EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCLAG00000011796 (Gene tree)
Gene ID: 102024672
Gene Symbol: SND1
Alias: TDRD11|p100
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Plus strand
Length: 461599 bases
Position: chrJH721939.1:8692674-9154272
Accession: 102024672
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000017184	TUDOR	PF00567.24	5.1e-28	1	1
ENSCLAP00000017184	SNase	PF00565.17	3.1e-69	1	5
ENSCLAP00000017184	SNase	PF00565.17	3.1e-69	2	5
ENSCLAP00000017184	SNase	PF00565.17	3.1e-69	3	5
ENSCLAP00000017184	SNase	PF00565.17	3.1e-69	4	5
ENSCLAP00000017184	SNase	PF00565.17	3.1e-69	5	5
ENSCLAP00000017185	SNase	PF00565.17	5.7e-49	1	3
ENSCLAP00000017185	SNase	PF00565.17	5.7e-49	2	3
ENSCLAP00000017185	SNase	PF00565.17	5.7e-49	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000017353	SND1-201	5635	XM_005402366	ENSCLAP00000017184	910 (aa)	XP_005402423	UPI00038EA4B4
ENSCLAT00000017354	SND1-202	1827	-	ENSCLAP00000017185	609 (aa)	-	-

Gene Model

Click here to download ENSCLAG00000011796's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000011796's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000011796	SND1	100	98.022	ENSG00000197157	SND1	100	98.022	Homo_sapiens
ENSCLAG00000011796	SND1	100	83.772	ENSAPOG00000017599	snd1	99	84.650	Acanthochromis_polyacanthus
ENSCLAG00000011796	SND1	100	97.807	ENSAMEG00000004664	SND1	94	97.807	Ailuropoda_melanoleuca
ENSCLAG00000011796	SND1	98	82.083	ENSACIG00000003551	snd1	99	81.960	Amphilophus_citrinellus
ENSCLAG00000011796	SND1	100	83.662	ENSAOCG00000014166	snd1	99	84.538	Amphiprion_ocellaris
ENSCLAG00000011796	SND1	100	83.662	ENSAPEG00000007067	snd1	99	84.538	Amphiprion_percula
ENSCLAG00000011796	SND1	98	85.570	ENSATEG00000018475	snd1	88	84.265	Anabas_testudineus
ENSCLAG00000011796	SND1	100	98.242	ENSANAG00000034463	SND1	100	98.242	Aotus_nancymaae
ENSCLAG00000011796	SND1	100	83.333	ENSACLG00000022897	snd1	99	84.187	Astatotilapia_calliptera
ENSCLAG00000011796	SND1	97	86.509	ENSAMXG00000016318	snd1	98	84.744	Astyanax_mexicanus
ENSCLAG00000011796	SND1	100	98.242	ENSBTAG00000010692	SND1	100	98.242	Bos_taurus
ENSCLAG00000011796	SND1	98	51.656	WBGene00006626	tsn-1	98	47.530	Caenorhabditis_elegans
ENSCLAG00000011796	SND1	100	98.022	ENSCJAG00000017668	SND1	100	98.022	Callithrix_jacchus
ENSCLAG00000011796	SND1	100	98.242	ENSCAFG00000001700	SND1	100	98.242	Canis_familiaris
ENSCLAG00000011796	SND1	100	98.242	ENSCAFG00020021639	SND1	100	98.242	Canis_lupus_dingo
ENSCLAG00000011796	SND1	100	98.571	ENSCHIG00000023390	SND1	100	98.571	Capra_hircus
ENSCLAG00000011796	SND1	94	98.087	ENSTSYG00000004979	SND1	96	98.944	Carlito_syrichta
