EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCLAG00000015759 (Gene tree)
Gene ID: 102007965
Gene Symbol: LSM12
Alias: FLJ30656
Full Name: LSM12 homolog
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Minus strand
Length: 18261 bases
Position: chrJH721911.1:17195287-17213547
Accession: 102007965
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000022964	AD	PF09793.9	1.8e-24	1	1
ENSCLAP00000022965	AD	PF09793.9	2.4e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000023180	LSM12-201	1104	XM_005394514	ENSCLAP00000022964	195 (aa)	XP_005394571	UPI00038ED3B4
ENSCLAT00000023181	LSM12-202	414	-	ENSCLAP00000022965	137 (aa)	-	-

Gene Model

Click here to download ENSCLAG00000015759's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000015759's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000015759	LSM12	100	98.974	ENSG00000161654	LSM12	100	98.974	Homo_sapiens
ENSCLAG00000015759	LSM12	100	85.714	ENSAPOG00000007907	lsm12b	100	85.714	Acanthochromis_polyacanthus
ENSCLAG00000015759	LSM12	100	98.165	ENSAMEG00000018321	LSM12	100	96.970	Ailuropoda_melanoleuca
ENSCLAG00000015759	LSM12	100	83.673	ENSACIG00000008538	lsm12b	100	83.673	Amphilophus_citrinellus
ENSCLAG00000015759	LSM12	100	85.204	ENSAOCG00000021847	lsm12b	88	85.204	Amphiprion_ocellaris
ENSCLAG00000015759	LSM12	100	85.204	ENSAPEG00000002252	lsm12b	100	85.204	Amphiprion_percula
ENSCLAG00000015759	LSM12	100	85.204	ENSATEG00000005705	lsm12b	100	85.204	Anabas_testudineus
ENSCLAG00000015759	LSM12	99	93.264	ENSACAG00000004618	LSM12	99	93.264	Anolis_carolinensis
ENSCLAG00000015759	LSM12	100	98.974	ENSANAG00000029011	LSM12	100	98.974	Aotus_nancymaae
ENSCLAG00000015759	LSM12	100	84.184	ENSACLG00000026332	lsm12b	100	84.184	Astatotilapia_calliptera
ENSCLAG00000015759	LSM12	100	84.184	ENSAMXG00000032952	lsm12b	100	84.184	Astyanax_mexicanus
ENSCLAG00000015759	LSM12	100	81.081	ENSAMXG00000036117	lsm12a	91	78.571	Astyanax_mexicanus
ENSCLAG00000015759	LSM12	100	98.974	ENSBTAG00000016252	LSM12	100	98.974	Bos_taurus
ENSCLAG00000015759	LSM12	100	98.974	ENSCJAG00000048480	LSM12	100	98.974	Callithrix_jacchus
ENSCLAG00000015759	LSM12	100	98.974	ENSCAFG00000014379	LSM12	92	98.974	Canis_familiaris
ENSCLAG00000015759	LSM12	100	98.974	ENSCAFG00020012173	LSM12	100	98.974	Canis_lupus_dingo
ENSCLAG00000015759	LSM12	100	98.974	ENSCHIG00000018175	LSM12	100	98.974	Capra_hircus
ENSCLAG00000015759	LSM12	100	98.974	ENSTSYG00000036361	LSM12	100	98.974	Carlito_syrichta
ENSCLAG00000015759	LSM12	81	98.198	ENSCAPG00000009647	LSM12	89	95.679	Cavia_aperea
