EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCLAG00000011267 (Gene tree)
Gene ID: 102010666
Gene Symbol: RC3H1
Alias: KIAA2025|RNF198|RP5-1198E17.5|roquin
Full Name: ring finger and CCCH-type domains 1
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Minus strand
Length: 69908 bases
Position: chrJH721866.1:14053122-14123029
Accession: 102010666
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000016382	zf-CCCH	PF00642.24	0.00019	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000016546	RC3H1-201	4503	XM_005374881	ENSCLAP00000016382	1133 (aa)	XP_005374938	UPI00038ED328

Gene Model

Click here to download ENSCLAG00000011267's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000011267's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCLAG00000011267	RC3H1	92	54.412	ENSCLAG00000013261	RC3H2	85	55.641

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000011267	RC3H1	100	94.974	ENSG00000135870	RC3H1	100	94.974	Homo_sapiens
ENSCLAG00000011267	RC3H1	100	94.616	ENSAMEG00000015657	RC3H1	100	94.616	Ailuropoda_melanoleuca
ENSCLAG00000011267	RC3H1	100	86.387	ENSAPLG00000005341	RC3H1	100	86.126	Anas_platyrhynchos
ENSCLAG00000011267	RC3H1	100	84.031	ENSACAG00000015271	RC3H1	100	83.843	Anolis_carolinensis
ENSCLAG00000011267	RC3H1	100	94.709	ENSANAG00000036716	RC3H1	100	94.797	Aotus_nancymaae
ENSCLAG00000011267	RC3H1	100	93.651	ENSBTAG00000052708	RC3H1	100	93.651	Bos_taurus
ENSCLAG00000011267	RC3H1	100	94.533	ENSCJAG00000009106	RC3H1	100	94.621	Callithrix_jacchus
ENSCLAG00000011267	RC3H1	100	94.616	ENSCAFG00000014434	RC3H1	100	94.616	Canis_familiaris
ENSCLAG00000011267	RC3H1	100	94.533	ENSCAFG00020017112	RC3H1	99	97.978	Canis_lupus_dingo
ENSCLAG00000011267	RC3H1	100	94.086	ENSCHIG00000002873	RC3H1	100	94.086	Capra_hircus
ENSCLAG00000011267	RC3H1	99	93.380	ENSTSYG00000003913	RC3H1	99	93.380	Carlito_syrichta
ENSCLAG00000011267	RC3H1	100	93.915	ENSCPOG00000004349	RC3H1	100	93.563	Cavia_porcellus
ENSCLAG00000011267	RC3H1	100	92.593	ENSCCAG00000025652	RC3H1	98	94.742	Cebus_capucinus
ENSCLAG00000011267	RC3H1	100	95.062	ENSCATG00000033497	RC3H1	100	95.062	Cercocebus_atys
ENSCLAG00000011267	RC3H1	96	95.216	ENSCSAG00000011823	RC3H1	85	95.216	Chlorocebus_sabaeus
ENSCLAG00000011267	RC3H1	100	87.709	ENSCPBG00000014670	RC3H1	100	87.709	Chrysemys_picta_bellii
ENSCLAG00000011267	RC3H1	100	94.978	ENSCANG00000032120	RC3H1	100	94.978	Colobus_angolensis_palliatus
ENSCLAG00000011267	RC3H1	100	93.116	ENSCGRG00001020812	Rc3h1	100	92.763	Cricetulus_griseus_chok1gshd
ENSCLAG00000011267	RC3H1	100	93.116	ENSCGRG00000011952	Rc3h1	100	92.763	Cricetulus_griseus_crigri
ENSCLAG00000011267	RC3H1	55	92.777	ENSDNOG00000011494	RC3H1	98	92.707	Dasypus_novemcinctus
ENSCLAG00000011267	RC3H1	100	94.175	ENSDORG00000004855	Rc3h1	100	94.175	Dipodomys_ordii
ENSCLAG00000011267	RC3H1	82	95.813	ENSETEG00000012064	RC3H1	87	95.813	Echinops_telfairi
