EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCLAG00000014645 (Gene tree)
Gene ID: 102017972
Gene Symbol: APOBEC1
Alias: APOBEC-1|BEDP|CDAR1|HEPR
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Minus strand
Length: 8517 bases
Position: chrJH721873.1:6471953-6480469
Accession: 102017972
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000021384	APOBEC_N	PF08210.11	1.4e-29	1	1
ENSCLAP00000021384	APOBEC_C	PF05240.14	3.2e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000021587	APOBEC1-201	690	XM_005379611	ENSCLAP00000021384	230 (aa)	XP_005379668	-

Gene Model

Click here to download ENSCLAG00000014645's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000014645's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCLAG00000014645	APOBEC1	51	36.752	ENSCLAG00000016615	-	54	36.752

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000014645	APOBEC1	100	70.870	ENSG00000111701	APOBEC1	97	70.870	Homo_sapiens
ENSCLAG00000014645	APOBEC1	97	70.089	ENSAMEG00000007098	APOBEC1	95	70.089	Ailuropoda_melanoleuca
ENSCLAG00000014645	APOBEC1	74	41.954	ENSACAG00000028578	-	93	41.954	Anolis_carolinensis
ENSCLAG00000014645	APOBEC1	99	68.122	ENSANAG00000027743	APOBEC1	92	68.122	Aotus_nancymaae
ENSCLAG00000014645	APOBEC1	100	66.087	ENSBTAG00000014683	APOBEC1	97	66.087	Bos_taurus
ENSCLAG00000014645	APOBEC1	93	69.159	ENSCJAG00000005398	APOBEC1	97	69.159	Callithrix_jacchus
ENSCLAG00000014645	APOBEC1	99	69.432	ENSCAFG00000013901	APOBEC1	97	69.432	Canis_familiaris
ENSCLAG00000014645	APOBEC1	99	66.079	ENSCAFG00020003511	APOBEC1	95	66.079	Canis_lupus_dingo
ENSCLAG00000014645	APOBEC1	97	64.732	ENSCHIG00000011898	APOBEC1	93	64.732	Capra_hircus
ENSCLAG00000014645	APOBEC1	61	69.504	ENSTSYG00000029141	APOBEC1	100	69.504	Carlito_syrichta
ENSCLAG00000014645	APOBEC1	93	90.698	ENSCAPG00000015882	-	100	90.698	Cavia_aperea
ENSCLAG00000014645	APOBEC1	100	86.522	ENSCPOG00000033068	APOBEC1	97	86.522	Cavia_porcellus
ENSCLAG00000014645	APOBEC1	99	69.432	ENSCCAG00000022258	APOBEC1	97	69.432	Cebus_capucinus
ENSCLAG00000014645	APOBEC1	99	71.179	ENSCATG00000021613	APOBEC1	92	71.179	Cercocebus_atys
ENSCLAG00000014645	APOBEC1	80	70.109	ENSCSAG00000009817	APOBEC1	96	70.109	Chlorocebus_sabaeus
ENSCLAG00000014645	APOBEC1	80	45.989	ENSCPBG00000014335	-	76	45.989	Chrysemys_picta_bellii
ENSCLAG00000014645	APOBEC1	80	45.989	ENSCPBG00000014331	-	77	45.989	Chrysemys_picta_bellii
ENSCLAG00000014645	APOBEC1	83	45.833	ENSCPBG00000014328	-	84	45.833	Chrysemys_picta_bellii
ENSCLAG00000014645	APOBEC1	71	46.386	ENSCPBG00000017398	-	73	46.386	Chrysemys_picta_bellii
ENSCLAG00000014645	APOBEC1	85	45.408	ENSCPBG00000014329	-	54	45.408	Chrysemys_picta_bellii
ENSCLAG00000014645	APOBEC1	89	43.961	ENSCPBG00000014327	-	84	39.352	Chrysemys_picta_bellii
ENSCLAG00000014645	APOBEC1	97	70.852	ENSCANG00000038359	APOBEC1	97	70.852	Colobus_angolensis_palliatus
ENSCLAG00000014645	APOBEC1	99	60.699	ENSCGRG00001011130	Apobec1	100	60.699	Cricetulus_griseus_chok1gshd
ENSCLAG00000014645	APOBEC1	99	60.699	ENSCGRG00000008644	Apobec1	100	60.699	Cricetulus_griseus_crigri
