EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCLAG00000016553 (Gene tree)
Gene ID: 102028282
Gene Symbol: RPUSD4
Alias: FLJ14494
Full Name: RNA pseudouridine synthase D4
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Minus strand
Length: 9848 bases
Position: chrJH721872.1:27229492-27239339
Accession: 102028282
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000024113	PseudoU_synth_2	PF00849.22	4.8e-33	1	1
ENSCLAP00000024112	PseudoU_synth_2	PF00849.22	7.1e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000024345	RPUSD4-202	3651	XM_005378485	ENSCLAP00000024113	377 (aa)	XP_005378542	UPI00038EC7CA
ENSCLAT00000024344	RPUSD4-201	3726	-	ENSCLAP00000024112	402 (aa)	-	-

Gene Model

Click here to download ENSCLAG00000016553's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000016553's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000016553	RPUSD4	100	83.820	ENSG00000165526	RPUSD4	100	83.820	Homo_sapiens
ENSCLAG00000016553	RPUSD4	93	51.549	ENSAPOG00000011024	rpusd4	88	51.549	Acanthochromis_polyacanthus
ENSCLAG00000016553	RPUSD4	100	83.289	ENSAMEG00000000127	-	100	83.289	Ailuropoda_melanoleuca
ENSCLAG00000016553	RPUSD4	67	80.690	ENSAMEG00000005953	-	100	80.690	Ailuropoda_melanoleuca
ENSCLAG00000016553	RPUSD4	85	51.227	ENSACIG00000003533	rpusd4	95	51.227	Amphilophus_citrinellus
ENSCLAG00000016553	RPUSD4	88	53.687	ENSAOCG00000015409	rpusd4	83	53.687	Amphiprion_ocellaris
ENSCLAG00000016553	RPUSD4	88	53.687	ENSAPEG00000018935	rpusd4	83	53.687	Amphiprion_percula
ENSCLAG00000016553	RPUSD4	88	51.917	ENSATEG00000008059	rpusd4	83	51.917	Anabas_testudineus
ENSCLAG00000016553	RPUSD4	73	59.857	ENSAPLG00000013250	RPUSD4	99	58.644	Anas_platyrhynchos
ENSCLAG00000016553	RPUSD4	88	64.179	ENSACAG00000000189	RPUSD4	92	64.179	Anolis_carolinensis
ENSCLAG00000016553	RPUSD4	99	82.527	ENSANAG00000024050	RPUSD4	100	82.527	Aotus_nancymaae
ENSCLAG00000016553	RPUSD4	88	52.212	ENSACLG00000020996	rpusd4	86	52.212	Astatotilapia_calliptera
ENSCLAG00000016553	RPUSD4	90	51.873	ENSAMXG00000031479	rpusd4	95	52.367	Astyanax_mexicanus
ENSCLAG00000016553	RPUSD4	98	79.839	ENSBTAG00000020900	RPUSD4	98	79.839	Bos_taurus
ENSCLAG00000016553	RPUSD4	98	82.432	ENSCJAG00000042850	RPUSD4	93	82.432	Callithrix_jacchus
ENSCLAG00000016553	RPUSD4	100	82.540	ENSCAFG00000010488	RPUSD4	100	82.540	Canis_familiaris
ENSCLAG00000016553	RPUSD4	100	82.540	ENSCAFG00020010621	RPUSD4	100	82.540	Canis_lupus_dingo
ENSCLAG00000016553	RPUSD4	98	80.429	ENSCHIG00000009975	RPUSD4	98	80.429	Capra_hircus
ENSCLAG00000016553	RPUSD4	100	85.146	ENSTSYG00000008456	RPUSD4	100	85.146	Carlito_syrichta
ENSCLAG00000016553	RPUSD4	68	88.760	ENSCAPG00000006040	RPUSD4	100	88.760	Cavia_aperea
ENSCLAG00000016553	RPUSD4	100	90.186	ENSCPOG00000014971	RPUSD4	100	90.186	Cavia_porcellus
ENSCLAG00000016553	RPUSD4	99	82.796	ENSCCAG00000027838	RPUSD4	100	82.796	Cebus_capucinus
