EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCLAG00000013448 (Gene tree)
Gene ID: 102025798
Gene Symbol: PRPF4
Alias: HPRP4|HPRP4P|PRP4|Prp4p|SNRNP60
Full Name: pre-mRNA processing factor 4
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Minus strand
Length: 15935 bases
Position: chrJH721879.1:14190152-14206086
Accession: 102025798
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000019596	PRP4	PF08799.11	4.3e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000019789	PRPF4-201	2552	XM_005382685	ENSCLAP00000019596	521 (aa)	XP_005382742	UPI00038F05C2

Gene Model

Click here to download ENSCLAG00000013448's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000013448's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCLAG00000013448	PRPF4	56	30.000	ENSCLAG00000010593	POC1A	83	30.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000013448	PRPF4	100	99.040	ENSG00000136875	PRPF4	100	99.040	Homo_sapiens
ENSCLAG00000013448	PRPF4	96	77.406	ENSAPOG00000014132	prpf4	98	77.406	Acanthochromis_polyacanthus
ENSCLAG00000013448	PRPF4	100	99.232	ENSAMEG00000013048	PRPF4	98	99.232	Ailuropoda_melanoleuca
ENSCLAG00000013448	PRPF4	96	77.183	ENSACIG00000005579	prpf4	99	77.183	Amphilophus_citrinellus
ENSCLAG00000013448	PRPF4	96	76.832	ENSAOCG00000005457	prpf4	99	76.832	Amphiprion_ocellaris
ENSCLAG00000013448	PRPF4	96	76.634	ENSAPEG00000000776	prpf4	99	76.634	Amphiprion_percula
ENSCLAG00000013448	PRPF4	96	76.587	ENSATEG00000023013	prpf4	99	76.587	Anabas_testudineus
ENSCLAG00000013448	PRPF4	100	89.060	ENSAPLG00000006534	PRPF4	97	89.060	Anas_platyrhynchos
ENSCLAG00000013448	PRPF4	100	89.866	ENSACAG00000015110	PRPF4	100	89.866	Anolis_carolinensis
ENSCLAG00000013448	PRPF4	100	99.424	ENSANAG00000022464	PRPF4	96	99.424	Aotus_nancymaae
ENSCLAG00000013448	PRPF4	96	76.984	ENSACLG00000019031	prpf4	99	76.984	Astatotilapia_calliptera
ENSCLAG00000013448	PRPF4	97	62.188	ENSAMXG00000006756	prpf4	99	73.465	Astyanax_mexicanus
ENSCLAG00000013448	PRPF4	100	98.464	ENSBTAG00000004571	PRPF4	100	98.464	Bos_taurus
ENSCLAG00000013448	PRPF4	90	43.882	WBGene00007972	prp-4	96	43.789	Caenorhabditis_elegans
ENSCLAG00000013448	PRPF4	100	99.234	ENSCJAG00000017856	PRPF4	100	99.234	Callithrix_jacchus
ENSCLAG00000013448	PRPF4	100	99.232	ENSCAFG00000003224	PRPF4	97	99.232	Canis_familiaris
ENSCLAG00000013448	PRPF4	100	99.232	ENSCAFG00020022637	PRPF4	100	99.232	Canis_lupus_dingo
ENSCLAG00000013448	PRPF4	100	99.042	ENSCHIG00000024648	-	100	99.042	Capra_hircus
ENSCLAG00000013448	PRPF4	100	99.232	ENSTSYG00000010366	PRPF4	100	99.232	Carlito_syrichta
ENSCLAG00000013448	PRPF4	88	88.783	ENSCAPG00000008935	PRPF4	97	88.783	Cavia_aperea