ENSCLAG00000011796	SND1	99	85.222	ENSCAPG00000010677	SND1	98	85.206	Cavia_aperea
ENSCLAG00000011796	SND1	100	98.352	ENSCPOG00000006251	SND1	100	98.352	Cavia_porcellus
ENSCLAG00000011796	SND1	100	98.352	ENSCCAG00000036847	SND1	100	98.352	Cebus_capucinus
ENSCLAG00000011796	SND1	100	98.242	ENSCATG00000035214	SND1	100	98.242	Cercocebus_atys
ENSCLAG00000011796	SND1	100	98.242	ENSCSAG00000010182	SND1	100	98.242	Chlorocebus_sabaeus
ENSCLAG00000011796	SND1	95	73.545	ENSCHOG00000002218	SND1	86	88.235	Choloepus_hoffmanni
ENSCLAG00000011796	SND1	100	91.868	ENSCPBG00000018094	SND1	99	92.531	Chrysemys_picta_bellii
ENSCLAG00000011796	SND1	94	61.604	ENSCING00000000524	-	98	56.700	Ciona_intestinalis
ENSCLAG00000011796	SND1	96	62.669	ENSCSAVG00000008807	-	99	57.901	Ciona_savignyi
ENSCLAG00000011796	SND1	100	98.242	ENSCANG00000035119	SND1	100	98.242	Colobus_angolensis_palliatus
ENSCLAG00000011796	SND1	100	97.143	ENSCGRG00001022514	Snd1	100	97.143	Cricetulus_griseus_chok1gshd
ENSCLAG00000011796	SND1	97	97.285	ENSCGRG00000012277	Snd1	99	97.285	Cricetulus_griseus_crigri
ENSCLAG00000011796	SND1	99	83.131	ENSCSEG00000008661	snd1	98	84.004	Cynoglossus_semilaevis
ENSCLAG00000011796	SND1	98	86.242	ENSCVAG00000010316	snd1	100	83.678	Cyprinodon_variegatus
ENSCLAG00000011796	SND1	98	86.265	ENSDARG00000006766	snd1	97	87.410	Danio_rerio
ENSCLAG00000011796	SND1	97	95.265	ENSDNOG00000006795	SND1	100	95.265	Dasypus_novemcinctus
ENSCLAG00000011796	SND1	100	98.681	ENSDORG00000000336	Snd1	100	98.681	Dipodomys_ordii
ENSCLAG00000011796	SND1	94	54.040	FBgn0035121	Tudor-SN	97	51.204	Drosophila_melanogaster
ENSCLAG00000011796	SND1	90	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSCLAG00000011796	SND1	85	66.667	ENSEBUG00000014201	-	84	75.956	Eptatretus_burgeri
ENSCLAG00000011796	SND1	98	98.822	ENSEASG00005008513	SND1	100	96.760	Equus_asinus_asinus
ENSCLAG00000011796	SND1	100	98.352	ENSECAG00000011451	SND1	100	98.352	Equus_caballus
ENSCLAG00000011796	SND1	99	96.459	ENSEEUG00000014737	SND1	100	86.374	Erinaceus_europaeus
ENSCLAG00000011796	SND1	98	83.278	ENSELUG00000001805	snd1	95	82.943	Esox_lucius
ENSCLAG00000011796	SND1	100	98.242	ENSFCAG00000008289	SND1	100	98.242	Felis_catus
ENSCLAG00000011796	SND1	100	98.462	ENSFDAG00000015881	SND1	100	98.462	Fukomys_damarensis
ENSCLAG00000011796	SND1	96	86.195	ENSFHEG00000004093	snd1	97	84.848	Fundulus_heteroclitus
ENSCLAG00000011796	SND1	64	74.011	ENSGMOG00000018932	snd1	64	74.011	Gadus_morhua
ENSCLAG00000011796	SND1	53	95.580	ENSGALG00000052684	-	50	93.583	Gallus_gallus
ENSCLAG00000011796	SND1	100	84.320	ENSGAFG00000008421	snd1	99	85.231	Gambusia_affinis
