EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCLAG00000012166 (Gene tree)
Gene ID: 102003833
Gene Symbol: CPSF1
Alias: CPSF160
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Minus strand
Length: 15020 bases
Position: chrJH721914.1:3024406-3039425
Accession: 102003833
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000017737	CPSF_A	PF03178.15	2.3e-92	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000017912	CPSF1-201	5021	XM_005395878	ENSCLAP00000017737	1441 (aa)	XP_005395935	UPI00038ED5D1

Gene Model

Click here to download ENSCLAG00000012166's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000012166's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000012166	CPSF1	100	96.604	ENSG00000071894	CPSF1	100	96.604	Homo_sapiens
ENSCLAG00000012166	CPSF1	100	78.093	ENSAPOG00000019621	cpsf1	100	78.229	Acanthochromis_polyacanthus
ENSCLAG00000012166	CPSF1	97	95.068	ENSAMEG00000005557	CPSF1	100	95.068	Ailuropoda_melanoleuca
ENSCLAG00000012166	CPSF1	100	78.878	ENSACIG00000006112	cpsf1	100	79.086	Amphilophus_citrinellus
ENSCLAG00000012166	CPSF1	100	79.477	ENSAOCG00000007120	cpsf1	100	79.683	Amphiprion_ocellaris
ENSCLAG00000012166	CPSF1	100	79.945	ENSAPEG00000005755	cpsf1	100	80.083	Amphiprion_percula
ENSCLAG00000012166	CPSF1	100	78.003	ENSATEG00000011097	cpsf1	100	78.340	Anabas_testudineus
ENSCLAG00000012166	CPSF1	93	81.683	ENSACAG00000009655	CPSF1	100	81.683	Anolis_carolinensis
ENSCLAG00000012166	CPSF1	100	96.602	ENSANAG00000036514	CPSF1	100	96.602	Aotus_nancymaae
ENSCLAG00000012166	CPSF1	100	77.770	ENSACLG00000012231	cpsf1	99	79.225	Astatotilapia_calliptera
ENSCLAG00000012166	CPSF1	100	73.859	ENSAMXG00000008485	cpsf1	100	73.029	Astyanax_mexicanus
ENSCLAG00000012166	CPSF1	100	94.894	ENSBTAG00000008355	CPSF1	100	95.245	Bos_taurus
ENSCLAG00000012166	CPSF1	100	32.237	WBGene00022301	cpsf-1	100	40.449	Caenorhabditis_elegans
ENSCLAG00000012166	CPSF1	100	96.533	ENSCJAG00000021421	CPSF1	100	96.533	Callithrix_jacchus
ENSCLAG00000012166	CPSF1	97	96.638	ENSCAFG00000001600	CPSF1	100	96.929	Canis_familiaris
ENSCLAG00000012166	CPSF1	100	96.814	ENSCAFG00020020821	CPSF1	100	96.814	Canis_lupus_dingo
ENSCLAG00000012166	CPSF1	100	91.117	ENSCHIG00000015833	CPSF1	100	91.117	Capra_hircus
ENSCLAG00000012166	CPSF1	100	97.573	ENSTSYG00000028560	CPSF1	100	97.573	Carlito_syrichta
ENSCLAG00000012166	CPSF1	97	98.063	ENSCAPG00000014921	CPSF1	99	98.063	Cavia_aperea
ENSCLAG00000012166	CPSF1	100	97.642	ENSCPOG00000011448	CPSF1	100	97.642	Cavia_porcellus
ENSCLAG00000012166	CPSF1	100	96.741	ENSCCAG00000037658	CPSF1	100	96.741	Cebus_capucinus
ENSCLAG00000012166	CPSF1	100	96.533	ENSCATG00000037234	CPSF1	99	97.910	Cercocebus_atys
ENSCLAG00000012166	CPSF1	100	96.671	ENSCSAG00000008502	CPSF1	100	96.671	Chlorocebus_sabaeus
ENSCLAG00000012166	CPSF1	99	87.745	ENSCPBG00000018910	CPSF1	96	87.745	Chrysemys_picta_bellii
ENSCLAG00000012166	CPSF1	96	48.816	ENSCING00000000514	-	100	48.744	Ciona_intestinalis