ENSCLAG00000015759	LSM12	100	100.000	ENSCPOG00000012860	LSM12	100	100.000	Cavia_porcellus
ENSCLAG00000015759	LSM12	100	98.974	ENSCCAG00000032905	LSM12	100	98.974	Cebus_capucinus
ENSCLAG00000015759	LSM12	100	98.974	ENSCATG00000030577	-	100	98.974	Cercocebus_atys
ENSCLAG00000015759	LSM12	100	98.462	ENSCSAG00000003486	LSM12	100	98.462	Chlorocebus_sabaeus
ENSCLAG00000015759	LSM12	80	97.248	ENSCHOG00000001198	LSM12	100	97.248	Choloepus_hoffmanni
ENSCLAG00000015759	LSM12	99	93.264	ENSCPBG00000027105	LSM12	99	93.264	Chrysemys_picta_bellii
ENSCLAG00000015759	LSM12	100	98.974	ENSCANG00000043328	LSM12	100	98.974	Colobus_angolensis_palliatus
ENSCLAG00000015759	LSM12	100	98.974	ENSCGRG00001002094	Lsm12	100	98.974	Cricetulus_griseus_chok1gshd
ENSCLAG00000015759	LSM12	80	98.165	ENSCGRG00000004316	Lsm12	95	91.667	Cricetulus_griseus_crigri
ENSCLAG00000015759	LSM12	100	84.694	ENSCSEG00000008434	lsm12b	100	84.694	Cynoglossus_semilaevis
ENSCLAG00000015759	LSM12	100	84.545	ENSCVAG00000008755	lsm12b	100	84.184	Cyprinodon_variegatus
ENSCLAG00000015759	LSM12	100	84.694	ENSDARG00000109510	lsm12b	100	84.694	Danio_rerio
ENSCLAG00000015759	LSM12	100	76.531	ENSDARG00000028848	lsm12a	100	76.531	Danio_rerio
ENSCLAG00000015759	LSM12	100	98.462	ENSDNOG00000002418	LSM12	91	98.462	Dasypus_novemcinctus
ENSCLAG00000015759	LSM12	100	98.974	ENSDORG00000016381	Lsm12	100	98.974	Dipodomys_ordii
ENSCLAG00000015759	LSM12	83	33.133	FBgn0030364	Lsm12	76	32.934	Drosophila_melanogaster
ENSCLAG00000015759	LSM12	74	31.646	FBgn0036057	CG14164	83	31.646	Drosophila_melanogaster
ENSCLAG00000015759	LSM12	90	86.857	ENSETEG00000011012	-	100	86.857	Echinops_telfairi
ENSCLAG00000015759	LSM12	100	98.462	ENSETEG00000008374	LSM12	100	98.462	Echinops_telfairi
ENSCLAG00000015759	LSM12	84	63.415	ENSEBUG00000016299	lsm12a	92	63.415	Eptatretus_burgeri
ENSCLAG00000015759	LSM12	100	98.974	ENSEASG00005010155	LSM12	100	98.974	Equus_asinus_asinus
ENSCLAG00000015759	LSM12	100	98.974	ENSECAG00000009071	LSM12	100	98.974	Equus_caballus
ENSCLAG00000015759	LSM12	81	94.595	ENSEEUG00000002419	-	100	97.386	Erinaceus_europaeus
ENSCLAG00000015759	LSM12	100	83.673	ENSELUG00000015538	lsm12b	100	79.082	Esox_lucius
ENSCLAG00000015759	LSM12	100	81.633	ENSELUG00000000256	-	100	81.633	Esox_lucius
ENSCLAG00000015759	LSM12	100	98.974	ENSFCAG00000037021	LSM12	100	98.974	Felis_catus
ENSCLAG00000015759	LSM12	81	95.495	ENSFDAG00000008954	LSM12	87	97.973	Fukomys_damarensis
