EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCLAG00000010828 (Gene tree)
Gene ID: 102022420
Gene Symbol: LSM4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Plus strand
Length: 7590 bases
Position: chrJH721984.1:3157607-3165196
Accession: 102022420
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000015753	LSM	PF01423.22	7.5e-17	1	1
ENSCLAP00000015755	LSM	PF01423.22	7.5e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000015918	LSM4-203	420	-	ENSCLAP00000015755	139 (aa)	-	UPI00038ED296
ENSCLAT00000015916	LSM4-201	845	XM_005409570	ENSCLAP00000015753	139 (aa)	XP_005409627	UPI00038ED296
ENSCLAT00000015917	LSM4-202	321	-	ENSCLAP00000015754	106 (aa)	-	-

Gene Model

Click here to download ENSCLAG00000010828's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000010828's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCLAG00000010828	LSM4	52	34.722	ENSCLAG00000011403	SNRPD3	56	34.722
ENSCLAG00000010828	LSM4	70	32.000	ENSCLAG00000008081	LSM2	82	35.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000010828	LSM4	100	96.403	ENSG00000130520	LSM4	100	96.403	Homo_sapiens
ENSCLAG00000010828	LSM4	99	73.649	ENSAPOG00000005643	lsm4	58	98.864	Acanthochromis_polyacanthus
ENSCLAG00000010828	LSM4	99	96.377	ENSAMEG00000011162	LSM4	95	96.377	Ailuropoda_melanoleuca
ENSCLAG00000010828	LSM4	99	78.322	ENSAOCG00000006414	lsm4	59	98.864	Amphiprion_ocellaris
ENSCLAG00000010828	LSM4	99	74.658	ENSAPEG00000006238	lsm4	59	98.864	Amphiprion_percula
ENSCLAG00000010828	LSM4	71	96.970	ENSATEG00000016559	lsm4	58	98.864	Anabas_testudineus
ENSCLAG00000010828	LSM4	100	96.403	ENSANAG00000034659	LSM4	100	96.403	Aotus_nancymaae
ENSCLAG00000010828	LSM4	99	81.250	ENSACLG00000022738	lsm4	60	98.864	Astatotilapia_calliptera
ENSCLAG00000010828	LSM4	99	78.986	ENSAMXG00000016932	lsm4	96	83.212	Astyanax_mexicanus
ENSCLAG00000010828	LSM4	100	96.403	ENSBTAG00000008578	LSM4	100	96.403	Bos_taurus
ENSCLAG00000010828	LSM4	60	75.904	WBGene00003078	lsm-4	67	75.904	Caenorhabditis_elegans
ENSCLAG00000010828	LSM4	100	96.403	ENSCJAG00000014171	LSM4	100	96.403	Callithrix_jacchus
ENSCLAG00000010828	LSM4	99	96.377	ENSCAFG00000014900	LSM4	90	96.377	Canis_familiaris
ENSCLAG00000010828	LSM4	100	96.403	ENSCAFG00020012137	LSM4	100	96.403	Canis_lupus_dingo
ENSCLAG00000010828	LSM4	99	96.377	ENSCHIG00000010928	LSM4	91	96.377	Capra_hircus
ENSCLAG00000010828	LSM4	100	95.683	ENSTSYG00000030906	LSM4	100	95.683	Carlito_syrichta
ENSCLAG00000010828	LSM4	100	95.683	ENSCAPG00000014140	LSM4	100	95.683	Cavia_aperea
ENSCLAG00000010828	LSM4	100	95.683	ENSCPOG00000024117	LSM4	100	95.683	Cavia_porcellus
ENSCLAG00000010828	LSM4	100	96.403	ENSCCAG00000036308	LSM4	100	96.403	Cebus_capucinus
ENSCLAG00000010828	LSM4	100	96.403	ENSCATG00000029311	LSM4	100	96.403	Cercocebus_atys
ENSCLAG00000010828	LSM4	100	96.403	ENSCSAG00000005370	LSM4	100	96.403	Chlorocebus_sabaeus
ENSCLAG00000010828	LSM4	100	79.856	ENSCPBG00000012925	LSM4	100	88.489	Chrysemys_picta_bellii