ENSCLAG00000012166	CPSF1	99	48.454	ENSCSAVG00000002293	-	98	49.765	Ciona_savignyi
ENSCLAG00000012166	CPSF1	99	90.973	ENSCANG00000032760	CPSF1	99	90.973	Colobus_angolensis_palliatus
ENSCLAG00000012166	CPSF1	100	97.363	ENSCGRG00001016344	Cpsf1	100	97.363	Cricetulus_griseus_chok1gshd
ENSCLAG00000012166	CPSF1	100	95.212	ENSCGRG00000003118	Cpsf1	100	95.212	Cricetulus_griseus_crigri
ENSCLAG00000012166	CPSF1	100	77.770	ENSCSEG00000013464	cpsf1	100	77.978	Cynoglossus_semilaevis
ENSCLAG00000012166	CPSF1	85	77.133	ENSCVAG00000014059	cpsf1	100	75.463	Cyprinodon_variegatus
ENSCLAG00000012166	CPSF1	100	79.835	ENSDARG00000034178	cpsf1	100	79.904	Danio_rerio
ENSCLAG00000012166	CPSF1	68	96.232	ENSDNOG00000043654	CPSF1	94	96.232	Dasypus_novemcinctus
ENSCLAG00000012166	CPSF1	97	96.987	ENSDORG00000006278	Cpsf1	99	96.987	Dipodomys_ordii
ENSCLAG00000012166	CPSF1	100	45.205	FBgn0024698	Cpsf160	100	45.077	Drosophila_melanogaster
ENSCLAG00000012166	CPSF1	80	97.987	ENSETEG00000006022	CPSF1	83	97.987	Echinops_telfairi
ENSCLAG00000012166	CPSF1	100	97.230	ENSEASG00005010774	CPSF1	100	97.230	Equus_asinus_asinus
ENSCLAG00000012166	CPSF1	100	97.299	ENSECAG00000022209	CPSF1	100	97.299	Equus_caballus
ENSCLAG00000012166	CPSF1	100	94.879	ENSEEUG00000000471	CPSF1	100	94.879	Erinaceus_europaeus
ENSCLAG00000012166	CPSF1	100	78.204	ENSELUG00000012271	cpsf1	100	78.684	Esox_lucius
ENSCLAG00000012166	CPSF1	100	99.306	ENSFDAG00000016060	CPSF1	100	99.306	Fukomys_damarensis
ENSCLAG00000012166	CPSF1	100	76.997	ENSFHEG00000016801	cpsf1	100	77.066	Fundulus_heteroclitus
ENSCLAG00000012166	CPSF1	100	78.153	ENSGMOG00000000796	cpsf1	100	78.360	Gadus_morhua
ENSCLAG00000012166	CPSF1	95	83.929	ENSGAFG00000018890	cpsf1	100	83.929	Gambusia_affinis
ENSCLAG00000012166	CPSF1	100	78.813	ENSGACG00000008703	cpsf1	100	78.802	Gasterosteus_aculeatus
ENSCLAG00000012166	CPSF1	100	83.945	ENSGAGG00000004276	CPSF1	98	87.573	Gopherus_agassizii
ENSCLAG00000012166	CPSF1	100	96.530	ENSGGOG00000016185	CPSF1	100	96.530	Gorilla_gorilla
ENSCLAG00000012166	CPSF1	100	79.986	ENSHBUG00000018900	cpsf1	100	80.125	Haplochromis_burtoni
ENSCLAG00000012166	CPSF1	100	99.375	ENSHGLG00000016139	CPSF1	100	99.375	Heterocephalus_glaber_female
ENSCLAG00000012166	CPSF1	100	99.306	ENSHGLG00100009750	CPSF1	100	99.306	Heterocephalus_glaber_male
ENSCLAG00000012166	CPSF1	100	77.205	ENSHCOG00000018509	cpsf1	100	77.325	Hippocampus_comes
ENSCLAG00000012166	CPSF1	100	76.305	ENSIPUG00000011259	cpsf1	100	76.305	Ictalurus_punctatus
ENSCLAG00000012166	CPSF1	97	97.141	ENSSTOG00000009957	CPSF1	99	97.141	Ictidomys_tridecemlineatus
ENSCLAG00000012166	CPSF1	100	97.294	ENSJJAG00000023002	Cpsf1	100	97.294	Jaculus_jaculus
ENSCLAG00000012166	CPSF1	91	85.580	ENSKMAG00000001940	cpsf1	99	85.580	Kryptolebias_marmoratus
ENSCLAG00000012166	CPSF1	100	77.301	ENSLBEG00000003601	cpsf1	100	77.642	Labrus_bergylta
ENSCLAG00000012166	CPSF1	88	81.731	ENSLACG00000000233	CPSF1	92	81.731	Latimeria_chalumnae
ENSCLAG00000012166	CPSF1	100	78.039	ENSLOCG00000008484	cpsf1	100	78.384	Lepisosteus_oculatus
