EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCLAG00000011434 (Gene tree)
Gene ID: 102019400
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Minus strand
Length: 90878 bases
Position: chrJH721881.1:27861958-27952835
Accession: 102019400
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000016643	Upf2	PF04050.14	4.7e-33	1	1
ENSCLAP00000016643	MIF4G	PF02854.19	2.1e-76	1	3
ENSCLAP00000016643	MIF4G	PF02854.19	2.1e-76	2	3
ENSCLAP00000016643	MIF4G	PF02854.19	2.1e-76	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000016807	UPF2-201	6191	XM_013513652	ENSCLAP00000016643	1270 (aa)	XP_013369106	UPI00038EBDDA

Gene Model

Click here to download ENSCLAG00000011434's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000011434's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000011434	UPF2	100	97.091	ENSG00000151461	UPF2	100	97.091	Homo_sapiens
ENSCLAG00000011434	UPF2	99	77.978	ENSAPOG00000015837	UPF2	100	77.900	Acanthochromis_polyacanthus
ENSCLAG00000011434	UPF2	100	97.876	ENSAMEG00000004586	UPF2	100	97.876	Ailuropoda_melanoleuca
ENSCLAG00000011434	UPF2	99	81.939	ENSACIG00000018078	UPF2	100	81.861	Amphilophus_citrinellus
ENSCLAG00000011434	UPF2	100	82.045	ENSAOCG00000016766	UPF2	100	82.123	Amphiprion_ocellaris
ENSCLAG00000011434	UPF2	100	82.123	ENSAPEG00000019084	UPF2	100	82.201	Amphiprion_percula
ENSCLAG00000011434	UPF2	100	81.946	ENSATEG00000021677	UPF2	99	81.995	Anabas_testudineus
ENSCLAG00000011434	UPF2	100	86.399	ENSAPLG00000010287	UPF2	90	90.704	Anas_platyrhynchos
ENSCLAG00000011434	UPF2	100	91.345	ENSACAG00000009259	UPF2	100	91.660	Anolis_carolinensis
ENSCLAG00000011434	UPF2	99	87.884	ENSANAG00000028451	UPF2	99	85.917	Aotus_nancymaae
ENSCLAG00000011434	UPF2	100	81.187	ENSACLG00000012696	UPF2	100	81.889	Astatotilapia_calliptera
ENSCLAG00000011434	UPF2	99	82.629	ENSAMXG00000013700	UPF2	99	82.003	Astyanax_mexicanus
ENSCLAG00000011434	UPF2	100	97.640	ENSBTAG00000000288	UPF2	100	97.640	Bos_taurus
ENSCLAG00000011434	UPF2	100	97.168	ENSCJAG00000020685	UPF2	100	97.168	Callithrix_jacchus
ENSCLAG00000011434	UPF2	100	97.876	ENSCAFG00000004839	UPF2	100	97.876	Canis_familiaris
ENSCLAG00000011434	UPF2	99	95.429	ENSCAFG00020005882	UPF2	100	95.429	Canis_lupus_dingo
ENSCLAG00000011434	UPF2	100	97.718	ENSCHIG00000020359	UPF2	100	97.718	Capra_hircus
ENSCLAG00000011434	UPF2	100	96.932	ENSTSYG00000000935	UPF2	97	100.000	Carlito_syrichta
ENSCLAG00000011434	UPF2	91	88.038	ENSCAPG00000016658	UPF2	95	87.608	Cavia_aperea
ENSCLAG00000011434	UPF2	99	97.304	ENSCPOG00000008809	UPF2	100	97.304	Cavia_porcellus
ENSCLAG00000011434	UPF2	100	91.660	ENSCCAG00000035991	UPF2	100	91.660	Cebus_capucinus