ENSCLAG00000015759	LSM12	100	83.636	ENSFHEG00000019913	lsm12b	100	83.163	Fundulus_heteroclitus
ENSCLAG00000015759	LSM12	81	83.784	ENSGMOG00000015449	lsm12b	100	83.544	Gadus_morhua
ENSCLAG00000015759	LSM12	80	92.661	ENSGALG00000039803	LSM12	100	94.118	Gallus_gallus
ENSCLAG00000015759	LSM12	100	84.545	ENSGAFG00000011829	lsm12b	100	83.673	Gambusia_affinis
ENSCLAG00000015759	LSM12	81	84.177	ENSGACG00000003428	lsm12b	100	84.177	Gasterosteus_aculeatus
ENSCLAG00000015759	LSM12	99	94.301	ENSGAGG00000021965	LSM12	99	94.301	Gopherus_agassizii
ENSCLAG00000015759	LSM12	100	98.974	ENSGGOG00000010589	-	100	98.974	Gorilla_gorilla
ENSCLAG00000015759	LSM12	85	85.629	ENSHBUG00000007667	lsm12b	74	85.629	Haplochromis_burtoni
ENSCLAG00000015759	LSM12	100	98.974	ENSHGLG00000011411	LSM12	100	98.974	Heterocephalus_glaber_female
ENSCLAG00000015759	LSM12	80	97.273	ENSHGLG00100000241	LSM12	96	86.188	Heterocephalus_glaber_male
ENSCLAG00000015759	LSM12	100	83.673	ENSHCOG00000002094	lsm12b	100	83.673	Hippocampus_comes
ENSCLAG00000015759	LSM12	99	77.778	ENSIPUG00000008936	lsm12a	99	75.773	Ictalurus_punctatus
ENSCLAG00000015759	LSM12	100	84.694	ENSIPUG00000014800	lsm12	100	84.694	Ictalurus_punctatus
ENSCLAG00000015759	LSM12	100	98.974	ENSSTOG00000007403	LSM12	100	98.974	Ictidomys_tridecemlineatus
ENSCLAG00000015759	LSM12	81	84.906	ENSJJAG00000014652	-	95	84.906	Jaculus_jaculus
ENSCLAG00000015759	LSM12	100	97.949	ENSJJAG00000004364	-	100	97.949	Jaculus_jaculus
ENSCLAG00000015759	LSM12	97	86.842	ENSJJAG00000011793	-	100	86.842	Jaculus_jaculus
ENSCLAG00000015759	LSM12	89	84.091	ENSKMAG00000007704	lsm12b	59	84.091	Kryptolebias_marmoratus
ENSCLAG00000015759	LSM12	100	85.204	ENSLBEG00000027999	lsm12b	100	85.204	Labrus_bergylta
ENSCLAG00000015759	LSM12	99	90.909	ENSLACG00000015981	LSM12	99	90.155	Latimeria_chalumnae
ENSCLAG00000015759	LSM12	100	85.586	ENSLOCG00000013079	lsm12b	99	83.163	Lepisosteus_oculatus
ENSCLAG00000015759	LSM12	100	98.974	ENSLAFG00000005202	LSM12	100	98.974	Loxodonta_africana
ENSCLAG00000015759	LSM12	100	98.974	ENSMFAG00000031376	LSM12	100	98.974	Macaca_fascicularis
ENSCLAG00000015759	LSM12	100	66.423	ENSMMUG00000042106	-	100	83.908	Macaca_mulatta
ENSCLAG00000015759	LSM12	100	98.974	ENSMMUG00000006804	LSM12	100	98.974	Macaca_mulatta
ENSCLAG00000015759	LSM12	100	65.693	ENSMMUG00000038408	-	100	83.908	Macaca_mulatta
ENSCLAG00000015759	LSM12	100	98.974	ENSMNEG00000030594	-	100	98.974	Macaca_nemestrina
ENSCLAG00000015759	LSM12	100	98.974	ENSMLEG00000039934	LSM12	100	98.974	Mandrillus_leucophaeus