ENSCLAG00000012166	CPSF1	97	95.419	ENSLAFG00000022601	CPSF1	100	95.419	Loxodonta_africana
ENSCLAG00000012166	CPSF1	100	96.533	ENSMFAG00000037013	CPSF1	99	97.612	Macaca_fascicularis
ENSCLAG00000012166	CPSF1	100	96.602	ENSMMUG00000007380	CPSF1	100	96.602	Macaca_mulatta
ENSCLAG00000012166	CPSF1	97	96.557	ENSMNEG00000043564	CPSF1	100	96.557	Macaca_nemestrina
ENSCLAG00000012166	CPSF1	100	96.533	ENSMLEG00000043010	CPSF1	99	97.612	Mandrillus_leucophaeus
ENSCLAG00000012166	CPSF1	100	78.567	ENSMAMG00000003803	cpsf1	100	78.702	Mastacembelus_armatus
ENSCLAG00000012166	CPSF1	100	77.909	ENSMZEG00005001168	cpsf1	100	78.047	Maylandia_zebra
ENSCLAG00000012166	CPSF1	100	97.363	ENSMAUG00000003601	Cpsf1	100	97.363	Mesocricetus_auratus
ENSCLAG00000012166	CPSF1	100	97.224	ENSMICG00000015767	CPSF1	100	97.224	Microcebus_murinus
ENSCLAG00000012166	CPSF1	100	97.432	ENSMOCG00000022758	Cpsf1	100	97.432	Microtus_ochrogaster
ENSCLAG00000012166	CPSF1	100	79.100	ENSMMOG00000021245	cpsf1	100	79.308	Mola_mola
ENSCLAG00000012166	CPSF1	100	93.237	ENSMODG00000010755	CPSF1	100	93.237	Monodelphis_domestica
ENSCLAG00000012166	CPSF1	100	77.996	ENSMALG00000020545	cpsf1	100	78.131	Monopterus_albus
ENSCLAG00000012166	CPSF1	100	97.918	MGP_CAROLIEiJ_G0019936	Cpsf1	100	97.918	Mus_caroli
ENSCLAG00000012166	CPSF1	100	97.779	ENSMUSG00000034022	Cpsf1	100	97.779	Mus_musculus
ENSCLAG00000012166	CPSF1	100	97.849	MGP_PahariEiJ_G0019946	Cpsf1	100	97.849	Mus_pahari
ENSCLAG00000012166	CPSF1	100	97.849	MGP_SPRETEiJ_G0020839	Cpsf1	100	97.849	Mus_spretus
ENSCLAG00000012166	CPSF1	94	96.071	ENSMPUG00000006419	CPSF1	93	96.071	Mustela_putorius_furo
ENSCLAG00000012166	CPSF1	100	97.085	ENSNGAG00000022460	Cpsf1	100	97.085	Nannospalax_galili
ENSCLAG00000012166	CPSF1	100	74.948	ENSNBRG00000000813	cpsf1	100	74.948	Neolamprologus_brichardi
ENSCLAG00000012166	CPSF1	86	85.222	ENSNLEG00000010633	-	100	88.889	Nomascus_leucogenys
ENSCLAG00000012166	CPSF1	82	98.256	ENSMEUG00000014922	CPSF1	85	98.256	Notamacropus_eugenii
ENSCLAG00000012166	CPSF1	61	96.429	ENSOPRG00000004693	-	71	96.429	Ochotona_princeps
ENSCLAG00000012166	CPSF1	100	99.722	ENSODEG00000013995	CPSF1	100	99.722	Octodon_degus
ENSCLAG00000012166	CPSF1	100	80.332	ENSONIG00000007676	cpsf1	100	80.471	Oreochromis_niloticus
ENSCLAG00000012166	CPSF1	58	92.143	ENSOANG00000010716	CPSF1	88	92.143	Ornithorhynchus_anatinus
ENSCLAG00000012166	CPSF1	100	77.415	ENSORLG00000013544	cpsf1	92	86.831	Oryzias_latipes
ENSCLAG00000012166	CPSF1	100	77.483	ENSORLG00020021693	cpsf1	92	86.831	Oryzias_latipes_hni
ENSCLAG00000012166	CPSF1	100	77.483	ENSORLG00015009979	cpsf1	100	77.551	Oryzias_latipes_hsok
ENSCLAG00000012166	CPSF1	100	77.452	ENSOMEG00000011849	cpsf1	100	77.725	Oryzias_melastigma
ENSCLAG00000012166	CPSF1	100	97.295	ENSOGAG00000000315	CPSF1	100	97.295	Otolemur_garnettii
ENSCLAG00000012166	CPSF1	100	96.602	ENSPPAG00000019280	CPSF1	100	96.602	Pan_paniscus