ENSCLAG00000011434	UPF2	100	97.327	ENSCATG00000032679	UPF2	100	97.327	Cercocebus_atys
ENSCLAG00000011434	UPF2	100	97.327	ENSCSAG00000013372	UPF2	100	97.327	Chlorocebus_sabaeus
ENSCLAG00000011434	UPF2	87	99.107	ENSCHOG00000000422	UPF2	89	99.107	Choloepus_hoffmanni
ENSCLAG00000011434	UPF2	99	92.508	ENSCPBG00000027823	UPF2	100	92.271	Chrysemys_picta_bellii
ENSCLAG00000011434	UPF2	79	48.766	ENSCSAVG00000007772	-	79	50.127	Ciona_savignyi
ENSCLAG00000011434	UPF2	99	90.312	ENSCANG00000040396	UPF2	100	90.165	Colobus_angolensis_palliatus
ENSCLAG00000011434	UPF2	100	97.797	ENSCGRG00001019347	Upf2	100	97.797	Cricetulus_griseus_chok1gshd
ENSCLAG00000011434	UPF2	100	97.797	ENSCGRG00000017993	Upf2	100	97.797	Cricetulus_griseus_crigri
ENSCLAG00000011434	UPF2	91	80.862	ENSCSEG00000003520	UPF2	99	76.972	Cynoglossus_semilaevis
ENSCLAG00000011434	UPF2	99	81.525	ENSCVAG00000006167	UPF2	100	81.053	Cyprinodon_variegatus
ENSCLAG00000011434	UPF2	100	97.561	ENSDNOG00000018160	UPF2	100	97.561	Dasypus_novemcinctus
ENSCLAG00000011434	UPF2	100	97.954	ENSDORG00000002478	Upf2	100	97.954	Dipodomys_ordii
ENSCLAG00000011434	UPF2	89	36.221	FBgn0029992	Upf2	82	43.860	Drosophila_melanogaster
ENSCLAG00000011434	UPF2	72	100.000	ENSETEG00000011583	-	66	100.000	Echinops_telfairi
ENSCLAG00000011434	UPF2	69	68.507	ENSEBUG00000012448	-	87	72.483	Eptatretus_burgeri
ENSCLAG00000011434	UPF2	100	97.795	ENSEASG00005019274	UPF2	100	97.795	Equus_asinus_asinus
ENSCLAG00000011434	UPF2	100	97.874	ENSECAG00000017022	UPF2	100	97.874	Equus_caballus
ENSCLAG00000011434	UPF2	82	94.249	ENSEEUG00000007819	UPF2	82	94.249	Erinaceus_europaeus
ENSCLAG00000011434	UPF2	99	80.766	ENSELUG00000012014	UPF2	100	80.793	Esox_lucius
ENSCLAG00000011434	UPF2	100	99.448	ENSFCAG00000005785	UPF2	100	97.718	Felis_catus
ENSCLAG00000011434	UPF2	100	92.683	ENSFALG00000001889	UPF2	98	93.155	Ficedula_albicollis
ENSCLAG00000011434	UPF2	100	98.661	ENSFDAG00000014348	UPF2	100	98.661	Fukomys_damarensis
ENSCLAG00000011434	UPF2	99	82.041	ENSFHEG00000009826	UPF2	99	81.696	Fundulus_heteroclitus
ENSCLAG00000011434	UPF2	91	83.679	ENSGMOG00000005557	UPF2	100	79.499	Gadus_morhua
ENSCLAG00000011434	UPF2	100	93.003	ENSGALG00000033772	UPF2	100	92.060	Gallus_gallus
ENSCLAG00000011434	UPF2	100	80.172	ENSGAFG00000020867	UPF2	100	81.030	Gambusia_affinis
ENSCLAG00000011434	UPF2	91	84.383	ENSGACG00000001080	UPF2	100	81.470	Gasterosteus_aculeatus
ENSCLAG00000011434	UPF2	100	92.211	ENSGAGG00000002700	UPF2	100	92.604	Gopherus_agassizii
ENSCLAG00000011434	UPF2	100	97.091	ENSGGOG00000001479	UPF2	100	97.091	Gorilla_gorilla