ENSCLAG00000011796	SND1	100	54.072	ENSGACG00000019793	snd1	98	54.596	Gasterosteus_aculeatus
ENSCLAG00000011796	SND1	100	98.242	ENSGGOG00000009614	SND1	100	98.242	Gorilla_gorilla
ENSCLAG00000011796	SND1	99	83.700	ENSHBUG00000019135	snd1	99	84.187	Haplochromis_burtoni
ENSCLAG00000011796	SND1	100	98.194	ENSHGLG00000003618	SND1	100	98.194	Heterocephalus_glaber_female
ENSCLAG00000011796	SND1	99	97.680	ENSHGLG00100012449	SND1	100	97.680	Heterocephalus_glaber_male
ENSCLAG00000011796	SND1	98	85.235	ENSHCOG00000005266	snd1	98	84.228	Hippocampus_comes
ENSCLAG00000011796	SND1	98	85.284	ENSIPUG00000013279	snd1	98	83.630	Ictalurus_punctatus
ENSCLAG00000011796	SND1	100	98.681	ENSSTOG00000002140	SND1	100	98.681	Ictidomys_tridecemlineatus
ENSCLAG00000011796	SND1	100	98.681	ENSJJAG00000009561	Snd1	100	98.681	Jaculus_jaculus
ENSCLAG00000011796	SND1	98	85.906	ENSKMAG00000016997	snd1	98	84.899	Kryptolebias_marmoratus
ENSCLAG00000011796	SND1	100	85.067	ENSLBEG00000013563	snd1	99	83.537	Labrus_bergylta
ENSCLAG00000011796	SND1	99	85.447	ENSLOCG00000015537	snd1	98	85.447	Lepisosteus_oculatus
ENSCLAG00000011796	SND1	100	97.253	ENSLAFG00000009696	SND1	100	97.253	Loxodonta_africana
ENSCLAG00000011796	SND1	100	98.242	ENSMFAG00000038114	SND1	100	98.242	Macaca_fascicularis
ENSCLAG00000011796	SND1	99	99.323	ENSMMUG00000015432	SND1	100	98.242	Macaca_mulatta
ENSCLAG00000011796	SND1	100	98.242	ENSMNEG00000039808	SND1	100	98.305	Macaca_nemestrina
ENSCLAG00000011796	SND1	100	98.132	ENSMLEG00000029040	SND1	100	98.192	Mandrillus_leucophaeus
ENSCLAG00000011796	SND1	97	86.294	ENSMAMG00000011739	snd1	98	84.598	Mastacembelus_armatus
ENSCLAG00000011796	SND1	100	83.333	ENSMZEG00005005681	snd1	99	84.187	Maylandia_zebra
ENSCLAG00000011796	SND1	100	98.242	ENSMICG00000000097	SND1	100	98.242	Microcebus_murinus
ENSCLAG00000011796	SND1	100	97.692	ENSMOCG00000005040	Snd1	100	97.692	Microtus_ochrogaster
ENSCLAG00000011796	SND1	100	83.443	ENSMMOG00000001795	snd1	99	84.316	Mola_mola
ENSCLAG00000011796	SND1	99	95.206	ENSMODG00000015182	SND1	99	95.206	Monodelphis_domestica
ENSCLAG00000011796	SND1	100	83.333	ENSMALG00000012071	snd1	99	84.093	Monopterus_albus
ENSCLAG00000011796	SND1	100	97.582	MGP_CAROLIEiJ_G0028159	Snd1	100	97.582	Mus_caroli
ENSCLAG00000011796	SND1	100	97.363	ENSMUSG00000001424	Snd1	100	97.363	Mus_musculus
ENSCLAG00000011796	SND1	100	97.473	MGP_PahariEiJ_G0021917	Snd1	100	97.808	Mus_pahari
ENSCLAG00000011796	SND1	100	97.582	MGP_SPRETEiJ_G0029159	Snd1	100	97.582	Mus_spretus
ENSCLAG00000011796	SND1	100	97.912	ENSMPUG00000006545	SND1	100	97.912	Mustela_putorius_furo
ENSCLAG00000011796	SND1	97	96.760	ENSMLUG00000017130	SND1	99	96.760	Myotis_lucifugus