ENSCLAG00000012166	CPSF1	100	94.956	ENSPTRG00000051253	-	100	94.956	Pan_troglodytes
ENSCLAG00000012166	CPSF1	100	96.602	ENSPTRG00000049288	-	100	96.602	Pan_troglodytes
ENSCLAG00000012166	CPSF1	97	96.413	ENSPANG00000015005	CPSF1	100	96.413	Papio_anubis
ENSCLAG00000012166	CPSF1	100	80.761	ENSPKIG00000002582	cpsf1	100	81.184	Paramormyrops_kingsleyae
ENSCLAG00000012166	CPSF1	100	93.168	ENSPCIG00000009035	CPSF1	100	93.168	Phascolarctos_cinereus
ENSCLAG00000012166	CPSF1	100	76.574	ENSPFOG00000012870	cpsf1	100	76.642	Poecilia_formosa
ENSCLAG00000012166	CPSF1	100	76.522	ENSPREG00000016307	cpsf1	100	76.522	Poecilia_reticulata
ENSCLAG00000012166	CPSF1	100	88.488	ENSPPYG00000018973	CPSF1	100	88.488	Pongo_abelii
ENSCLAG00000012166	CPSF1	91	95.170	ENSPCAG00000011541	CPSF1	94	95.170	Procavia_capensis
ENSCLAG00000012166	CPSF1	100	93.551	ENSPCOG00000020001	CPSF1	100	93.551	Propithecus_coquereli
ENSCLAG00000012166	CPSF1	91	99.143	ENSPVAG00000006761	CPSF1	91	99.143	Pteropus_vampyrus
ENSCLAG00000012166	CPSF1	100	78.947	ENSPNYG00000004906	cpsf1	100	79.084	Pundamilia_nyererei
ENSCLAG00000012166	CPSF1	100	75.121	ENSPNAG00000024395	cpsf1	100	75.121	Pygocentrus_nattereri
ENSCLAG00000012166	CPSF1	100	97.779	ENSRNOG00000030705	Cpsf1	100	97.779	Rattus_norvegicus
ENSCLAG00000012166	CPSF1	100	96.602	ENSRBIG00000044907	CPSF1	100	96.602	Rhinopithecus_bieti
ENSCLAG00000012166	CPSF1	100	96.533	ENSRROG00000044861	CPSF1	100	96.533	Rhinopithecus_roxellana
ENSCLAG00000012166	CPSF1	97	96.485	ENSSBOG00000027177	CPSF1	100	96.485	Saimiri_boliviensis_boliviensis
ENSCLAG00000012166	CPSF1	100	93.099	ENSSHAG00000006500	CPSF1	100	93.099	Sarcophilus_harrisii
ENSCLAG00000012166	CPSF1	100	78.015	ENSSFOG00015004606	cpsf1	100	81.295	Scleropages_formosus
ENSCLAG00000012166	CPSF1	100	78.199	ENSSMAG00000020547	cpsf1	100	78.334	Scophthalmus_maximus
ENSCLAG00000012166	CPSF1	100	79.461	ENSSDUG00000001100	cpsf1	100	79.806	Seriola_dumerili
ENSCLAG00000012166	CPSF1	100	79.585	ENSSLDG00000003619	cpsf1	100	79.723	Seriola_lalandi_dorsalis
ENSCLAG00000012166	CPSF1	89	100.000	ENSSARG00000003643	CPSF1	92	100.000	Sorex_araneus
ENSCLAG00000012166	CPSF1	96	87.527	ENSSPUG00000014396	CPSF1	100	87.527	Sphenodon_punctatus
ENSCLAG00000012166	CPSF1	100	78.214	ENSSPAG00000005349	cpsf1	100	78.349	Stegastes_partitus
ENSCLAG00000012166	CPSF1	100	95.776	ENSSSCG00000005906	CPSF1	100	95.776	Sus_scrofa
ENSCLAG00000012166	CPSF1	96	78.011	ENSTRUG00000013134	cpsf1	99	78.151	Takifugu_rubripes
ENSCLAG00000012166	CPSF1	100	78.694	ENSTNIG00000014027	cpsf1	100	78.763	Tetraodon_nigroviridis
ENSCLAG00000012166	CPSF1	77	89.828	ENSTBEG00000001756	CPSF1	91	89.828	Tupaia_belangeri
ENSCLAG00000012166	CPSF1	90	97.237	ENSTTRG00000001937	CPSF1	90	97.237	Tursiops_truncatus
ENSCLAG00000012166	CPSF1	97	96.638	ENSUAMG00000006476	CPSF1	98	96.638	Ursus_americanus
ENSCLAG00000012166	CPSF1	100	77.716	ENSXCOG00000003608	cpsf1	100	77.993	Xiphophorus_couchianus
ENSCLAG00000012166	CPSF1	100	77.194	ENSXMAG00000005798	cpsf1	100	77.402	Xiphophorus_maculatus