ENSCLAG00000014645	APOBEC1	99	68.122	ENSDNOG00000010926	APOBEC1	97	68.122	Dasypus_novemcinctus
ENSCLAG00000014645	APOBEC1	93	59.813	ENSDORG00000023717	Apobec1	100	59.813	Dipodomys_ordii
ENSCLAG00000014645	APOBEC1	99	69.565	ENSETEG00000004867	APOBEC1	97	69.565	Echinops_telfairi
ENSCLAG00000014645	APOBEC1	98	71.681	ENSEASG00005015951	APOBEC1	95	71.681	Equus_asinus_asinus
ENSCLAG00000014645	APOBEC1	80	71.196	ENSECAG00000017163	APOBEC1	96	71.196	Equus_caballus
ENSCLAG00000014645	APOBEC1	89	62.439	ENSEEUG00000009112	-	91	62.439	Erinaceus_europaeus
ENSCLAG00000014645	APOBEC1	89	51.471	ENSEEUG00000007530	-	97	51.471	Erinaceus_europaeus
ENSCLAG00000014645	APOBEC1	99	71.179	ENSFCAG00000009350	APOBEC1	97	71.179	Felis_catus
ENSCLAG00000014645	APOBEC1	67	45.775	ENSFALG00000007257	-	72	45.775	Ficedula_albicollis
ENSCLAG00000014645	APOBEC1	88	72.277	ENSFDAG00000018470	APOBEC1	97	72.277	Fukomys_damarensis
ENSCLAG00000014645	APOBEC1	74	43.860	ENSGAGG00000006624	-	62	43.860	Gopherus_agassizii
ENSCLAG00000014645	APOBEC1	94	46.119	ENSGAGG00000011837	-	90	46.119	Gopherus_agassizii
ENSCLAG00000014645	APOBEC1	70	46.914	ENSGAGG00000004947	-	80	46.914	Gopherus_agassizii
ENSCLAG00000014645	APOBEC1	78	40.437	ENSGAGG00000021745	-	68	40.437	Gopherus_agassizii
ENSCLAG00000014645	APOBEC1	88	41.667	ENSGAGG00000021744	-	79	41.667	Gopherus_agassizii
ENSCLAG00000014645	APOBEC1	100	76.957	ENSHGLG00000001495	APOBEC1	97	76.957	Heterocephalus_glaber_female
ENSCLAG00000014645	APOBEC1	100	76.087	ENSHGLG00100002187	APOBEC1	97	76.087	Heterocephalus_glaber_male
ENSCLAG00000014645	APOBEC1	93	54.673	ENSSTOG00000021971	APOBEC1	100	65.306	Ictidomys_tridecemlineatus
ENSCLAG00000014645	APOBEC1	99	68.996	ENSJJAG00000022108	Apobec1	100	68.996	Jaculus_jaculus
ENSCLAG00000014645	APOBEC1	94	69.444	ENSLAFG00000030837	APOBEC1	97	69.444	Loxodonta_africana
ENSCLAG00000014645	APOBEC1	99	71.179	ENSMFAG00000000277	APOBEC1	97	71.179	Macaca_fascicularis
ENSCLAG00000014645	APOBEC1	99	71.616	ENSMNEG00000029670	APOBEC1	97	71.616	Macaca_nemestrina
ENSCLAG00000014645	APOBEC1	99	71.179	ENSMLEG00000036301	APOBEC1	97	71.179	Mandrillus_leucophaeus
ENSCLAG00000014645	APOBEC1	94	61.574	ENSMAUG00000022167	Apobec1	97	61.574	Mesocricetus_auratus
ENSCLAG00000014645	APOBEC1	100	72.609	ENSMICG00000043645	APOBEC1	97	72.609	Microcebus_murinus
ENSCLAG00000014645	APOBEC1	99	60.699	ENSMODG00000018004	APOBEC1	97	60.699	Monodelphis_domestica
ENSCLAG00000014645	APOBEC1	99	62.719	ENSMUSG00000040613	Apobec1	99	62.719	Mus_musculus
ENSCLAG00000014645	APOBEC1	99	61.404	MGP_PahariEiJ_G0022580	-	99	61.404	Mus_pahari
ENSCLAG00000014645	APOBEC1	99	62.719	MGP_SPRETEiJ_G0029857	Apobec1	99	62.719	Mus_spretus
ENSCLAG00000014645	APOBEC1	100	68.261	ENSMPUG00000017532	APOBEC1	97	68.261	Mustela_putorius_furo
ENSCLAG00000014645	APOBEC1	99	63.319	ENSNGAG00000022607	Apobec1	100	63.319	Nannospalax_galili
ENSCLAG00000014645	APOBEC1	100	70.870	ENSNLEG00000005342	APOBEC1	97	70.870	Nomascus_leucogenys
ENSCLAG00000014645	APOBEC1	99	58.952	ENSMEUG00000013406	APOBEC1	97	58.952	Notamacropus_eugenii