ENSCLAG00000011796	SND1	100	98.022	ENSNGAG00000011186	Snd1	100	98.022	Nannospalax_galili
ENSCLAG00000011796	SND1	100	83.224	ENSNBRG00000006681	snd1	99	84.076	Neolamprologus_brichardi
ENSCLAG00000011796	SND1	99	99.157	ENSNLEG00000012263	SND1	100	98.305	Nomascus_leucogenys
ENSCLAG00000011796	SND1	93	100.000	ENSOPRG00000013405	SND1	92	100.000	Ochotona_princeps
ENSCLAG00000011796	SND1	100	98.791	ENSODEG00000011502	SND1	100	98.791	Octodon_degus
ENSCLAG00000011796	SND1	100	83.224	ENSONIG00000011481	snd1	96	84.076	Oreochromis_niloticus
ENSCLAG00000011796	SND1	98	94.482	ENSOANG00000000817	SND1	99	93.868	Ornithorhynchus_anatinus
ENSCLAG00000011796	SND1	100	97.473	ENSOCUG00000001620	SND1	100	97.473	Oryctolagus_cuniculus
ENSCLAG00000011796	SND1	95	87.543	ENSORLG00000015201	snd1	98	83.781	Oryzias_latipes
ENSCLAG00000011796	SND1	95	87.543	ENSORLG00020013991	snd1	98	83.893	Oryzias_latipes_hni
ENSCLAG00000011796	SND1	95	87.543	ENSORLG00015012436	snd1	98	83.893	Oryzias_latipes_hsok
ENSCLAG00000011796	SND1	98	85.067	ENSOMEG00000006406	snd1	98	84.116	Oryzias_melastigma
ENSCLAG00000011796	SND1	100	97.917	ENSOGAG00000013356	SND1	94	97.917	Otolemur_garnettii
ENSCLAG00000011796	SND1	94	99.297	ENSOARG00000002149	SND1	100	95.819	Ovis_aries
ENSCLAG00000011796	SND1	100	98.132	ENSPPAG00000042947	SND1	100	98.132	Pan_paniscus
ENSCLAG00000011796	SND1	100	98.242	ENSPPRG00000004494	SND1	100	98.242	Panthera_pardus
ENSCLAG00000011796	SND1	100	98.132	ENSPTIG00000014214	SND1	100	98.132	Panthera_tigris_altaica
ENSCLAG00000011796	SND1	100	98.132	ENSPTRG00000023911	SND1	100	98.132	Pan_troglodytes
ENSCLAG00000011796	SND1	98	99.158	ENSPANG00000011997	SND1	99	98.303	Papio_anubis
ENSCLAG00000011796	SND1	96	84.602	ENSPKIG00000023494	snd1	98	81.798	Paramormyrops_kingsleyae
ENSCLAG00000011796	SND1	91	86.076	ENSPMGG00000003629	snd1	100	83.114	Periophthalmus_magnuspinnatus
ENSCLAG00000011796	SND1	100	97.802	ENSPEMG00000010240	Snd1	100	97.802	Peromyscus_maniculatus_bairdii
ENSCLAG00000011796	SND1	93	79.335	ENSPMAG00000007915	-	99	73.785	Petromyzon_marinus
ENSCLAG00000011796	SND1	99	95.652	ENSPCIG00000011561	SND1	99	95.652	Phascolarctos_cinereus
ENSCLAG00000011796	SND1	100	83.772	ENSPFOG00000001557	snd1	99	84.650	Poecilia_formosa
ENSCLAG00000011796	SND1	98	85.906	ENSPLAG00000018459	snd1	96	84.650	Poecilia_latipinna
ENSCLAG00000011796	SND1	98	86.242	ENSPMEG00000006803	snd1	99	85.095	Poecilia_mexicana
ENSCLAG00000011796	SND1	98	86.242	ENSPREG00000002189	snd1	99	84.983	Poecilia_reticulata
ENSCLAG00000011796	SND1	98	98.990	ENSPPYG00000017972	SND1	100	98.015	Pongo_abelii