ENSCLAG00000013448	PRPF4	100	92.898	ENSCPOG00000014729	-	100	92.898	Cavia_porcellus
ENSCLAG00000013448	PRPF4	100	99.424	ENSCPOG00000010747	-	100	99.424	Cavia_porcellus
ENSCLAG00000013448	PRPF4	100	99.232	ENSCCAG00000028990	PRPF4	100	99.232	Cebus_capucinus
ENSCLAG00000013448	PRPF4	100	99.040	ENSCATG00000021552	PRPF4	100	99.040	Cercocebus_atys
ENSCLAG00000013448	PRPF4	87	95.575	ENSCHOG00000007233	PRPF4	100	95.575	Choloepus_hoffmanni
ENSCLAG00000013448	PRPF4	99	90.874	ENSCPBG00000019136	PRPF4	74	90.874	Chrysemys_picta_bellii
ENSCLAG00000013448	PRPF4	96	59.252	ENSCING00000001299	-	97	58.614	Ciona_intestinalis
ENSCLAG00000013448	PRPF4	96	57.937	ENSCSAVG00000009178	-	99	59.307	Ciona_savignyi
ENSCLAG00000013448	PRPF4	100	99.232	ENSCANG00000003246	PRPF4	100	99.232	Colobus_angolensis_palliatus
ENSCLAG00000013448	PRPF4	100	99.040	ENSCGRG00001016992	Prpf4	100	99.040	Cricetulus_griseus_chok1gshd
ENSCLAG00000013448	PRPF4	100	99.040	ENSCGRG00000017560	Prpf4	100	99.040	Cricetulus_griseus_crigri
ENSCLAG00000013448	PRPF4	97	75.644	ENSCSEG00000020451	prpf4	99	75.644	Cynoglossus_semilaevis
ENSCLAG00000013448	PRPF4	97	79.802	ENSDARG00000067639	prpf4	99	79.802	Danio_rerio
ENSCLAG00000013448	PRPF4	100	98.659	ENSDNOG00000013203	PRPF4	100	98.659	Dasypus_novemcinctus
ENSCLAG00000013448	PRPF4	100	99.040	ENSDORG00000026275	Prpf4	100	99.040	Dipodomys_ordii
ENSCLAG00000013448	PRPF4	87	56.674	FBgn0036733	U4-U6-60K	99	50.547	Drosophila_melanogaster
ENSCLAG00000013448	PRPF4	100	97.132	ENSETEG00000020389	PRPF4	100	97.132	Echinops_telfairi
ENSCLAG00000013448	PRPF4	95	72.811	ENSEBUG00000015229	prpf4	86	73.272	Eptatretus_burgeri
ENSCLAG00000013448	PRPF4	100	99.424	ENSEASG00005022678	PRPF4	100	99.424	Equus_asinus_asinus
ENSCLAG00000013448	PRPF4	100	99.424	ENSECAG00000007072	PRPF4	100	99.424	Equus_caballus
ENSCLAG00000013448	PRPF4	100	78.384	ENSEEUG00000007480	PRPF4	100	78.384	Erinaceus_europaeus
ENSCLAG00000013448	PRPF4	97	80.990	ENSELUG00000007510	prpf4	99	80.990	Esox_lucius
ENSCLAG00000013448	PRPF4	100	99.234	ENSFCAG00000005514	PRPF4	100	99.234	Felis_catus
ENSCLAG00000013448	PRPF4	98	88.117	ENSFALG00000005423	PRPF4	90	85.376	Ficedula_albicollis
ENSCLAG00000013448	PRPF4	100	99.424	ENSFDAG00000005839	PRPF4	100	99.424	Fukomys_damarensis
ENSCLAG00000013448	PRPF4	96	76.389	ENSFHEG00000001300	prpf4	99	76.389	Fundulus_heteroclitus
ENSCLAG00000013448	PRPF4	98	90.020	ENSGALG00000008857	PRPF4	96	89.341	Gallus_gallus
ENSCLAG00000013448	PRPF4	65	71.176	ENSGAFG00000012164	prpf4	70	71.176	Gambusia_affinis
ENSCLAG00000013448	PRPF4	96	69.643	ENSGACG00000015476	prpf4	99	68.849	Gasterosteus_aculeatus
ENSCLAG00000013448	PRPF4	99	90.680	ENSGAGG00000025029	PRPF4	95	90.680	Gopherus_agassizii
