EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCLAG00000011139 (Gene tree)
Gene ID: 102011463
Gene Symbol: TNRC6C
Alias: FLJ20015|KIAA1582
Full Name: trinucleotide repeat containing 6C
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Minus strand
Length: 118516 bases
Position: chrJH721966.1:4440555-4559070
Accession: 102011463
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000016191	Ago_hook	PF10427.9	2.6e-23	1	1
ENSCLAP00000016190	Ago_hook	PF10427.9	1e-22	1	1
ENSCLAP00000016192	Ago_hook	PF10427.9	1.1e-22	1	1
ENSCLAP00000016190	RRM_1	PF00076.22	0.00023	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000016356	TNRC6C-203	5836	-	ENSCLAP00000016192	1918 (aa)	-	-
ENSCLAT00000016355	TNRC6C-202	5898	-	ENSCLAP00000016191	1965 (aa)	-	-
ENSCLAT00000016354	TNRC6C-201	6967	XM_005407391	ENSCLAP00000016190	1893 (aa)	XP_005407448	UPI000697B98C

Gene Model

Click here to download ENSCLAG00000011139's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000011139's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCLAG00000011139	TNRC6C	98	34.536	ENSCLAG00000016942	TNRC6B	96	35.449
ENSCLAG00000011139	TNRC6C	99	41.077	ENSCLAG00000010217	TNRC6A	97	40.580

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000011139	TNRC6C	99	90.370	ENSG00000078687	TNRC6C	100	93.077	Homo_sapiens
ENSCLAG00000011139	TNRC6C	71	56.115	ENSAPOG00000019749	tnrc6c1	98	50.972	Acanthochromis_polyacanthus
ENSCLAG00000011139	TNRC6C	93	86.264	ENSAMEG00000013756	TNRC6C	99	86.264	Ailuropoda_melanoleuca
ENSCLAG00000011139	TNRC6C	90	51.381	ENSACIG00000008075	tnrc6c1	79	52.885	Amphilophus_citrinellus
ENSCLAG00000011139	TNRC6C	71	63.676	ENSAOCG00000023968	tnrc6c1	99	50.026	Amphiprion_ocellaris
ENSCLAG00000011139	TNRC6C	71	55.374	ENSAPEG00000009020	tnrc6c1	99	50.400	Amphiprion_percula
ENSCLAG00000011139	TNRC6C	99	83.904	ENSAPLG00000005456	TNRC6C	100	83.437	Anas_platyrhynchos
ENSCLAG00000011139	TNRC6C	99	83.894	ENSACAG00000016198	TNRC6C	99	83.497	Anolis_carolinensis
ENSCLAG00000011139	TNRC6C	99	89.740	ENSANAG00000021554	TNRC6C	100	92.599	Aotus_nancymaae
ENSCLAG00000011139	TNRC6C	93	47.753	ENSACLG00000000424	tnrc6c1	98	52.277	Astatotilapia_calliptera
ENSCLAG00000011139	TNRC6C	99	85.662	ENSBTAG00000018658	TNRC6C	100	88.336	Bos_taurus
ENSCLAG00000011139	TNRC6C	99	89.948	ENSCJAG00000019431	TNRC6C	100	92.599	Callithrix_jacchus
ENSCLAG00000011139	TNRC6C	99	88.500	ENSCAFG00000005224	TNRC6C	99	88.460	Canis_familiaris
ENSCLAG00000011139	TNRC6C	99	89.984	ENSCAFG00020006661	TNRC6C	100	89.864	Canis_lupus_dingo