ENSCLAG00000011796	SND1	100	86.044	ENSPCAG00000011305	SND1	99	85.953	Procavia_capensis
ENSCLAG00000011796	SND1	100	98.022	ENSPCOG00000026791	SND1	100	98.079	Propithecus_coquereli
ENSCLAG00000011796	SND1	100	96.484	ENSPVAG00000013945	SND1	100	96.484	Pteropus_vampyrus
ENSCLAG00000011796	SND1	100	83.333	ENSPNYG00000000932	snd1	99	84.187	Pundamilia_nyererei
ENSCLAG00000011796	SND1	98	85.786	ENSPNAG00000001206	snd1	98	84.667	Pygocentrus_nattereri
ENSCLAG00000011796	SND1	99	97.137	ENSRNOG00000031173	Snd1	100	96.158	Rattus_norvegicus
ENSCLAG00000011796	SND1	95	99.060	ENSRBIG00000027782	-	93	99.240	Rhinopithecus_bieti
ENSCLAG00000011796	SND1	100	98.242	ENSRROG00000033020	SND1	100	98.242	Rhinopithecus_roxellana
ENSCLAG00000011796	SND1	100	98.242	ENSSBOG00000032461	SND1	100	98.242	Saimiri_boliviensis_boliviensis
ENSCLAG00000011796	SND1	98	92.455	ENSSHAG00000015359	SND1	100	92.455	Sarcophilus_harrisii
ENSCLAG00000011796	SND1	100	82.372	ENSSFOG00015001103	snd1	98	83.463	Scleropages_formosus
ENSCLAG00000011796	SND1	98	83.781	ENSSMAG00000001932	snd1	93	83.781	Scophthalmus_maximus
ENSCLAG00000011796	SND1	100	83.662	ENSSDUG00000002699	snd1	92	84.538	Seriola_dumerili
ENSCLAG00000011796	SND1	100	76.425	ENSSLDG00000001950	snd1	98	77.197	Seriola_lalandi_dorsalis
ENSCLAG00000011796	SND1	93	91.549	ENSSARG00000004877	SND1	92	98.113	Sorex_araneus
ENSCLAG00000011796	SND1	93	87.695	ENSSPUG00000017586	SND1	96	87.826	Sphenodon_punctatus
ENSCLAG00000011796	SND1	98	84.772	ENSSPAG00000021398	snd1	96	86.736	Stegastes_partitus
ENSCLAG00000011796	SND1	100	98.352	ENSSSCG00000016590	SND1	100	98.352	Sus_scrofa
ENSCLAG00000011796	SND1	98	87.143	ENSTRUG00000014067	snd1	99	83.537	Takifugu_rubripes
ENSCLAG00000011796	SND1	98	85.570	ENSTNIG00000011019	snd1	99	84.205	Tetraodon_nigroviridis
ENSCLAG00000011796	SND1	93	92.571	ENSTBEG00000003999	SND1	100	92.571	Tupaia_belangeri
ENSCLAG00000011796	SND1	100	93.626	ENSTTRG00000006059	SND1	100	93.626	Tursiops_truncatus
ENSCLAG00000011796	SND1	91	88.630	ENSUAMG00000002820	-	86	89.247	Ursus_americanus
ENSCLAG00000011796	SND1	91	97.909	ENSUAMG00000005604	-	93	97.909	Ursus_americanus
ENSCLAG00000011796	SND1	100	98.022	ENSUMAG00000005960	SND1	100	98.022	Ursus_maritimus
ENSCLAG00000011796	SND1	93	87.478	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSCLAG00000011796	SND1	100	98.022	ENSVVUG00000007226	SND1	100	98.022	Vulpes_vulpes
ENSCLAG00000011796	SND1	93	91.197	ENSXETG00000023043	snd1	100	84.783	Xenopus_tropicalis
ENSCLAG00000011796	SND1	90	87.342	ENSXCOG00000013629	snd1	99	81.591	Xiphophorus_couchianus
ENSCLAG00000011796	SND1	100	84.320	ENSXMAG00000011469	snd1	99	85.206	Xiphophorus_maculatus