ENSCLAG00000011267	RC3H1	100	93.557	ENSEASG00005017000	RC3H1	100	93.557	Equus_asinus_asinus
ENSCLAG00000011267	RC3H1	100	93.380	ENSECAG00000021208	RC3H1	100	93.380	Equus_caballus
ENSCLAG00000011267	RC3H1	83	95.798	ENSEEUG00000014861	RC3H1	93	82.746	Erinaceus_europaeus
ENSCLAG00000011267	RC3H1	100	95.150	ENSFCAG00000014924	RC3H1	100	95.150	Felis_catus
ENSCLAG00000011267	RC3H1	100	86.014	ENSFALG00000002947	RC3H1	100	85.490	Ficedula_albicollis
ENSCLAG00000011267	RC3H1	100	97.176	ENSFDAG00000013303	RC3H1	100	97.176	Fukomys_damarensis
ENSCLAG00000011267	RC3H1	100	85.789	ENSGALG00000004587	RC3H1	100	85.789	Gallus_gallus
ENSCLAG00000011267	RC3H1	100	85.953	ENSGAGG00000018194	RC3H1	100	86.216	Gopherus_agassizii
ENSCLAG00000011267	RC3H1	100	88.576	ENSGGOG00000005735	RC3H1	100	88.576	Gorilla_gorilla
ENSCLAG00000011267	RC3H1	88	90.663	ENSHGLG00000004183	-	99	90.625	Heterocephalus_glaber_female
ENSCLAG00000011267	RC3H1	100	96.646	ENSHGLG00100008577	RC3H1	100	96.646	Heterocephalus_glaber_male
ENSCLAG00000011267	RC3H1	100	94.533	ENSSTOG00000016033	RC3H1	100	94.533	Ictidomys_tridecemlineatus
ENSCLAG00000011267	RC3H1	100	93.645	ENSJJAG00000018915	Rc3h1	100	93.292	Jaculus_jaculus
ENSCLAG00000011267	RC3H1	100	74.087	ENSLACG00000016186	RC3H1	100	77.358	Latimeria_chalumnae
ENSCLAG00000011267	RC3H1	97	95.446	ENSLAFG00000004367	RC3H1	100	95.446	Loxodonta_africana
ENSCLAG00000011267	RC3H1	100	94.974	ENSMFAG00000033725	RC3H1	100	94.974	Macaca_fascicularis
ENSCLAG00000011267	RC3H1	100	95.062	ENSMMUG00000000630	RC3H1	100	95.062	Macaca_mulatta
ENSCLAG00000011267	RC3H1	100	95.062	ENSMNEG00000035968	RC3H1	100	95.062	Macaca_nemestrina
ENSCLAG00000011267	RC3H1	100	94.974	ENSMLEG00000037455	RC3H1	100	94.974	Mandrillus_leucophaeus
ENSCLAG00000011267	RC3H1	97	93.656	ENSMAUG00000020864	Rc3h1	100	93.253	Mesocricetus_auratus
ENSCLAG00000011267	RC3H1	100	95.675	ENSMICG00000003000	RC3H1	100	95.675	Microcebus_murinus
ENSCLAG00000011267	RC3H1	93	92.140	ENSMOCG00000016587	Rc3h1	98	91.856	Microtus_ochrogaster
ENSCLAG00000011267	RC3H1	100	91.013	ENSMODG00000004289	RC3H1	100	90.925	Monodelphis_domestica
ENSCLAG00000011267	RC3H1	100	92.410	MGP_CAROLIEiJ_G0014756	Rc3h1	100	92.056	Mus_caroli
ENSCLAG00000011267	RC3H1	100	92.145	ENSMUSG00000040423	Rc3h1	100	91.792	Mus_musculus
ENSCLAG00000011267	RC3H1	100	92.056	MGP_PahariEiJ_G0027992	Rc3h1	100	91.703	Mus_pahari
ENSCLAG00000011267	RC3H1	100	91.968	MGP_SPRETEiJ_G0015563	Rc3h1	100	91.615	Mus_spretus
ENSCLAG00000011267	RC3H1	100	94.444	ENSMPUG00000004747	RC3H1	100	94.175	Mustela_putorius_furo
ENSCLAG00000011267	RC3H1	100	93.557	ENSMLUG00000011127	RC3H1	100	93.557	Myotis_lucifugus
ENSCLAG00000011267	RC3H1	100	94.351	ENSNGAG00000011135	Rc3h1	100	93.998	Nannospalax_galili
ENSCLAG00000011267	RC3H1	100	95.062	ENSNLEG00000015327	RC3H1	100	95.062	Nomascus_leucogenys
ENSCLAG00000011267	RC3H1	99	81.874	ENSOPRG00000013068	RC3H1	99	81.521	Ochotona_princeps
ENSCLAG00000011267	RC3H1	100	97.087	ENSODEG00000014185	RC3H1	100	97.087	Octodon_degus
