010424	A1CF	100	76.557	ENSXMAG00000016703	a1cf	100	77.541	Xiphophorus_maculatus