ENSCLAG00000010828	LSM4	62	91.860	ENSCING00000007519	-	69	92.045	Ciona_intestinalis
ENSCLAG00000010828	LSM4	62	93.023	ENSCSAVG00000008596	-	70	93.182	Ciona_savignyi
ENSCLAG00000010828	LSM4	100	96.403	ENSCANG00000043686	LSM4	100	96.403	Colobus_angolensis_palliatus
ENSCLAG00000010828	LSM4	100	92.086	ENSCGRG00001014436	Lsm4	100	92.086	Cricetulus_griseus_chok1gshd
ENSCLAG00000010828	LSM4	99	92.029	ENSCGRG00000009398	Lsm4	100	92.029	Cricetulus_griseus_crigri
ENSCLAG00000010828	LSM4	70	95.876	ENSCSEG00000016127	lsm4	96	77.372	Cynoglossus_semilaevis
ENSCLAG00000010828	LSM4	88	73.984	ENSCVAG00000021828	lsm4	94	73.984	Cyprinodon_variegatus
ENSCLAG00000010828	LSM4	99	76.812	ENSCVAG00000010601	lsm4	62	97.727	Cyprinodon_variegatus
ENSCLAG00000010828	LSM4	97	78.723	ENSDARG00000023852	lsm4	62	98.864	Danio_rerio
ENSCLAG00000010828	LSM4	100	97.122	ENSDORG00000024225	Lsm4	100	97.122	Dipodomys_ordii
ENSCLAG00000010828	LSM4	70	81.443	FBgn0032240	CG17768	57	88.636	Drosophila_melanogaster
ENSCLAG00000010828	LSM4	89	94.355	ENSETEG00000007762	-	100	94.355	Echinops_telfairi
ENSCLAG00000010828	LSM4	54	93.333	ENSEBUG00000003639	-	53	88.750	Eptatretus_burgeri
ENSCLAG00000010828	LSM4	100	96.403	ENSECAG00000010141	LSM4	57	96.403	Equus_caballus
ENSCLAG00000010828	LSM4	95	81.818	ENSELUG00000012821	lsm4	100	81.818	Esox_lucius
ENSCLAG00000010828	LSM4	100	96.403	ENSFCAG00000040580	LSM4	100	96.403	Felis_catus
ENSCLAG00000010828	LSM4	99	78.986	ENSFALG00000009478	LSM4	99	88.406	Ficedula_albicollis
ENSCLAG00000010828	LSM4	99	97.826	ENSFDAG00000010124	LSM4	100	97.826	Fukomys_damarensis
ENSCLAG00000010828	LSM4	69	96.875	ENSGMOG00000007729	lsm4	95	78.723	Gadus_morhua
ENSCLAG00000010828	LSM4	100	79.137	ENSGALG00000003385	LSM4	100	88.489	Gallus_gallus
ENSCLAG00000010828	LSM4	79	82.258	ENSGAFG00000004903	lsm4	55	94.521	Gambusia_affinis
ENSCLAG00000010828	LSM4	68	97.895	ENSGACG00000008140	lsm4	59	98.864	Gasterosteus_aculeatus
ENSCLAG00000010828	LSM4	100	79.856	ENSGAGG00000017812	LSM4	100	88.489	Gopherus_agassizii
ENSCLAG00000010828	LSM4	100	96.403	ENSGGOG00000012914	-	100	96.403	Gorilla_gorilla
ENSCLAG00000010828	LSM4	100	97.122	ENSHGLG00000006568	LSM4	100	97.122	Heterocephalus_glaber_female
ENSCLAG00000010828	LSM4	67	100.000	ENSHGLG00100007894	LSM4	100	100.000	Heterocephalus_glaber_male
ENSCLAG00000010828	LSM4	99	76.642	ENSHCOG00000008819	lsm4	62	98.864	Hippocampus_comes
ENSCLAG00000010828	LSM4	99	80.435	ENSIPUG00000005368	Lsm4	96	83.212	Ictalurus_punctatus
ENSCLAG00000010828	LSM4	100	96.403	ENSSTOG00000016494	LSM4	100	96.403	Ictidomys_tridecemlineatus
ENSCLAG00000010828	LSM4	100	93.525	ENSJJAG00000017420	Lsm4	100	93.525	Jaculus_jaculus
ENSCLAG00000010828	LSM4	62	97.674	ENSKMAG00000005073	lsm4	61	97.727	Kryptolebias_marmoratus
ENSCLAG00000010828	LSM4	71	96.970	ENSLBEG00000027930	lsm4	59	98.864	Labrus_bergylta
ENSCLAG00000010828	LSM4	99	81.022	ENSLACG00000015861	LSM4	98	81.022	Latimeria_chalumnae
ENSCLAG00000010828	LSM4	93	81.395	ENSLOCG00000002025	lsm4	62	97.727	Lepisosteus_oculatus