ENSCLAG00000011267	RC3H1	100	89.432	ENSOANG00000000924	RC3H1	100	89.432	Ornithorhynchus_anatinus
ENSCLAG00000011267	RC3H1	99	94.181	ENSOCUG00000004930	RC3H1	98	94.181	Oryctolagus_cuniculus
ENSCLAG00000011267	RC3H1	100	88.194	ENSOGAG00000004044	RC3H1	100	88.194	Otolemur_garnettii
ENSCLAG00000011267	RC3H1	100	94.040	ENSOARG00000013011	RC3H1	100	94.040	Ovis_aries
ENSCLAG00000011267	RC3H1	100	94.978	ENSPPAG00000039253	RC3H1	100	94.978	Pan_paniscus
ENSCLAG00000011267	RC3H1	100	94.528	ENSPPRG00000009007	RC3H1	100	94.528	Panthera_pardus
ENSCLAG00000011267	RC3H1	100	94.903	ENSPTIG00000015326	RC3H1	100	94.903	Panthera_tigris_altaica
ENSCLAG00000011267	RC3H1	100	94.978	ENSPTRG00000001702	RC3H1	100	94.978	Pan_troglodytes
ENSCLAG00000011267	RC3H1	100	94.974	ENSPANG00000008886	RC3H1	100	94.974	Papio_anubis
ENSCLAG00000011267	RC3H1	100	87.193	ENSPSIG00000016181	RC3H1	100	87.456	Pelodiscus_sinensis
ENSCLAG00000011267	RC3H1	100	92.321	ENSPEMG00000011966	Rc3h1	100	92.056	Peromyscus_maniculatus_bairdii
ENSCLAG00000011267	RC3H1	70	93.426	ENSPCIG00000002058	RC3H1	95	98.206	Phascolarctos_cinereus
ENSCLAG00000011267	RC3H1	100	91.799	ENSPPYG00000000490	RC3H1	98	94.551	Pongo_abelii
ENSCLAG00000011267	RC3H1	81	100.000	ENSPCAG00000010775	RC3H1	87	100.000	Procavia_capensis
ENSCLAG00000011267	RC3H1	83	94.338	ENSPCOG00000021795	RC3H1	96	94.338	Propithecus_coquereli
ENSCLAG00000011267	RC3H1	100	86.231	ENSPVAG00000007593	RC3H1	100	86.231	Pteropus_vampyrus
ENSCLAG00000011267	RC3H1	97	61.268	ENSPNAG00000023439	rc3h1a	95	90.766	Pygocentrus_nattereri
ENSCLAG00000011267	RC3H1	100	94.978	ENSRBIG00000037743	RC3H1	100	94.978	Rhinopithecus_bieti
ENSCLAG00000011267	RC3H1	100	94.974	ENSRROG00000036546	RC3H1	100	94.974	Rhinopithecus_roxellana
ENSCLAG00000011267	RC3H1	93	87.417	ENSSBOG00000010664	RC3H1	100	88.553	Saimiri_boliviensis_boliviensis
ENSCLAG00000011267	RC3H1	100	89.965	ENSSHAG00000007589	RC3H1	100	89.877	Sarcophilus_harrisii
ENSCLAG00000011267	RC3H1	87	86.712	ENSSARG00000004660	RC3H1	86	86.712	Sorex_araneus
ENSCLAG00000011267	RC3H1	100	83.070	ENSSPUG00000018472	RC3H1	100	82.544	Sphenodon_punctatus
ENSCLAG00000011267	RC3H1	100	95.146	ENSSSCG00000015498	RC3H1	100	95.146	Sus_scrofa
ENSCLAG00000011267	RC3H1	100	86.304	ENSTGUG00000004090	RC3H1	100	86.216	Taeniopygia_guttata
ENSCLAG00000011267	RC3H1	89	96.871	ENSTBEG00000005015	RC3H1	89	96.871	Tupaia_belangeri
ENSCLAG00000011267	RC3H1	100	94.102	ENSTTRG00000008572	RC3H1	100	94.102	Tursiops_truncatus
ENSCLAG00000011267	RC3H1	100	93.998	ENSUAMG00000019525	RC3H1	100	93.998	Ursus_americanus
ENSCLAG00000011267	RC3H1	100	94.533	ENSUMAG00000020087	RC3H1	100	94.533	Ursus_maritimus
ENSCLAG00000011267	RC3H1	91	98.423	ENSVPAG00000002591	RC3H1	92	98.423	Vicugna_pacos
ENSCLAG00000011267	RC3H1	100	94.283	ENSVVUG00000014201	RC3H1	100	94.283	Vulpes_vulpes
ENSCLAG00000011267	RC3H1	100	77.565	ENSXETG00000020030	rc3h1	100	77.003	Xenopus_tropicalis