ENSCLAG00000011139	TNRC6C	99	87.206	ENSCHIG00000026004	TNRC6C	100	86.380	Capra_hircus
ENSCLAG00000011139	TNRC6C	89	91.763	ENSTSYG00000005403	TNRC6C	100	91.821	Carlito_syrichta
ENSCLAG00000011139	TNRC6C	98	89.460	ENSCAPG00000007307	TNRC6C	99	89.663	Cavia_aperea
ENSCLAG00000011139	TNRC6C	99	94.706	ENSCPOG00000000467	TNRC6C	100	95.159	Cavia_porcellus
ENSCLAG00000011139	TNRC6C	99	90.365	ENSCCAG00000030524	TNRC6C	100	93.073	Cebus_capucinus
ENSCLAG00000011139	TNRC6C	99	90.469	ENSCATG00000033135	TNRC6C	100	93.250	Cercocebus_atys
ENSCLAG00000011139	TNRC6C	99	90.795	ENSCSAG00000005167	TNRC6C	99	90.857	Chlorocebus_sabaeus
ENSCLAG00000011139	TNRC6C	70	91.720	ENSCHOG00000000088	TNRC6C	75	90.514	Choloepus_hoffmanni
ENSCLAG00000011139	TNRC6C	92	87.058	ENSCPBG00000027960	TNRC6C	100	87.626	Chrysemys_picta_bellii
ENSCLAG00000011139	TNRC6C	99	89.948	ENSCANG00000041771	TNRC6C	100	92.599	Colobus_angolensis_palliatus
ENSCLAG00000011139	TNRC6C	99	89.793	ENSCGRG00001022686	Tnrc6c	100	89.669	Cricetulus_griseus_chok1gshd
ENSCLAG00000011139	TNRC6C	99	90.139	ENSCGRG00000018041	Tnrc6c	100	89.669	Cricetulus_griseus_crigri
ENSCLAG00000011139	TNRC6C	97	47.994	ENSCSEG00000012744	tnrc6c1	98	49.010	Cynoglossus_semilaevis
ENSCLAG00000011139	TNRC6C	99	52.756	ENSDARG00000076847	tnrc6c1	99	53.523	Danio_rerio
ENSCLAG00000011139	TNRC6C	99	86.762	ENSDNOG00000003247	TNRC6C	99	86.736	Dasypus_novemcinctus
ENSCLAG00000011139	TNRC6C	98	86.354	ENSDORG00000004558	Tnrc6c	100	87.493	Dipodomys_ordii
ENSCLAG00000011139	TNRC6C	82	82.681	ENSETEG00000005527	TNRC6C	90	82.768	Echinops_telfairi
ENSCLAG00000011139	TNRC6C	89	91.459	ENSEASG00005004799	TNRC6C	100	91.340	Equus_asinus_asinus
ENSCLAG00000011139	TNRC6C	99	90.632	ENSECAG00000012486	TNRC6C	99	90.525	Equus_caballus
ENSCLAG00000011139	TNRC6C	88	89.679	ENSEEUG00000010008	TNRC6C	96	88.663	Erinaceus_europaeus
ENSCLAG00000011139	TNRC6C	99	85.959	ENSFCAG00000028358	TNRC6C	100	89.184	Felis_catus
ENSCLAG00000011139	TNRC6C	89	83.825	ENSFALG00000000848	TNRC6C	100	83.598	Ficedula_albicollis
ENSCLAG00000011139	TNRC6C	92	95.504	ENSFDAG00000010368	TNRC6C	100	95.965	Fukomys_damarensis
ENSCLAG00000011139	TNRC6C	71	52.696	ENSFHEG00000002936	tnrc6c1	99	48.037	Fundulus_heteroclitus
ENSCLAG00000011139	TNRC6C	93	86.063	ENSGALG00000001725	TNRC6C	100	88.316	Gallus_gallus
ENSCLAG00000011139	TNRC6C	99	48.738	ENSGAFG00000019019	tnrc6c1	100	50.139	Gambusia_affinis
ENSCLAG00000011139	TNRC6C	92	86.553	ENSGAGG00000022043	TNRC6C	99	86.464	Gopherus_agassizii