ENSCLAG00000010828	LSM4	99	94.928	ENSLAFG00000017459	LSM4	99	94.928	Loxodonta_africana
ENSCLAG00000010828	LSM4	100	96.403	ENSMFAG00000031194	LSM4	100	96.403	Macaca_fascicularis
ENSCLAG00000010828	LSM4	100	96.403	ENSMMUG00000004405	LSM4	100	96.403	Macaca_mulatta
ENSCLAG00000010828	LSM4	100	96.403	ENSMNEG00000042899	LSM4	100	96.403	Macaca_nemestrina
ENSCLAG00000010828	LSM4	100	96.403	ENSMLEG00000027948	LSM4	100	96.403	Mandrillus_leucophaeus
ENSCLAG00000010828	LSM4	99	85.612	ENSMAMG00000006190	lsm4	96	76.642	Mastacembelus_armatus
ENSCLAG00000010828	LSM4	99	81.818	ENSMZEG00005016420	lsm4	60	98.864	Maylandia_zebra
ENSCLAG00000010828	LSM4	99	81.295	ENSMGAG00000004976	LSM4	99	86.957	Meleagris_gallopavo
ENSCLAG00000010828	LSM4	100	95.683	ENSMICG00000000222	LSM4	100	95.683	Microcebus_murinus
ENSCLAG00000010828	LSM4	100	92.806	ENSMOCG00000020861	Lsm4	100	92.806	Microtus_ochrogaster
ENSCLAG00000010828	LSM4	89	92.742	ENSMODG00000015044	-	100	92.742	Monodelphis_domestica
ENSCLAG00000010828	LSM4	99	76.429	ENSMALG00000018159	lsm4	62	97.727	Monopterus_albus
ENSCLAG00000010828	LSM4	100	92.806	MGP_CAROLIEiJ_G0031158	Lsm4	100	92.806	Mus_caroli
ENSCLAG00000010828	LSM4	100	92.806	ENSMUSG00000031848	Lsm4	100	92.806	Mus_musculus
ENSCLAG00000010828	LSM4	100	92.806	MGP_PahariEiJ_G0021623	Lsm4	100	92.806	Mus_pahari
ENSCLAG00000010828	LSM4	100	92.806	MGP_SPRETEiJ_G0032276	Lsm4	100	92.806	Mus_spretus
ENSCLAG00000010828	LSM4	100	96.403	ENSMPUG00000015589	LSM4	100	96.403	Mustela_putorius_furo
ENSCLAG00000010828	LSM4	99	96.377	ENSMLUG00000004010	LSM4	99	96.377	Myotis_lucifugus
ENSCLAG00000010828	LSM4	100	92.806	ENSNGAG00000008644	Lsm4	100	92.806	Nannospalax_galili
ENSCLAG00000010828	LSM4	71	96.939	ENSNBRG00000022150	lsm4	54	98.851	Neolamprologus_brichardi
ENSCLAG00000010828	LSM4	89	89.516	ENSMEUG00000013229	LSM4	100	89.516	Notamacropus_eugenii
ENSCLAG00000010828	LSM4	89	90.323	ENSOPRG00000005575	LSM4	100	90.323	Ochotona_princeps
ENSCLAG00000010828	LSM4	100	89.209	ENSODEG00000004519	-	100	82.734	Octodon_degus
ENSCLAG00000010828	LSM4	100	99.281	ENSODEG00000020549	-	100	99.281	Octodon_degus
ENSCLAG00000010828	LSM4	100	75.540	ENSODEG00000011712	-	100	75.540	Octodon_degus
ENSCLAG00000010828	LSM4	99	81.250	ENSONIG00000012724	lsm4	60	98.864	Oreochromis_niloticus
ENSCLAG00000010828	LSM4	63	93.407	ENSOANG00000007434	LSM4	78	93.407	Ornithorhynchus_anatinus
ENSCLAG00000010828	LSM4	99	83.688	ENSORLG00000008391	lsm4	97	74.820	Oryzias_latipes
ENSCLAG00000010828	LSM4	99	83.688	ENSORLG00020014829	lsm4	97	74.820	Oryzias_latipes_hni
ENSCLAG00000010828	LSM4	99	84.397	ENSORLG00015010205	lsm4	97	74.820	Oryzias_latipes_hsok
ENSCLAG00000010828	LSM4	100	82.014	ENSOMEG00000003606	lsm4	61	97.727	Oryzias_melastigma
ENSCLAG00000010828	LSM4	71	97.980	ENSOGAG00000027992	LSM4	60	100.000	Otolemur_garnettii
ENSCLAG00000010828	LSM4	86	95.798	ENSOARG00000012553	LSM4	94	95.798	Ovis_aries
ENSCLAG00000010828	LSM4	100	96.403	ENSPPAG00000044045	-	100	96.403	Pan_paniscus
