EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCLAG00000010523 (Gene tree)
Gene ID: 102029728
Gene Symbol: CHD3
Alias: Mi-2a|Mi2-ALPHA|ZFH
Full Name: chromodomain helicase DNA binding protein 3
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Minus strand
Length: 21454 bases
Position: chrJH721927.1:9029265-9050718
Accession: 102029728
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000015282	ResIII	PF04851.15	1.6e-08	1	1
ENSCLAP00000015280	ResIII	PF04851.15	1.7e-08	1	1
ENSCLAP00000015281	ResIII	PF04851.15	1.8e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000015442	CHD3-203	5802	-	ENSCLAP00000015282	1933 (aa)	-	-
ENSCLAT00000015440	CHD3-201	6008	XM_013522050	ENSCLAP00000015280	1967 (aa)	XP_013377504	-
ENSCLAT00000015441	CHD3-202	5901	-	ENSCLAP00000015281	1966 (aa)	-	-

Gene Model

Click here to download ENSCLAG00000010523's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000010523's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCLAG00000010523	CHD3	93	71.530	ENSCLAG00000010589	CHD5	98	70.279
ENSCLAG00000010523	CHD3	93	69.554	ENSCLAG00000012244	-	95	69.936

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000010523	CHD3	100	98.603	ENSG00000170004	CHD3	99	97.917	Homo_sapiens
ENSCLAG00000010523	CHD3	86	76.509	ENSAPOG00000005614	chd3	94	82.447	Acanthochromis_polyacanthus
ENSCLAG00000010523	CHD3	69	97.067	ENSAMEG00000003025	-	100	97.067	Ailuropoda_melanoleuca
ENSCLAG00000010523	CHD3	82	87.791	ENSACIG00000019671	chd3	99	87.791	Amphilophus_citrinellus
ENSCLAG00000010523	CHD3	92	80.756	ENSAOCG00000023784	chd3	97	81.675	Amphiprion_ocellaris
ENSCLAG00000010523	CHD3	92	80.069	ENSAPEG00000006341	chd3	96	76.497	Amphiprion_percula
ENSCLAG00000010523	CHD3	92	80.969	ENSATEG00000000848	chd3	95	81.579	Anabas_testudineus
ENSCLAG00000010523	CHD3	99	85.248	ENSACAG00000004276	CHD3	95	84.724	Anolis_carolinensis
ENSCLAG00000010523	CHD3	100	95.679	ENSANAG00000034323	CHD3	99	98.558	Aotus_nancymaae
ENSCLAG00000010523	CHD3	92	80.707	ENSACLG00000009222	chd3	99	74.607	Astatotilapia_calliptera
ENSCLAG00000010523	CHD3	100	98.069	ENSBTAG00000014377	CHD3	97	98.073	Bos_taurus
ENSCLAG00000010523	CHD3	100	98.551	ENSCJAG00000014766	CHD3	98	98.551	Callithrix_jacchus
ENSCLAG00000010523	CHD3	100	98.119	ENSCAFG00000016859	CHD3	98	98.119	Canis_familiaris
ENSCLAG00000010523	CHD3	95	98.026	ENSCAFG00020007422	CHD3	100	97.981	Canis_lupus_dingo
ENSCLAG00000010523	CHD3	100	98.170	ENSCHIG00000016737	CHD3	99	98.170	Capra_hircus
ENSCLAG00000010523	CHD3	100	98.448	ENSTSYG00000035658	CHD3	98	98.448	Carlito_syrichta
ENSCLAG00000010523	CHD3	100	95.780	ENSCAPG00000014864	CHD3	98	95.780	Cavia_aperea
ENSCLAG00000010523	CHD3	100	98.373	ENSCPOG00000022653	CHD3	98	98.373	Cavia_porcellus
ENSCLAG00000010523	CHD3	100	98.448	ENSCCAG00000034792	CHD3	98	98.424	Cebus_capucinus
ENSCLAG00000010523	CHD3	100	98.448	ENSCATG00000041717	CHD3	98	98.448	Cercocebus_atys