ENSCLAG00000011434	UPF2	100	81.030	ENSHBUG00000004249	UPF2	100	81.861	Haplochromis_burtoni
ENSCLAG00000011434	UPF2	100	98.976	ENSHGLG00000015176	-	100	98.976	Heterocephalus_glaber_female
ENSCLAG00000011434	UPF2	99	87.943	ENSHGLG00000003822	-	99	86.919	Heterocephalus_glaber_female
ENSCLAG00000011434	UPF2	99	96.057	ENSHGLG00100010036	UPF2	100	96.057	Heterocephalus_glaber_male
ENSCLAG00000011434	UPF2	100	79.876	ENSHCOG00000004025	UPF2	99	79.860	Hippocampus_comes
ENSCLAG00000011434	UPF2	100	80.811	ENSIPUG00000015524	UPF2	100	81.343	Ictalurus_punctatus
ENSCLAG00000011434	UPF2	100	98.269	ENSSTOG00000013075	UPF2	100	98.269	Ictidomys_tridecemlineatus
ENSCLAG00000011434	UPF2	100	96.696	ENSJJAG00000004913	Upf2	100	96.696	Jaculus_jaculus
ENSCLAG00000011434	UPF2	99	82.041	ENSKMAG00000001071	UPF2	99	82.078	Kryptolebias_marmoratus
ENSCLAG00000011434	UPF2	100	81.882	ENSLBEG00000016394	-	99	81.931	Labrus_bergylta
ENSCLAG00000011434	UPF2	80	81.219	ENSLBEG00000000728	-	93	81.318	Labrus_bergylta
ENSCLAG00000011434	UPF2	99	78.918	ENSLACG00000015945	UPF2	100	78.762	Latimeria_chalumnae
ENSCLAG00000011434	UPF2	99	85.185	ENSLOCG00000015698	UPF2	100	85.106	Lepisosteus_oculatus
ENSCLAG00000011434	UPF2	100	97.248	ENSMFAG00000043865	UPF2	100	97.248	Macaca_fascicularis
ENSCLAG00000011434	UPF2	100	97.248	ENSMMUG00000008241	UPF2	100	97.248	Macaca_mulatta
ENSCLAG00000011434	UPF2	81	95.610	ENSMNEG00000008062	UPF2	99	94.907	Macaca_nemestrina
ENSCLAG00000011434	UPF2	95	98.309	ENSMLEG00000036120	UPF2	100	98.309	Mandrillus_leucophaeus
ENSCLAG00000011434	UPF2	100	81.556	ENSMAMG00000018276	UPF2	100	81.606	Mastacembelus_armatus
ENSCLAG00000011434	UPF2	100	81.187	ENSMZEG00005021595	UPF2	100	81.889	Maylandia_zebra
ENSCLAG00000011434	UPF2	99	92.447	ENSMGAG00000004573	UPF2	99	91.660	Meleagris_gallopavo
ENSCLAG00000011434	UPF2	100	95.515	ENSMAUG00000016512	Upf2	100	95.515	Mesocricetus_auratus
ENSCLAG00000011434	UPF2	95	99.490	ENSMICG00000001716	UPF2	99	99.482	Microcebus_murinus
ENSCLAG00000011434	UPF2	100	96.929	ENSMOCG00000008263	Upf2	100	96.929	Microtus_ochrogaster
ENSCLAG00000011434	UPF2	99	79.359	ENSMMOG00000006528	UPF2	100	79.108	Mola_mola
ENSCLAG00000011434	UPF2	100	94.886	ENSMODG00000016794	UPF2	100	95.358	Monodelphis_domestica
ENSCLAG00000011434	UPF2	99	81.299	ENSMALG00000002663	UPF2	100	81.505	Monopterus_albus
ENSCLAG00000011434	UPF2	100	97.325	MGP_CAROLIEiJ_G0023157	Upf2	100	97.642	Mus_caroli
ENSCLAG00000011434	UPF2	100	97.168	ENSMUSG00000043241	Upf2	100	97.168	Mus_musculus
ENSCLAG00000011434	UPF2	100	97.089	MGP_PahariEiJ_G0019217	Upf2	100	97.089	Mus_pahari