ENSCLAG00000013448	PRPF4	100	99.040	ENSGGOG00000006943	PRPF4	100	99.040	Gorilla_gorilla
ENSCLAG00000013448	PRPF4	96	76.786	ENSHBUG00000000562	prpf4	99	76.786	Haplochromis_burtoni
ENSCLAG00000013448	PRPF4	100	99.424	ENSHGLG00000015191	PRPF4	100	99.424	Heterocephalus_glaber_female
ENSCLAG00000013448	PRPF4	100	80.806	ENSHGLG00000003838	-	100	80.806	Heterocephalus_glaber_female
ENSCLAG00000013448	PRPF4	100	82.027	ENSHGLG00000016628	-	100	82.792	Heterocephalus_glaber_female
ENSCLAG00000013448	PRPF4	100	80.806	ENSHGLG00100005571	-	100	80.806	Heterocephalus_glaber_male
ENSCLAG00000013448	PRPF4	97	78.812	ENSIPUG00000017956	PRPF4	99	78.812	Ictalurus_punctatus
ENSCLAG00000013448	PRPF4	100	98.848	ENSSTOG00000027833	PRPF4	100	98.848	Ictidomys_tridecemlineatus
ENSCLAG00000013448	PRPF4	100	99.424	ENSJJAG00000008838	Prpf4	100	99.424	Jaculus_jaculus
ENSCLAG00000013448	PRPF4	96	76.389	ENSKMAG00000013236	prpf4	99	76.389	Kryptolebias_marmoratus
ENSCLAG00000013448	PRPF4	96	75.896	ENSLBEG00000020611	prpf4	99	75.896	Labrus_bergylta
ENSCLAG00000013448	PRPF4	99	80.539	ENSLACG00000016317	PRPF4	99	80.539	Latimeria_chalumnae
ENSCLAG00000013448	PRPF4	97	81.386	ENSLOCG00000000581	prpf4	99	81.386	Lepisosteus_oculatus
ENSCLAG00000013448	PRPF4	100	98.467	ENSLAFG00000018225	PRPF4	100	98.467	Loxodonta_africana
ENSCLAG00000013448	PRPF4	100	98.848	ENSMFAG00000039397	PRPF4	100	98.848	Macaca_fascicularis
ENSCLAG00000013448	PRPF4	100	99.040	ENSMMUG00000005844	PRPF4	100	99.040	Macaca_mulatta
ENSCLAG00000013448	PRPF4	100	88.484	ENSMNEG00000033737	PRPF4	100	88.484	Macaca_nemestrina
ENSCLAG00000013448	PRPF4	100	99.040	ENSMLEG00000040284	PRPF4	100	99.040	Mandrillus_leucophaeus
ENSCLAG00000013448	PRPF4	97	76.134	ENSMAMG00000020141	prpf4	99	76.134	Mastacembelus_armatus
ENSCLAG00000013448	PRPF4	96	76.984	ENSMZEG00005023205	prpf4	99	76.984	Maylandia_zebra
ENSCLAG00000013448	PRPF4	99	88.269	ENSMGAG00000001796	PRPF4	97	88.269	Meleagris_gallopavo
ENSCLAG00000013448	PRPF4	100	98.464	ENSMAUG00000018022	Prpf4	100	98.464	Mesocricetus_auratus
ENSCLAG00000013448	PRPF4	100	98.656	ENSMICG00000015022	PRPF4	100	98.467	Microcebus_murinus
ENSCLAG00000013448	PRPF4	100	98.464	ENSMOCG00000018273	Prpf4	100	98.464	Microtus_ochrogaster
ENSCLAG00000013448	PRPF4	97	74.653	ENSMMOG00000021177	prpf4	99	74.653	Mola_mola
ENSCLAG00000013448	PRPF4	100	94.646	ENSMODG00000025096	-	97	94.646	Monodelphis_domestica
ENSCLAG00000013448	PRPF4	100	94.837	ENSMODG00000004444	-	100	94.837	Monodelphis_domestica
ENSCLAG00000013448	PRPF4	96	76.587	ENSMALG00000013624	prpf4	99	76.587	Monopterus_albus
ENSCLAG00000013448	PRPF4	100	98.848	MGP_CAROLIEiJ_G0026078	Prpf4	100	98.848	Mus_caroli