ENSCLAG00000011139	TNRC6C	99	89.849	ENSGGOG00000011304	TNRC6C	100	92.308	Gorilla_gorilla
ENSCLAG00000011139	TNRC6C	97	47.487	ENSHBUG00000010846	tnrc6c1	98	52.570	Haplochromis_burtoni
ENSCLAG00000011139	TNRC6C	99	95.675	ENSHGLG00000004809	TNRC6C	99	95.680	Heterocephalus_glaber_female
ENSCLAG00000011139	TNRC6C	99	94.949	ENSHGLG00100012597	TNRC6C	99	95.008	Heterocephalus_glaber_male
ENSCLAG00000011139	TNRC6C	99	52.472	ENSIPUG00000000818	tnrc6c1	98	53.062	Ictalurus_punctatus
ENSCLAG00000011139	TNRC6C	99	91.397	ENSSTOG00000009101	TNRC6C	100	92.117	Ictidomys_tridecemlineatus
ENSCLAG00000011139	TNRC6C	99	89.538	ENSJJAG00000017055	Tnrc6c	99	89.708	Jaculus_jaculus
ENSCLAG00000011139	TNRC6C	99	47.726	ENSKMAG00000021023	tnrc6c1	100	50.808	Kryptolebias_marmoratus
ENSCLAG00000011139	TNRC6C	92	75.143	ENSLACG00000015283	TNRC6C	100	75.371	Latimeria_chalumnae
ENSCLAG00000011139	TNRC6C	97	69.789	ENSLOCG00000013377	tnrc6c1	99	57.036	Lepisosteus_oculatus
ENSCLAG00000011139	TNRC6C	99	90.441	ENSLAFG00000011122	TNRC6C	99	90.489	Loxodonta_africana
ENSCLAG00000011139	TNRC6C	99	90.449	ENSMFAG00000043943	TNRC6C	100	93.250	Macaca_fascicularis
ENSCLAG00000011139	TNRC6C	99	90.909	ENSMMUG00000011924	TNRC6C	100	93.250	Macaca_mulatta
ENSCLAG00000011139	TNRC6C	99	90.521	ENSMNEG00000030405	TNRC6C	100	93.250	Macaca_nemestrina
ENSCLAG00000011139	TNRC6C	99	90.573	ENSMLEG00000033436	TNRC6C	100	93.310	Mandrillus_leucophaeus
ENSCLAG00000011139	TNRC6C	95	53.118	ENSMAMG00000023613	tnrc6c1	100	50.559	Mastacembelus_armatus
ENSCLAG00000011139	TNRC6C	97	47.411	ENSMZEG00005010920	tnrc6c1	98	52.277	Maylandia_zebra
ENSCLAG00000011139	TNRC6C	99	78.676	ENSMGAG00000003906	TNRC6C	100	78.676	Meleagris_gallopavo
ENSCLAG00000011139	TNRC6C	89	90.909	ENSMAUG00000021618	Tnrc6c	100	90.850	Mesocricetus_auratus
ENSCLAG00000011139	TNRC6C	99	90.573	ENSMICG00000003952	TNRC6C	100	93.250	Microcebus_murinus
ENSCLAG00000011139	TNRC6C	99	91.653	ENSMOCG00000015879	Tnrc6c	100	92.281	Microtus_ochrogaster
ENSCLAG00000011139	TNRC6C	82	56.340	ENSMMOG00000005203	tnrc6c1	100	50.959	Mola_mola
ENSCLAG00000011139	TNRC6C	99	85.289	ENSMODG00000001785	TNRC6C	99	84.987	Monodelphis_domestica
ENSCLAG00000011139	TNRC6C	99	91.122	MGP_CAROLIEiJ_G0017465	Tnrc6c	100	91.993	Mus_caroli
ENSCLAG00000011139	TNRC6C	99	90.803	ENSMUSG00000025571	Tnrc6c	100	91.705	Mus_musculus
ENSCLAG00000011139	TNRC6C	99	90.962	MGP_PahariEiJ_G0018593	Tnrc6c	100	91.820	Mus_pahari
ENSCLAG00000011139	TNRC6C	99	90.899	MGP_SPRETEiJ_G0018309	Tnrc6c	100	91.763	Mus_spretus
ENSCLAG00000011139	TNRC6C	99	86.319	ENSMPUG00000013348	TNRC6C	98	86.266	Mustela_putorius_furo