ENSCLAG00000010828	LSM4	100	96.403	ENSPPRG00000018264	LSM4	100	96.403	Panthera_pardus
ENSCLAG00000010828	LSM4	99	96.377	ENSPTIG00000006306	LSM4	100	96.377	Panthera_tigris_altaica
ENSCLAG00000010828	LSM4	100	96.403	ENSPTRG00000031470	LSM4	100	96.403	Pan_troglodytes
ENSCLAG00000010828	LSM4	100	96.403	ENSPANG00000014399	LSM4	100	96.403	Papio_anubis
ENSCLAG00000010828	LSM4	99	80.292	ENSPKIG00000006154	lsm4	62	98.864	Paramormyrops_kingsleyae
ENSCLAG00000010828	LSM4	99	78.986	ENSPSIG00000012358	LSM4	100	88.406	Pelodiscus_sinensis
ENSCLAG00000010828	LSM4	100	92.806	ENSPEMG00000001358	Lsm4	100	92.806	Peromyscus_maniculatus_bairdii
ENSCLAG00000010828	LSM4	99	78.723	ENSPLAG00000016267	lsm4	62	98.864	Poecilia_latipinna
ENSCLAG00000010828	LSM4	99	83.571	ENSPMEG00000016378	lsm4	63	98.851	Poecilia_mexicana
ENSCLAG00000010828	LSM4	100	96.403	ENSPPYG00000009736	LSM4	100	96.403	Pongo_abelii
ENSCLAG00000010828	LSM4	89	94.355	ENSPCAG00000008513	LSM4	100	94.355	Procavia_capensis
ENSCLAG00000010828	LSM4	100	95.683	ENSPCOG00000019837	LSM4	100	95.683	Propithecus_coquereli
ENSCLAG00000010828	LSM4	100	96.403	ENSPVAG00000015383	LSM4	100	96.403	Pteropus_vampyrus
ENSCLAG00000010828	LSM4	99	81.818	ENSPNYG00000016794	lsm4	60	98.864	Pundamilia_nyererei
ENSCLAG00000010828	LSM4	96	81.343	ENSPNAG00000016598	lsm4	65	98.851	Pygocentrus_nattereri
ENSCLAG00000010828	LSM4	100	92.806	ENSRNOG00000019572	Lsm4	100	92.806	Rattus_norvegicus
ENSCLAG00000010828	LSM4	100	96.403	ENSRBIG00000024717	LSM4	100	96.403	Rhinopithecus_bieti
ENSCLAG00000010828	LSM4	100	96.403	ENSRROG00000045706	LSM4	100	96.403	Rhinopithecus_roxellana
ENSCLAG00000010828	LSM4	60	40.860	YER112W	LSM4	51	39.583	Saccharomyces_cerevisiae
ENSCLAG00000010828	LSM4	90	96.000	ENSSBOG00000022455	LSM4	100	96.000	Saimiri_boliviensis_boliviensis
ENSCLAG00000010828	LSM4	100	93.525	ENSSHAG00000011559	LSM4	100	93.525	Sarcophilus_harrisii
ENSCLAG00000010828	LSM4	99	79.562	ENSSFOG00015021067	lsm4	62	98.864	Scleropages_formosus
ENSCLAG00000010828	LSM4	99	71.831	ENSSMAG00000021020	lsm4	95	72.535	Scophthalmus_maximus
ENSCLAG00000010828	LSM4	71	96.970	ENSSDUG00000009588	lsm4	53	98.864	Seriola_dumerili
ENSCLAG00000010828	LSM4	71	96.970	ENSSLDG00000006827	lsm4	52	98.864	Seriola_lalandi_dorsalis
ENSCLAG00000010828	LSM4	63	98.851	ENSSPUG00000010166	LSM4	56	98.851	Sphenodon_punctatus
ENSCLAG00000010828	LSM4	99	73.649	ENSSPAG00000011615	lsm4	58	98.864	Stegastes_partitus
ENSCLAG00000010828	LSM4	100	96.403	ENSSSCG00000034314	LSM4	100	96.403	Sus_scrofa
ENSCLAG00000010828	LSM4	93	77.372	ENSTRUG00000021737	lsm4	62	96.591	Takifugu_rubripes
ENSCLAG00000010828	LSM4	99	80.714	ENSTNIG00000010191	lsm4	61	97.727	Tetraodon_nigroviridis
ENSCLAG00000010828	LSM4	99	96.377	ENSUAMG00000000665	LSM4	99	96.377	Ursus_americanus
ENSCLAG00000010828	LSM4	100	96.403	ENSUMAG00000009013	LSM4	100	96.403	Ursus_maritimus
ENSCLAG00000010828	LSM4	99	96.377	ENSVVUG00000008136	LSM4	71	96.377	Vulpes_vulpes
ENSCLAG00000010828	LSM4	100	82.014	ENSXETG00000024933	lsm4	100	87.770	Xenopus_tropicalis