ENSCLAG00000013448	PRPF4	100	98.848	ENSMUSG00000066148	Prpf4	100	98.848	Mus_musculus
ENSCLAG00000013448	PRPF4	100	98.656	MGP_PahariEiJ_G0028413	Prpf4	100	98.656	Mus_pahari
ENSCLAG00000013448	PRPF4	100	98.848	MGP_SPRETEiJ_G0027042	Prpf4	100	98.848	Mus_spretus
ENSCLAG00000013448	PRPF4	100	99.232	ENSMPUG00000007883	PRPF4	100	99.232	Mustela_putorius_furo
ENSCLAG00000013448	PRPF4	100	97.313	ENSMLUG00000008626	-	97	97.313	Myotis_lucifugus
ENSCLAG00000013448	PRPF4	100	99.232	ENSMLUG00000015309	-	97	99.232	Myotis_lucifugus
ENSCLAG00000013448	PRPF4	100	93.666	ENSNGAG00000000468	Prpf4	100	93.666	Nannospalax_galili
ENSCLAG00000013448	PRPF4	96	77.183	ENSNBRG00000007972	prpf4	99	77.183	Neolamprologus_brichardi
ENSCLAG00000013448	PRPF4	100	99.424	ENSNLEG00000016647	PRPF4	100	99.424	Nomascus_leucogenys
ENSCLAG00000013448	PRPF4	99	94.553	ENSMEUG00000013256	PRPF4	100	94.553	Notamacropus_eugenii
ENSCLAG00000013448	PRPF4	100	98.467	ENSOPRG00000005302	PRPF4	100	98.467	Ochotona_princeps
ENSCLAG00000013448	PRPF4	100	99.808	ENSODEG00000018147	PRPF4	100	99.808	Octodon_degus
ENSCLAG00000013448	PRPF4	99	75.287	ENSONIG00000012671	prpf4	99	76.984	Oreochromis_niloticus
ENSCLAG00000013448	PRPF4	100	99.232	ENSOCUG00000005046	PRPF4	100	99.232	Oryctolagus_cuniculus
ENSCLAG00000013448	PRPF4	96	75.100	ENSORLG00000019641	prpf4	99	75.100	Oryzias_latipes
ENSCLAG00000013448	PRPF4	96	75.100	ENSORLG00020019438	prpf4	99	75.100	Oryzias_latipes_hni
ENSCLAG00000013448	PRPF4	96	74.947	ENSOMEG00000020941	prpf4	99	74.947	Oryzias_melastigma
ENSCLAG00000013448	PRPF4	100	94.434	ENSOGAG00000007802	PRPF4	98	94.434	Otolemur_garnettii
ENSCLAG00000013448	PRPF4	100	99.232	ENSOARG00000006319	PRPF4	97	99.232	Ovis_aries
ENSCLAG00000013448	PRPF4	100	99.040	ENSPPAG00000041797	PRPF4	100	99.040	Pan_paniscus
ENSCLAG00000013448	PRPF4	100	99.424	ENSPPRG00000014360	PRPF4	100	99.424	Panthera_pardus
ENSCLAG00000013448	PRPF4	100	99.424	ENSPTIG00000009574	PRPF4	100	99.424	Panthera_tigris_altaica
ENSCLAG00000013448	PRPF4	100	99.040	ENSPTRG00000021274	PRPF4	100	98.851	Pan_troglodytes
ENSCLAG00000013448	PRPF4	100	99.040	ENSPANG00000025776	PRPF4	96	99.040	Papio_anubis
ENSCLAG00000013448	PRPF4	97	81.188	ENSPKIG00000017259	prpf4	99	81.188	Paramormyrops_kingsleyae
ENSCLAG00000013448	PRPF4	100	89.251	ENSPSIG00000010713	PRPF4	91	89.768	Pelodiscus_sinensis
ENSCLAG00000013448	PRPF4	99	58.425	ENSPMGG00000000997	prpf4	99	58.532	Periophthalmus_magnuspinnatus
ENSCLAG00000013448	PRPF4	100	99.040	ENSPEMG00000024115	Prpf4	100	99.040	Peromyscus_maniculatus_bairdii
ENSCLAG00000013448	PRPF4	99	94.553	ENSPCIG00000003821	PRPF4	99	94.553	Phascolarctos_cinereus