ENSCLAG00000011434	UPF2	100	97.404	MGP_SPRETEiJ_G0024075	Upf2	100	97.404	Mus_spretus
ENSCLAG00000011434	UPF2	100	97.718	ENSMPUG00000001064	UPF2	100	97.718	Mustela_putorius_furo
ENSCLAG00000011434	UPF2	99	97.172	ENSMLUG00000000228	UPF2	100	97.172	Myotis_lucifugus
ENSCLAG00000011434	UPF2	100	81.187	ENSNBRG00000013629	UPF2	100	81.889	Neolamprologus_brichardi
ENSCLAG00000011434	UPF2	100	97.091	ENSNLEG00000012058	UPF2	100	97.091	Nomascus_leucogenys
ENSCLAG00000011434	UPF2	51	97.927	ENSMEUG00000002180	-	54	97.927	Notamacropus_eugenii
ENSCLAG00000011434	UPF2	82	100.000	ENSOPRG00000006801	-	82	100.000	Ochotona_princeps
ENSCLAG00000011434	UPF2	100	98.740	ENSODEG00000001290	UPF2	100	98.740	Octodon_degus
ENSCLAG00000011434	UPF2	100	81.187	ENSONIG00000017991	UPF2	100	81.889	Oreochromis_niloticus
ENSCLAG00000011434	UPF2	99	97.020	ENSOCUG00000006230	UPF2	100	97.020	Oryctolagus_cuniculus
ENSCLAG00000011434	UPF2	100	81.323	ENSORLG00000017189	UPF2	100	81.030	Oryzias_latipes
ENSCLAG00000011434	UPF2	100	81.323	ENSORLG00020005969	UPF2	100	81.030	Oryzias_latipes_hni
ENSCLAG00000011434	UPF2	100	81.323	ENSORLG00015005713	UPF2	100	81.030	Oryzias_latipes_hsok
ENSCLAG00000011434	UPF2	99	78.081	ENSOMEG00000023420	UPF2	98	78.091	Oryzias_melastigma
ENSCLAG00000011434	UPF2	100	97.089	ENSOGAG00000005796	UPF2	100	97.089	Otolemur_garnettii
ENSCLAG00000011434	UPF2	100	97.565	ENSOARG00000014587	UPF2	100	97.565	Ovis_aries
ENSCLAG00000011434	UPF2	99	92.494	ENSPPAG00000037953	UPF2	100	92.441	Pan_paniscus
ENSCLAG00000011434	UPF2	100	97.718	ENSPPRG00000000690	UPF2	100	97.718	Panthera_pardus
ENSCLAG00000011434	UPF2	100	97.718	ENSPTIG00000008867	UPF2	100	97.718	Panthera_tigris_altaica
ENSCLAG00000011434	UPF2	100	97.091	ENSPTRG00000002291	UPF2	100	97.091	Pan_troglodytes
ENSCLAG00000011434	UPF2	100	97.248	ENSPANG00000023399	UPF2	100	97.248	Papio_anubis
ENSCLAG00000011434	UPF2	100	80.967	ENSPKIG00000025502	UPF2	100	80.031	Paramormyrops_kingsleyae
ENSCLAG00000011434	UPF2	59	91.102	ENSPSIG00000015158	UPF2	95	91.633	Pelodiscus_sinensis
ENSCLAG00000011434	UPF2	99	78.616	ENSPMGG00000005259	UPF2	100	79.245	Periophthalmus_magnuspinnatus
ENSCLAG00000011434	UPF2	93	95.044	ENSPEMG00000015731	Upf2	99	96.501	Peromyscus_maniculatus_bairdii
ENSCLAG00000011434	UPF2	100	94.493	ENSPCIG00000006656	UPF2	100	94.729	Phascolarctos_cinereus
ENSCLAG00000011434	UPF2	100	80.328	ENSPFOG00000017118	UPF2	100	81.187	Poecilia_formosa
ENSCLAG00000011434	UPF2	100	80.328	ENSPLAG00000005094	UPF2	100	81.187	Poecilia_latipinna
ENSCLAG00000011434	UPF2	100	80.328	ENSPMEG00000017009	UPF2	100	81.187	Poecilia_mexicana
ENSCLAG00000011434	UPF2	99	80.329	ENSPREG00000021880	UPF2	100	81.426	Poecilia_reticulata