ENSCLAG00000010523	CHD3	100	98.119	ENSCSAG00000011122	CHD3	99	98.119	Chlorocebus_sabaeus
ENSCLAG00000010523	CHD3	91	83.361	ENSCPBG00000011966	CHD3	99	87.507	Chrysemys_picta_bellii
ENSCLAG00000010523	CHD3	100	98.345	ENSCANG00000037641	CHD3	98	98.345	Colobus_angolensis_palliatus
ENSCLAG00000010523	CHD3	100	97.570	ENSCGRG00001011306	Chd3	100	97.570	Cricetulus_griseus_chok1gshd
ENSCLAG00000010523	CHD3	94	98.529	ENSCGRG00000007878	Chd3	99	98.529	Cricetulus_griseus_crigri
ENSCLAG00000010523	CHD3	92	79.868	ENSCSEG00000004489	chd3	99	76.090	Cynoglossus_semilaevis
ENSCLAG00000010523	CHD3	87	81.673	ENSCVAG00000007293	chd3	95	82.258	Cyprinodon_variegatus
ENSCLAG00000010523	CHD3	87	85.283	ENSDARG00000021405	chd3	99	76.439	Danio_rerio
ENSCLAG00000010523	CHD3	100	83.451	ENSDNOG00000047846	CHD3	98	83.451	Dasypus_novemcinctus
ENSCLAG00000010523	CHD3	100	97.931	ENSDORG00000010713	Chd3	100	97.931	Dipodomys_ordii
ENSCLAG00000010523	CHD3	98	91.593	ENSETEG00000017733	CHD3	100	91.593	Echinops_telfairi
ENSCLAG00000010523	CHD3	70	78.217	ENSEBUG00000008310	chd3	99	70.415	Eptatretus_burgeri
ENSCLAG00000010523	CHD3	93	98.036	ENSEASG00005019360	CHD3	100	98.036	Equus_asinus_asinus
ENSCLAG00000010523	CHD3	93	98.091	ENSECAG00000010051	CHD3	100	98.091	Equus_caballus
ENSCLAG00000010523	CHD3	93	98.305	ENSEEUG00000015205	CHD3	92	100.000	Erinaceus_europaeus
ENSCLAG00000010523	CHD3	79	90.476	ENSELUG00000019499	chd3	99	90.476	Esox_lucius
ENSCLAG00000010523	CHD3	100	97.814	ENSFCAG00000009629	CHD3	95	97.814	Felis_catus
ENSCLAG00000010523	CHD3	100	96.797	ENSFDAG00000008220	CHD3	99	96.797	Fukomys_damarensis
ENSCLAG00000010523	CHD3	90	80.305	ENSGMOG00000013599	chd3	91	80.914	Gadus_morhua
ENSCLAG00000010523	CHD3	60	74.829	ENSGAFG00000004055	chd3	99	76.410	Gambusia_affinis
ENSCLAG00000010523	CHD3	99	70.690	ENSGACG00000019275	chd3	100	70.896	Gasterosteus_aculeatus
ENSCLAG00000010523	CHD3	76	86.948	ENSGAGG00000013164	CHD3	98	87.084	Gopherus_agassizii
ENSCLAG00000010523	CHD3	100	98.500	ENSGGOG00000013496	CHD3	98	98.500	Gorilla_gorilla
ENSCLAG00000010523	CHD3	100	99.121	ENSHGLG00000012017	CHD3	99	99.085	Heterocephalus_glaber_female
ENSCLAG00000010523	CHD3	89	92.174	ENSHGLG00100013902	CHD3	99	92.174	Heterocephalus_glaber_male
ENSCLAG00000010523	CHD3	95	72.162	ENSHCOG00000010170	chd3	96	72.893	Hippocampus_comes
ENSCLAG00000010523	CHD3	86	80.510	ENSIPUG00000003271	chd3	96	79.571	Ictalurus_punctatus
ENSCLAG00000010523	CHD3	100	98.293	ENSSTOG00000025907	CHD3	100	98.293	Ictidomys_tridecemlineatus
ENSCLAG00000010523	CHD3	100	97.465	ENSJJAG00000017633	Chd3	100	97.465	Jaculus_jaculus
ENSCLAG00000010523	CHD3	86	90.047	ENSKMAG00000019292	chd3	97	75.795	Kryptolebias_marmoratus
ENSCLAG00000010523	CHD3	97	70.554	ENSLBEG00000028485	chd3	91	87.826	Labrus_bergylta
ENSCLAG00000010523	CHD3	97	75.256	ENSLACG00000008031	CHD3	98	75.407	Latimeria_chalumnae
ENSCLAG00000010523	CHD3	98	76.591	ENSLOCG00000013965	chd3	97	77.399	Lepisosteus_oculatus