ENSCLAG00000015759	LSM12	100	84.694	ENSMAMG00000004279	lsm12b	100	84.694	Mastacembelus_armatus
ENSCLAG00000015759	LSM12	100	84.184	ENSMZEG00005005754	lsm12b	100	84.184	Maylandia_zebra
ENSCLAG00000015759	LSM12	100	98.462	ENSMICG00000037219	LSM12	100	98.462	Microcebus_murinus
ENSCLAG00000015759	LSM12	100	98.974	ENSMOCG00000019878	-	100	98.974	Microtus_ochrogaster
ENSCLAG00000015759	LSM12	100	83.077	ENSMOCG00000017015	-	86	83.077	Microtus_ochrogaster
ENSCLAG00000015759	LSM12	100	84.694	ENSMMOG00000020848	lsm12b	100	84.694	Mola_mola
ENSCLAG00000015759	LSM12	100	84.694	ENSMALG00000007578	lsm12b	100	84.694	Monopterus_albus
ENSCLAG00000015759	LSM12	100	98.462	MGP_CAROLIEiJ_G0017241	Lsm12	100	98.462	Mus_caroli
ENSCLAG00000015759	LSM12	100	98.974	ENSMUSG00000020922	Lsm12	100	98.974	Mus_musculus
ENSCLAG00000015759	LSM12	100	98.540	MGP_PahariEiJ_G0018371	Lsm12	100	98.540	Mus_pahari
ENSCLAG00000015759	LSM12	100	98.462	MGP_SPRETEiJ_G0018084	Lsm12	99	100.000	Mus_spretus
ENSCLAG00000015759	LSM12	100	98.462	ENSMLUG00000006391	LSM12	100	98.462	Myotis_lucifugus
ENSCLAG00000015759	LSM12	100	66.832	ENSNGAG00000015429	-	100	66.832	Nannospalax_galili
ENSCLAG00000015759	LSM12	100	98.974	ENSNGAG00000001870	Lsm12	100	98.974	Nannospalax_galili
ENSCLAG00000015759	LSM12	100	84.184	ENSNBRG00000006266	lsm12b	100	84.184	Neolamprologus_brichardi
ENSCLAG00000015759	LSM12	100	98.974	ENSNLEG00000005580	-	100	98.974	Nomascus_leucogenys
ENSCLAG00000015759	LSM12	85	98.182	ENSMEUG00000007501	-	100	98.182	Notamacropus_eugenii
ENSCLAG00000015759	LSM12	100	98.974	ENSOPRG00000008552	LSM12	100	98.974	Ochotona_princeps
ENSCLAG00000015759	LSM12	100	88.718	ENSODEG00000007886	-	74	88.718	Octodon_degus
ENSCLAG00000015759	LSM12	100	98.462	ENSODEG00000017998	-	100	98.462	Octodon_degus
ENSCLAG00000015759	LSM12	100	84.184	ENSONIG00000007933	lsm12b	100	84.184	Oreochromis_niloticus
ENSCLAG00000015759	LSM12	54	95.946	ENSOANG00000031724	-	100	90.123	Ornithorhynchus_anatinus
ENSCLAG00000015759	LSM12	99	92.268	ENSOCUG00000021254	-	100	92.268	Oryctolagus_cuniculus
ENSCLAG00000015759	LSM12	100	98.165	ENSOCUG00000008566	-	100	96.970	Oryctolagus_cuniculus
ENSCLAG00000015759	LSM12	99	92.268	ENSOCUG00000027889	-	100	92.268	Oryctolagus_cuniculus
ENSCLAG00000015759	LSM12	99	91.237	ENSOCUG00000024823	-	100	91.237	Oryctolagus_cuniculus
ENSCLAG00000015759	LSM12	100	85.204	ENSORLG00000011310	lsm12b	100	85.204	Oryzias_latipes
ENSCLAG00000015759	LSM12	100	85.204	ENSORLG00020002060	lsm12b	92	85.204	Oryzias_latipes_hni