ENSCLAG00000013448	PRPF4	96	70.020	ENSPFOG00000013524	prpf4	98	72.981	Poecilia_formosa
ENSCLAG00000013448	PRPF4	82	69.659	ENSPLAG00000011620	prpf4	96	72.050	Poecilia_latipinna
ENSCLAG00000013448	PRPF4	92	74.096	ENSPMEG00000006813	prpf4	98	74.096	Poecilia_mexicana
ENSCLAG00000013448	PRPF4	98	98.830	ENSPCAG00000002561	PRPF4	99	98.830	Procavia_capensis
ENSCLAG00000013448	PRPF4	100	99.232	ENSPCOG00000011975	PRPF4	100	99.232	Propithecus_coquereli
ENSCLAG00000013448	PRPF4	100	95.211	ENSPVAG00000004708	PRPF4	100	95.211	Pteropus_vampyrus
ENSCLAG00000013448	PRPF4	96	76.984	ENSPNYG00000008013	prpf4	99	76.984	Pundamilia_nyererei
ENSCLAG00000013448	PRPF4	97	80.000	ENSPNAG00000000697	prpf4	99	80.000	Pygocentrus_nattereri
ENSCLAG00000013448	PRPF4	100	99.040	ENSRNOG00000014777	Prpf4	100	99.040	Rattus_norvegicus
ENSCLAG00000013448	PRPF4	100	99.232	ENSRBIG00000040221	PRPF4	100	99.232	Rhinopithecus_bieti
ENSCLAG00000013448	PRPF4	100	99.232	ENSRROG00000040240	PRPF4	100	99.232	Rhinopithecus_roxellana
ENSCLAG00000013448	PRPF4	100	95.029	ENSSHAG00000017658	PRPF4	100	95.029	Sarcophilus_harrisii
ENSCLAG00000013448	PRPF4	97	81.980	ENSSFOG00015008963	prpf4	99	81.980	Scleropages_formosus
ENSCLAG00000013448	PRPF4	96	75.595	ENSSMAG00000008889	prpf4	99	75.595	Scophthalmus_maximus
ENSCLAG00000013448	PRPF4	96	73.506	ENSSDUG00000022083	prpf4	98	73.705	Seriola_dumerili
ENSCLAG00000013448	PRPF4	96	73.705	ENSSLDG00000008115	prpf4	98	73.904	Seriola_lalandi_dorsalis
ENSCLAG00000013448	PRPF4	100	90.403	ENSSPUG00000015582	PRPF4	100	90.403	Sphenodon_punctatus
ENSCLAG00000013448	PRPF4	96	71.203	ENSSPAG00000011286	prpf4	99	71.203	Stegastes_partitus
ENSCLAG00000013448	PRPF4	100	99.424	ENSSSCG00000024648	PRPF4	100	99.424	Sus_scrofa
ENSCLAG00000013448	PRPF4	95	90.264	ENSTGUG00000002623	PRPF4	100	90.593	Taeniopygia_guttata
ENSCLAG00000013448	PRPF4	97	75.296	ENSTRUG00000008853	prpf4	99	75.296	Takifugu_rubripes
ENSCLAG00000013448	PRPF4	97	74.653	ENSTNIG00000013250	prpf4	99	74.653	Tetraodon_nigroviridis
ENSCLAG00000013448	PRPF4	100	90.805	ENSTBEG00000000821	PRPF4	100	90.805	Tupaia_belangeri
ENSCLAG00000013448	PRPF4	82	99.329	ENSTTRG00000003246	PRPF4	85	99.329	Tursiops_truncatus
ENSCLAG00000013448	PRPF4	64	96.707	ENSUAMG00000018288	PRPF4	90	96.707	Ursus_americanus
ENSCLAG00000013448	PRPF4	100	98.464	ENSUMAG00000019375	PRPF4	100	98.464	Ursus_maritimus
ENSCLAG00000013448	PRPF4	100	99.042	ENSVPAG00000005281	PRPF4	100	99.042	Vicugna_pacos
ENSCLAG00000013448	PRPF4	100	98.095	ENSVVUG00000002476	PRPF4	100	98.095	Vulpes_vulpes
ENSCLAG00000013448	PRPF4	69	58.611	ENSXCOG00000006101	prpf4	93	59.360	Xiphophorus_couchianus
ENSCLAG00000013448	PRPF4	88	64.847	ENSXMAG00000002750	prpf4	98	65.408	Xiphophorus_maculatus