ENSCLAG00000010523	CHD3	96	93.955	ENSLAFG00000000572	CHD3	99	93.955	Loxodonta_africana
ENSCLAG00000010523	CHD3	100	98.448	ENSMFAG00000020113	CHD3	98	98.448	Macaca_fascicularis
ENSCLAG00000010523	CHD3	100	95.933	ENSMMUG00000022221	CHD3	99	95.540	Macaca_mulatta
ENSCLAG00000010523	CHD3	100	98.396	ENSMNEG00000001728	CHD3	99	97.652	Macaca_nemestrina
ENSCLAG00000010523	CHD3	100	98.448	ENSMLEG00000032249	CHD3	98	98.448	Mandrillus_leucophaeus
ENSCLAG00000010523	CHD3	86	76.694	ENSMAMG00000000564	chd3	99	77.289	Mastacembelus_armatus
ENSCLAG00000010523	CHD3	100	97.363	ENSMAUG00000013873	Chd3	99	94.423	Mesocricetus_auratus
ENSCLAG00000010523	CHD3	100	98.271	ENSMICG00000008741	CHD3	99	95.538	Microcebus_murinus
ENSCLAG00000010523	CHD3	99	97.667	ENSMOCG00000004848	Chd3	100	97.667	Microtus_ochrogaster
ENSCLAG00000010523	CHD3	96	74.613	ENSMMOG00000012699	chd3	99	74.307	Mola_mola
ENSCLAG00000010523	CHD3	93	94.389	ENSMODG00000007509	CHD3	100	94.333	Monodelphis_domestica
ENSCLAG00000010523	CHD3	100	97.314	MGP_CAROLIEiJ_G0016564	Chd3	100	97.402	Mus_caroli
ENSCLAG00000010523	CHD3	100	97.417	ENSMUSG00000018474	Chd3	99	97.508	Mus_musculus
ENSCLAG00000010523	CHD3	100	97.519	MGP_PahariEiJ_G0017695	Chd3	100	97.613	Mus_pahari
ENSCLAG00000010523	CHD3	100	97.469	MGP_SPRETEiJ_G0017400	Chd3	100	97.561	Mus_spretus
ENSCLAG00000010523	CHD3	87	97.841	ENSMPUG00000008861	CHD3	100	97.841	Mustela_putorius_furo
ENSCLAG00000010523	CHD3	100	97.156	ENSMLUG00000014643	-	98	97.156	Myotis_lucifugus
ENSCLAG00000010523	CHD3	100	97.865	ENSNGAG00000000773	Chd3	98	97.865	Nannospalax_galili
ENSCLAG00000010523	CHD3	86	75.653	ENSNBRG00000000636	chd3	98	75.573	Neolamprologus_brichardi
ENSCLAG00000010523	CHD3	98	95.774	ENSNLEG00000009770	CHD3	100	95.330	Nomascus_leucogenys
ENSCLAG00000010523	CHD3	86	93.373	ENSMEUG00000005852	CHD3	86	93.373	Notamacropus_eugenii
ENSCLAG00000010523	CHD3	95	96.423	ENSOPRG00000011069	CHD3	100	96.423	Ochotona_princeps
ENSCLAG00000010523	CHD3	100	98.831	ENSODEG00000017785	CHD3	99	98.831	Octodon_degus
ENSCLAG00000010523	CHD3	96	74.804	ENSONIG00000009292	chd3	100	74.948	Oreochromis_niloticus
ENSCLAG00000010523	CHD3	99	93.184	ENSOCUG00000029299	CHD3	100	93.035	Oryctolagus_cuniculus
ENSCLAG00000010523	CHD3	83	71.674	ENSORLG00000007107	chd3	93	71.858	Oryzias_latipes
ENSCLAG00000010523	CHD3	58	73.080	ENSORLG00020008387	chd3	95	73.522	Oryzias_latipes_hni
ENSCLAG00000010523	CHD3	72	80.214	ENSOMEG00000013691	chd3	99	78.261	Oryzias_melastigma
ENSCLAG00000010523	CHD3	100	98.017	ENSOGAG00000003216	CHD3	99	98.017	Otolemur_garnettii
ENSCLAG00000010523	CHD3	100	95.736	ENSOARG00000017855	CHD3	98	95.736	Ovis_aries
ENSCLAG00000010523	CHD3	100	96.192	ENSPPAG00000032886	CHD3	98	96.192	Pan_paniscus
ENSCLAG00000010523	CHD3	100	97.931	ENSPPRG00000000626	CHD3	98	97.931	Panthera_pardus
ENSCLAG00000010523	CHD3	100	98.655	ENSPTRG00000008714	CHD3	98	98.655	Pan_troglodytes
ENSCLAG00000010523	CHD3	100	98.322	ENSPANG00000023938	CHD3	98	98.322	Papio_anubis