ENSCLAG00000015759	LSM12	100	85.204	ENSORLG00015001647	lsm12b	92	85.204	Oryzias_latipes_hsok
ENSCLAG00000015759	LSM12	100	85.204	ENSOMEG00000006184	lsm12b	92	85.204	Oryzias_melastigma
ENSCLAG00000015759	LSM12	100	98.462	ENSOGAG00000010489	LSM12	100	98.462	Otolemur_garnettii
ENSCLAG00000015759	LSM12	100	98.165	ENSOARG00000006589	LSM12	100	95.522	Ovis_aries
ENSCLAG00000015759	LSM12	100	90.845	ENSPPAG00000034974	-	92	100.000	Pan_paniscus
ENSCLAG00000015759	LSM12	100	98.974	ENSPPRG00000023420	LSM12	100	98.974	Panthera_pardus
ENSCLAG00000015759	LSM12	100	97.080	ENSPTIG00000014850	-	100	97.080	Panthera_tigris_altaica
ENSCLAG00000015759	LSM12	81	96.396	ENSPTIG00000012704	-	82	98.693	Panthera_tigris_altaica
ENSCLAG00000015759	LSM12	100	98.974	ENSPTRG00000009261	LSM12	100	98.974	Pan_troglodytes
ENSCLAG00000015759	LSM12	100	98.974	ENSPANG00000021315	-	100	98.974	Papio_anubis
ENSCLAG00000015759	LSM12	99	77.320	ENSPKIG00000017932	-	99	77.320	Paramormyrops_kingsleyae
ENSCLAG00000015759	LSM12	100	85.714	ENSPKIG00000021058	lsm12b	100	85.714	Paramormyrops_kingsleyae
ENSCLAG00000015759	LSM12	100	84.694	ENSPMGG00000021344	lsm12b	100	84.694	Periophthalmus_magnuspinnatus
ENSCLAG00000015759	LSM12	100	98.974	ENSPEMG00000012199	Lsm12	100	98.974	Peromyscus_maniculatus_bairdii
ENSCLAG00000015759	LSM12	88	65.698	ENSPMAG00000005461	lsm12a	99	65.698	Petromyzon_marinus
ENSCLAG00000015759	LSM12	100	96.923	ENSPCIG00000020244	LSM12	100	96.923	Phascolarctos_cinereus
ENSCLAG00000015759	LSM12	100	83.784	ENSPFOG00000015930	lsm12b	100	82.653	Poecilia_formosa
ENSCLAG00000015759	LSM12	100	83.784	ENSPLAG00000021089	lsm12b	100	82.653	Poecilia_latipinna
ENSCLAG00000015759	LSM12	100	83.784	ENSPMEG00000012961	lsm12b	100	82.653	Poecilia_mexicana
ENSCLAG00000015759	LSM12	88	84.795	ENSPREG00000010236	lsm12b	95	84.795	Poecilia_reticulata
ENSCLAG00000015759	LSM12	100	98.974	ENSPPYG00000008344	LSM12	100	98.974	Pongo_abelii
ENSCLAG00000015759	LSM12	82	99.371	ENSPCAG00000008790	LSM12	100	99.371	Procavia_capensis
ENSCLAG00000015759	LSM12	100	98.974	ENSPCOG00000027951	LSM12	100	98.974	Propithecus_coquereli
ENSCLAG00000015759	LSM12	100	98.462	ENSPVAG00000013706	LSM12	100	98.462	Pteropus_vampyrus
ENSCLAG00000015759	LSM12	100	84.184	ENSPNYG00000003386	lsm12b	100	84.184	Pundamilia_nyererei
ENSCLAG00000015759	LSM12	100	81.982	ENSPNAG00000018435	lsm12a	100	77.041	Pygocentrus_nattereri
ENSCLAG00000015759	LSM12	100	83.636	ENSPNAG00000004186	lsm12b	100	82.653	Pygocentrus_nattereri