ENSCLAG00000011139	TNRC6C	99	82.511	ENSMLUG00000014431	TNRC6C	98	82.383	Myotis_lucifugus
ENSCLAG00000011139	TNRC6C	99	91.596	ENSNGAG00000012203	Tnrc6c	99	91.552	Nannospalax_galili
ENSCLAG00000011139	TNRC6C	93	48.294	ENSNBRG00000005344	tnrc6c1	98	52.953	Neolamprologus_brichardi
ENSCLAG00000011139	TNRC6C	98	88.134	ENSNLEG00000000047	TNRC6C	99	88.029	Nomascus_leucogenys
ENSCLAG00000011139	TNRC6C	89	80.518	ENSMEUG00000005104	TNRC6C	100	80.518	Notamacropus_eugenii
ENSCLAG00000011139	TNRC6C	89	97.151	ENSODEG00000012499	TNRC6C	100	97.151	Octodon_degus
ENSCLAG00000011139	TNRC6C	83	51.307	ENSONIG00000002210	tnrc6c1	96	51.948	Oreochromis_niloticus
ENSCLAG00000011139	TNRC6C	99	62.009	ENSOANG00000009758	-	100	62.237	Ornithorhynchus_anatinus
ENSCLAG00000011139	TNRC6C	52	76.369	ENSOCUG00000006122	TNRC6C	60	75.862	Oryctolagus_cuniculus
ENSCLAG00000011139	TNRC6C	93	48.433	ENSORLG00000009837	tnrc6c1	100	67.286	Oryzias_latipes
ENSCLAG00000011139	TNRC6C	93	47.760	ENSORLG00020016510	tnrc6c1	100	49.529	Oryzias_latipes_hni
ENSCLAG00000011139	TNRC6C	75	44.277	ENSORLG00015000171	tnrc6c1	98	44.790	Oryzias_latipes_hsok
ENSCLAG00000011139	TNRC6C	93	48.778	ENSOMEG00000000357	tnrc6c1	99	49.047	Oryzias_melastigma
ENSCLAG00000011139	TNRC6C	89	90.023	ENSOGAG00000007197	TNRC6C	100	90.081	Otolemur_garnettii
ENSCLAG00000011139	TNRC6C	95	82.916	ENSOARG00000006041	TNRC6C	97	83.023	Ovis_aries
ENSCLAG00000011139	TNRC6C	99	90.444	ENSPPAG00000027160	TNRC6C	100	93.132	Pan_paniscus
ENSCLAG00000011139	TNRC6C	99	86.167	ENSPPRG00000018881	TNRC6C	100	89.421	Panthera_pardus
ENSCLAG00000011139	TNRC6C	88	82.162	ENSPTIG00000008791	TNRC6C	91	82.162	Panthera_tigris_altaica
ENSCLAG00000011139	TNRC6C	99	90.521	ENSPTRG00000009699	TNRC6C	100	93.132	Pan_troglodytes
ENSCLAG00000011139	TNRC6C	99	90.521	ENSPANG00000019994	TNRC6C	100	93.416	Papio_anubis
ENSCLAG00000011139	TNRC6C	86	51.845	ENSPKIG00000005428	tnrc6c1	100	50.472	Paramormyrops_kingsleyae
ENSCLAG00000011139	TNRC6C	92	85.172	ENSPSIG00000018069	TNRC6C	100	84.828	Pelodiscus_sinensis
ENSCLAG00000011139	TNRC6C	58	54.409	ENSPMGG00000022911	tnrc6c1	97	63.158	Periophthalmus_magnuspinnatus
ENSCLAG00000011139	TNRC6C	99	90.856	ENSPEMG00000009785	Tnrc6c	99	90.972	Peromyscus_maniculatus_bairdii
ENSCLAG00000011139	TNRC6C	51	84.465	ENSPCIG00000017421	-	99	84.465	Phascolarctos_cinereus
ENSCLAG00000011139	TNRC6C	97	49.049	ENSPFOG00000012560	tnrc6c1	97	54.158	Poecilia_formosa
ENSCLAG00000011139	TNRC6C	89	50.139	ENSPLAG00000021055	tnrc6c1	100	50.278	Poecilia_latipinna