ENSCLAG00000010523	CHD3	95	80.459	ENSPKIG00000006305	chd3	99	80.538	Paramormyrops_kingsleyae
ENSCLAG00000010523	CHD3	56	90.328	ENSPSIG00000010177	CHD3	98	90.602	Pelodiscus_sinensis
ENSCLAG00000010523	CHD3	100	97.358	ENSPEMG00000014262	Chd3	99	97.358	Peromyscus_maniculatus_bairdii
ENSCLAG00000010523	CHD3	100	93.779	ENSPCIG00000005442	CHD3	97	96.296	Phascolarctos_cinereus
ENSCLAG00000010523	CHD3	92	79.795	ENSPFOG00000012464	chd3	92	76.627	Poecilia_formosa
ENSCLAG00000010523	CHD3	87	82.996	ENSPLAG00000002887	chd3	96	82.996	Poecilia_latipinna
ENSCLAG00000010523	CHD3	54	81.141	ENSPMEG00000016725	chd3	94	72.987	Poecilia_mexicana
ENSCLAG00000010523	CHD3	90	84.133	ENSPREG00000011044	chd3	99	78.391	Poecilia_reticulata
ENSCLAG00000010523	CHD3	98	95.544	ENSPPYG00000007940	CHD3	98	95.544	Pongo_abelii
ENSCLAG00000010523	CHD3	96	97.355	ENSPCAG00000004350	CHD3	96	97.355	Procavia_capensis
ENSCLAG00000010523	CHD3	100	98.293	ENSPCOG00000020952	CHD3	99	98.171	Propithecus_coquereli
ENSCLAG00000010523	CHD3	87	96.499	ENSPVAG00000016344	CHD3	87	96.499	Pteropus_vampyrus
ENSCLAG00000010523	CHD3	99	77.368	ENSPNAG00000020393	chd3	98	80.420	Pygocentrus_nattereri
ENSCLAG00000010523	CHD3	93	97.004	ENSRNOG00000009722	Chd3	100	97.004	Rattus_norvegicus
ENSCLAG00000010523	CHD3	100	95.250	ENSRBIG00000033562	CHD3	99	94.666	Rhinopithecus_bieti
ENSCLAG00000010523	CHD3	100	98.448	ENSRROG00000029554	CHD3	98	98.448	Rhinopithecus_roxellana
ENSCLAG00000010523	CHD3	100	98.655	ENSSBOG00000020719	CHD3	99	97.979	Saimiri_boliviensis_boliviensis
ENSCLAG00000010523	CHD3	99	94.808	ENSSHAG00000014412	CHD3	100	94.808	Sarcophilus_harrisii
ENSCLAG00000010523	CHD3	88	80.493	ENSSFOG00015023123	chd3	98	75.410	Scleropages_formosus
ENSCLAG00000010523	CHD3	79	90.741	ENSSMAG00000006451	chd3	99	76.411	Scophthalmus_maximus
ENSCLAG00000010523	CHD3	56	72.711	ENSSDUG00000005792	chd3	95	73.260	Seriola_dumerili
ENSCLAG00000010523	CHD3	92	80.412	ENSSPAG00000013694	chd3	99	78.352	Stegastes_partitus
ENSCLAG00000010523	CHD3	100	98.069	ENSSSCG00000021363	CHD3	100	97.928	Sus_scrofa
ENSCLAG00000010523	CHD3	77	76.494	ENSTRUG00000014990	chd3	95	72.520	Takifugu_rubripes
ENSCLAG00000010523	CHD3	98	73.665	ENSTNIG00000012998	chd3	99	73.022	Tetraodon_nigroviridis
ENSCLAG00000010523	CHD3	65	100.000	ENSTBEG00000011454	-	71	100.000	Tupaia_belangeri
ENSCLAG00000010523	CHD3	99	98.765	ENSTTRG00000010295	CHD3	97	98.765	Tursiops_truncatus
ENSCLAG00000010523	CHD3	93	96.952	ENSUAMG00000005475	CHD3	99	96.952	Ursus_americanus
ENSCLAG00000010523	CHD3	57	100.000	ENSVPAG00000010794	-	62	100.000	Vicugna_pacos
ENSCLAG00000010523	CHD3	96	98.002	ENSVVUG00000028011	CHD3	99	97.869	Vulpes_vulpes
ENSCLAG00000010523	CHD3	99	72.649	ENSXETG00000012991	chd3	92	73.856	Xenopus_tropicalis
ENSCLAG00000010523	CHD3	53	82.751	ENSXCOG00000000809	chd3	96	82.864	Xiphophorus_couchianus
ENSCLAG00000010523	CHD3	82	86.127	ENSXMAG00000016035	chd3	99	86.127	Xiphophorus_maculatus