ENSCLAG00000015759	LSM12	100	98.974	ENSRNOG00000020894	Lsm12	100	98.974	Rattus_norvegicus
ENSCLAG00000015759	LSM12	100	98.974	ENSRBIG00000027910	LSM12	100	98.974	Rhinopithecus_bieti
ENSCLAG00000015759	LSM12	100	81.752	ENSRROG00000000537	-	100	81.752	Rhinopithecus_roxellana
ENSCLAG00000015759	LSM12	100	98.974	ENSRROG00000045530	-	100	98.974	Rhinopithecus_roxellana
ENSCLAG00000015759	LSM12	77	33.051	YHR121W	-	61	33.051	Saccharomyces_cerevisiae
ENSCLAG00000015759	LSM12	100	98.974	ENSSBOG00000025310	LSM12	100	98.974	Saimiri_boliviensis_boliviensis
ENSCLAG00000015759	LSM12	81	94.595	ENSSHAG00000014914	LSM12	100	94.304	Sarcophilus_harrisii
ENSCLAG00000015759	LSM12	100	85.714	ENSSFOG00015009612	lsm12	100	85.714	Scleropages_formosus
ENSCLAG00000015759	LSM12	100	83.673	ENSSFOG00015020392	lsm12a	100	83.673	Scleropages_formosus
ENSCLAG00000015759	LSM12	100	84.694	ENSSMAG00000008089	lsm12b	100	84.694	Scophthalmus_maximus
ENSCLAG00000015759	LSM12	100	85.714	ENSSDUG00000012711	lsm12b	100	85.714	Seriola_dumerili
ENSCLAG00000015759	LSM12	100	85.714	ENSSLDG00000007404	lsm12b	100	85.714	Seriola_lalandi_dorsalis
ENSCLAG00000015759	LSM12	81	96.396	ENSSARG00000005537	LSM12	100	98.039	Sorex_araneus
ENSCLAG00000015759	LSM12	99	94.819	ENSSPUG00000011984	LSM12	99	94.819	Sphenodon_punctatus
ENSCLAG00000015759	LSM12	100	85.204	ENSSPAG00000017058	lsm12b	100	85.204	Stegastes_partitus
ENSCLAG00000015759	LSM12	100	98.974	ENSSSCG00000032394	LSM12	100	98.974	Sus_scrofa
ENSCLAG00000015759	LSM12	100	83.673	ENSTRUG00000007121	lsm12b	100	83.673	Takifugu_rubripes
ENSCLAG00000015759	LSM12	100	84.184	ENSTNIG00000014436	lsm12b	100	84.184	Tetraodon_nigroviridis
ENSCLAG00000015759	LSM12	100	95.385	ENSTBEG00000012392	-	100	95.385	Tupaia_belangeri
ENSCLAG00000015759	LSM12	100	98.462	ENSTBEG00000012523	-	100	98.462	Tupaia_belangeri
ENSCLAG00000015759	LSM12	100	98.974	ENSTTRG00000010433	LSM12	100	98.974	Tursiops_truncatus
ENSCLAG00000015759	LSM12	100	98.974	ENSUAMG00000006313	LSM12	100	98.974	Ursus_americanus
ENSCLAG00000015759	LSM12	81	96.396	ENSUMAG00000012987	LSM12	90	95.570	Ursus_maritimus
ENSCLAG00000015759	LSM12	100	93.333	ENSVPAG00000011145	LSM12	100	93.333	Vicugna_pacos
ENSCLAG00000015759	LSM12	100	98.974	ENSVVUG00000017581	LSM12	100	98.974	Vulpes_vulpes
ENSCLAG00000015759	LSM12	80	83.486	ENSXETG00000003371	lsm12	77	65.000	Xenopus_tropicalis
ENSCLAG00000015759	LSM12	100	84.545	ENSXCOG00000003994	lsm12b	100	83.673	Xiphophorus_couchianus
ENSCLAG00000015759	LSM12	100	84.545	ENSXMAG00000020950	lsm12b	100	83.673	Xiphophorus_maculatus