ENSCLAG00000011139	TNRC6C	99	91.014	ENSPPYG00000008679	TNRC6C	98	91.066	Pongo_abelii
ENSCLAG00000011139	TNRC6C	86	92.654	ENSPCAG00000012510	TNRC6C	94	92.654	Procavia_capensis
ENSCLAG00000011139	TNRC6C	89	93.665	ENSPCOG00000021451	TNRC6C	100	93.665	Propithecus_coquereli
ENSCLAG00000011139	TNRC6C	88	88.243	ENSPVAG00000002008	TNRC6C	95	88.399	Pteropus_vampyrus
ENSCLAG00000011139	TNRC6C	93	47.321	ENSPNYG00000014477	tnrc6c1	98	51.809	Pundamilia_nyererei
ENSCLAG00000011139	TNRC6C	89	91.588	ENSRNOG00000022395	Tnrc6c	100	91.647	Rattus_norvegicus
ENSCLAG00000011139	TNRC6C	99	90.183	ENSRBIG00000027777	TNRC6C	100	92.895	Rhinopithecus_bieti
ENSCLAG00000011139	TNRC6C	99	90.260	ENSRROG00000042912	TNRC6C	100	92.954	Rhinopithecus_roxellana
ENSCLAG00000011139	TNRC6C	99	89.911	ENSSBOG00000023981	TNRC6C	100	90.435	Saimiri_boliviensis_boliviensis
ENSCLAG00000011139	TNRC6C	80	56.317	ENSSFOG00015004735	-	99	60.836	Scleropages_formosus
ENSCLAG00000011139	TNRC6C	69	58.660	ENSSFOG00015006475	tnrc6c1	99	52.488	Scleropages_formosus
ENSCLAG00000011139	TNRC6C	92	48.486	ENSSMAG00000012761	tnrc6c1	99	50.978	Scophthalmus_maximus
ENSCLAG00000011139	TNRC6C	93	50.383	ENSSDUG00000002366	tnrc6c1	98	51.063	Seriola_dumerili
ENSCLAG00000011139	TNRC6C	89	49.526	ENSSLDG00000025613	tnrc6c1	100	50.333	Seriola_lalandi_dorsalis
ENSCLAG00000011139	TNRC6C	84	89.655	ENSSARG00000006816	TNRC6C	91	89.427	Sorex_araneus
ENSCLAG00000011139	TNRC6C	79	83.669	ENSSPUG00000007341	TNRC6C	97	83.252	Sphenodon_punctatus
ENSCLAG00000011139	TNRC6C	70	54.494	ENSSPAG00000014977	tnrc6c1	98	49.546	Stegastes_partitus
ENSCLAG00000011139	TNRC6C	89	86.062	ENSSSCG00000034373	TNRC6C	100	88.130	Sus_scrofa
ENSCLAG00000011139	TNRC6C	92	87.414	ENSTGUG00000007733	TNRC6C	100	87.184	Taeniopygia_guttata
ENSCLAG00000011139	TNRC6C	70	54.366	ENSTRUG00000011685	tnrc6c1	100	49.752	Takifugu_rubripes
ENSCLAG00000011139	TNRC6C	88	54.591	ENSTNIG00000005273	tnrc6c1	100	59.764	Tetraodon_nigroviridis
ENSCLAG00000011139	TNRC6C	57	90.625	ENSTBEG00000005046	TNRC6C	95	90.625	Tupaia_belangeri
ENSCLAG00000011139	TNRC6C	92	90.345	ENSTTRG00000010828	TNRC6C	99	90.230	Tursiops_truncatus
ENSCLAG00000011139	TNRC6C	99	87.295	ENSUMAG00000013614	TNRC6C	99	87.414	Ursus_maritimus
ENSCLAG00000011139	TNRC6C	89	91.405	ENSVVUG00000015268	TNRC6C	100	91.286	Vulpes_vulpes
ENSCLAG00000011139	TNRC6C	89	75.132	ENSXETG00000019470	tnrc6c	100	74.794	Xenopus_tropicalis
ENSCLAG00000011139	TNRC6C	99	48.614	ENSXMAG00000025971	tnrc6c1	99	50.980	Xiphophorus_maculatus