ENSCLAG00000011434	UPF2	66	98.445	ENSPPYG00000002089	-	100	98.445	Pongo_abelii
ENSCLAG00000011434	UPF2	100	82.376	ENSPCAG00000000684	UPF2	100	82.848	Procavia_capensis
ENSCLAG00000011434	UPF2	99	94.405	ENSPCOG00000021656	UPF2	100	94.484	Propithecus_coquereli
ENSCLAG00000011434	UPF2	100	89.465	ENSPVAG00000017286	UPF2	100	89.858	Pteropus_vampyrus
ENSCLAG00000011434	UPF2	99	78.733	ENSPNYG00000017096	UPF2	100	79.437	Pundamilia_nyererei
ENSCLAG00000011434	UPF2	100	82.761	ENSPNAG00000009357	UPF2	100	82.215	Pygocentrus_nattereri
ENSCLAG00000011434	UPF2	99	90.659	ENSRNOG00000023593	Upf2	100	100.000	Rattus_norvegicus
ENSCLAG00000011434	UPF2	99	96.217	ENSRBIG00000037780	UPF2	100	96.217	Rhinopithecus_bieti
ENSCLAG00000011434	UPF2	100	97.170	ENSRROG00000043547	UPF2	100	97.170	Rhinopithecus_roxellana
ENSCLAG00000011434	UPF2	100	97.010	ENSSBOG00000020012	UPF2	100	97.010	Saimiri_boliviensis_boliviensis
ENSCLAG00000011434	UPF2	100	81.591	ENSSFOG00015023788	upf2	100	82.995	Scleropages_formosus
ENSCLAG00000011434	UPF2	90	82.567	ENSSMAG00000007637	UPF2	100	79.147	Scophthalmus_maximus
ENSCLAG00000011434	UPF2	100	82.123	ENSSDUG00000017244	UPF2	99	82.279	Seriola_dumerili
ENSCLAG00000011434	UPF2	99	80.643	ENSSLDG00000016866	UPF2	100	80.721	Seriola_lalandi_dorsalis
ENSCLAG00000011434	UPF2	100	93.784	ENSSARG00000008615	UPF2	100	95.358	Sorex_araneus
ENSCLAG00000011434	UPF2	99	89.055	ENSSPUG00000014544	UPF2	99	89.449	Sphenodon_punctatus
ENSCLAG00000011434	UPF2	68	98.274	ENSSSCG00000011117	-	100	98.274	Sus_scrofa
ENSCLAG00000011434	UPF2	99	92.508	ENSTGUG00000002163	-	100	92.981	Taeniopygia_guttata
ENSCLAG00000011434	UPF2	100	81.684	ENSTRUG00000007519	UPF2	99	81.655	Takifugu_rubripes
ENSCLAG00000011434	UPF2	100	79.922	ENSTNIG00000004453	UPF2	100	79.579	Tetraodon_nigroviridis
ENSCLAG00000011434	UPF2	93	89.416	ENSTBEG00000012679	UPF2	93	88.992	Tupaia_belangeri
ENSCLAG00000011434	UPF2	100	97.480	ENSTTRG00000016388	UPF2	100	97.480	Tursiops_truncatus
ENSCLAG00000011434	UPF2	94	100.000	ENSUAMG00000023560	UPF2	99	100.000	Ursus_americanus
ENSCLAG00000011434	UPF2	100	98.033	ENSUMAG00000012953	UPF2	95	98.033	Ursus_maritimus
ENSCLAG00000011434	UPF2	85	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSCLAG00000011434	UPF2	100	97.797	ENSVVUG00000006166	UPF2	100	97.797	Vulpes_vulpes
ENSCLAG00000011434	UPF2	100	82.538	ENSXETG00000033103	UPF2	100	81.317	Xenopus_tropicalis
ENSCLAG00000011434	UPF2	99	79.906	ENSXCOG00000011604	UPF2	100	81.157	Xiphophorus_couchianus
ENSCLAG00000011434	UPF2	100	80.250	ENSXMAG00000017209	UPF2	100	81.109	Xiphophorus_maculatus