ENSCLAG00000014645	APOBEC1	79	59.116	ENSOPRG00000009508	-	100	59.116	Ochotona_princeps
ENSCLAG00000014645	APOBEC1	100	68.696	ENSOCUG00000025736	APOBEC1	86	68.696	Oryctolagus_cuniculus
ENSCLAG00000014645	APOBEC1	98	71.239	ENSOGAG00000026415	APOBEC1	96	71.239	Otolemur_garnettii
ENSCLAG00000014645	APOBEC1	99	65.502	ENSOARG00000002072	APOBEC1	96	65.502	Ovis_aries
ENSCLAG00000014645	APOBEC1	99	64.317	ENSPPAG00000027657	APOBEC1	96	64.317	Pan_paniscus
ENSCLAG00000014645	APOBEC1	99	70.742	ENSPPRG00000012182	APOBEC1	97	70.742	Panthera_pardus
ENSCLAG00000014645	APOBEC1	99	70.742	ENSPTIG00000020280	APOBEC1	97	70.742	Panthera_tigris_altaica
ENSCLAG00000014645	APOBEC1	100	71.304	ENSPTRG00000004614	APOBEC1	97	71.304	Pan_troglodytes
ENSCLAG00000014645	APOBEC1	99	71.179	ENSPANG00000021027	APOBEC1	97	71.179	Papio_anubis
ENSCLAG00000014645	APOBEC1	55	50.833	ENSPSIG00000012791	-	72	50.833	Pelodiscus_sinensis
ENSCLAG00000014645	APOBEC1	80	42.703	ENSPSIG00000012568	-	80	42.703	Pelodiscus_sinensis
ENSCLAG00000014645	APOBEC1	99	62.882	ENSPEMG00000023841	Apobec1	100	62.882	Peromyscus_maniculatus_bairdii
ENSCLAG00000014645	APOBEC1	99	62.882	ENSPCIG00000023973	APOBEC1	97	62.882	Phascolarctos_cinereus
ENSCLAG00000014645	APOBEC1	100	69.130	ENSPPYG00000004228	APOBEC1	93	69.130	Pongo_abelii
ENSCLAG00000014645	APOBEC1	81	69.519	ENSPCAG00000008733	APOBEC1	100	69.519	Procavia_capensis
ENSCLAG00000014645	APOBEC1	94	70.833	ENSPCOG00000013957	APOBEC1	96	70.833	Propithecus_coquereli
ENSCLAG00000014645	APOBEC1	100	52.321	ENSPVAG00000010709	APOBEC1	97	52.321	Pteropus_vampyrus
ENSCLAG00000014645	APOBEC1	99	60.965	ENSRNOG00000015411	Apobec1	99	60.965	Rattus_norvegicus
ENSCLAG00000014645	APOBEC1	99	70.306	ENSRBIG00000031161	APOBEC1	97	70.306	Rhinopithecus_bieti
ENSCLAG00000014645	APOBEC1	99	70.306	ENSRROG00000033576	APOBEC1	97	70.306	Rhinopithecus_roxellana
ENSCLAG00000014645	APOBEC1	75	69.942	ENSSBOG00000030587	APOBEC1	98	69.942	Saimiri_boliviensis_boliviensis
ENSCLAG00000014645	APOBEC1	96	62.727	ENSSHAG00000008925	APOBEC1	96	62.727	Sarcophilus_harrisii
ENSCLAG00000014645	APOBEC1	56	67.442	ENSSARG00000011972	-	98	67.442	Sorex_araneus
ENSCLAG00000014645	APOBEC1	75	62.791	ENSSARG00000000032	-	100	62.791	Sorex_araneus
ENSCLAG00000014645	APOBEC1	87	40.476	ENSSPUG00000009044	-	78	40.476	Sphenodon_punctatus
ENSCLAG00000014645	APOBEC1	99	69.869	ENSSSCG00000000668	APOBEC1	97	69.869	Sus_scrofa
ENSCLAG00000014645	APOBEC1	62	47.917	ENSTGUG00000013118	-	99	47.917	Taeniopygia_guttata
ENSCLAG00000014645	APOBEC1	99	64.629	ENSTBEG00000010043	APOBEC1	97	64.629	Tupaia_belangeri
ENSCLAG00000014645	APOBEC1	81	66.310	ENSTTRG00000014015	APOBEC1	100	66.310	Tursiops_truncatus
ENSCLAG00000014645	APOBEC1	98	69.333	ENSUAMG00000011636	APOBEC1	92	69.333	Ursus_americanus
ENSCLAG00000014645	APOBEC1	98	69.333	ENSUMAG00000016552	APOBEC1	92	69.333	Ursus_maritimus
ENSCLAG00000014645	APOBEC1	99	69.432	ENSVPAG00000001343	APOBEC1	97	69.432	Vicugna_pacos
ENSCLAG00000014645	APOBEC1	100	70.000	ENSVVUG00000010522	APOBEC1	97	70.000	Vulpes_vulpes