ENSCLAG00000016553	RPUSD4	100	83.554	ENSCATG00000041570	RPUSD4	100	83.554	Cercocebus_atys
ENSCLAG00000016553	RPUSD4	100	82.759	ENSCSAG00000002274	RPUSD4	100	82.759	Chlorocebus_sabaeus
ENSCLAG00000016553	RPUSD4	75	83.392	ENSCHOG00000010249	RPUSD4	100	83.392	Choloepus_hoffmanni
ENSCLAG00000016553	RPUSD4	76	67.820	ENSCPBG00000011175	RPUSD4	99	67.820	Chrysemys_picta_bellii
ENSCLAG00000016553	RPUSD4	76	42.517	ENSCSAVG00000000872	-	57	42.517	Ciona_savignyi
ENSCLAG00000016553	RPUSD4	100	81.698	ENSCANG00000039684	RPUSD4	100	81.698	Colobus_angolensis_palliatus
ENSCLAG00000016553	RPUSD4	100	83.554	ENSCGRG00001024141	Rpusd4	100	83.554	Cricetulus_griseus_chok1gshd
ENSCLAG00000016553	RPUSD4	100	83.554	ENSCGRG00000014415	Rpusd4	100	83.554	Cricetulus_griseus_crigri
ENSCLAG00000016553	RPUSD4	51	45.128	ENSCSEG00000006462	-	85	45.641	Cynoglossus_semilaevis
ENSCLAG00000016553	RPUSD4	88	51.929	ENSCVAG00000008761	rpusd4	86	51.929	Cyprinodon_variegatus
ENSCLAG00000016553	RPUSD4	88	52.226	ENSCVAG00000000392	rpusd4	95	52.226	Cyprinodon_variegatus
ENSCLAG00000016553	RPUSD4	92	48.571	ENSDARG00000012674	rpusd4	97	48.571	Danio_rerio
ENSCLAG00000016553	RPUSD4	100	79.310	ENSDNOG00000020026	RPUSD4	100	79.310	Dasypus_novemcinctus
ENSCLAG00000016553	RPUSD4	98	81.402	ENSDORG00000016717	Rpusd4	98	81.402	Dipodomys_ordii
ENSCLAG00000016553	RPUSD4	98	79.893	ENSETEG00000013953	RPUSD4	99	79.893	Echinops_telfairi
ENSCLAG00000016553	RPUSD4	100	84.085	ENSEASG00005022982	RPUSD4	100	84.085	Equus_asinus_asinus
ENSCLAG00000016553	RPUSD4	100	83.820	ENSECAG00000000557	RPUSD4	100	83.820	Equus_caballus
ENSCLAG00000016553	RPUSD4	76	81.818	ENSEEUG00000014036	RPUSD4	76	81.818	Erinaceus_europaeus
ENSCLAG00000016553	RPUSD4	96	53.067	ENSELUG00000008075	rpusd4	98	53.067	Esox_lucius
ENSCLAG00000016553	RPUSD4	100	81.698	ENSFCAG00000029789	RPUSD4	100	81.698	Felis_catus
ENSCLAG00000016553	RPUSD4	88	57.958	ENSFALG00000005171	RPUSD4	98	57.958	Ficedula_albicollis
ENSCLAG00000016553	RPUSD4	100	88.329	ENSFDAG00000014307	RPUSD4	100	88.329	Fukomys_damarensis
ENSCLAG00000016553	RPUSD4	88	52.507	ENSFHEG00000004329	rpusd4	87	52.507	Fundulus_heteroclitus
ENSCLAG00000016553	RPUSD4	85	52.454	ENSGMOG00000017726	rpusd4	96	52.454	Gadus_morhua
ENSCLAG00000016553	RPUSD4	74	62.057	ENSGALG00000024326	RPUSD4	95	56.932	Gallus_gallus
ENSCLAG00000016553	RPUSD4	88	49.271	ENSGAFG00000021559	rpusd4	87	49.271	Gambusia_affinis
ENSCLAG00000016553	RPUSD4	89	50.588	ENSGACG00000001657	rpusd4	100	50.882	Gasterosteus_aculeatus
ENSCLAG00000016553	RPUSD4	94	62.254	ENSGAGG00000000132	RPUSD4	98	62.254	Gopherus_agassizii
ENSCLAG00000016553	RPUSD4	100	83.554	ENSGGOG00000016494	RPUSD4	100	83.554	Gorilla_gorilla
ENSCLAG00000016553	RPUSD4	88	52.212	ENSHBUG00000022838	rpusd4	86	52.212	Haplochromis_burtoni
ENSCLAG00000016553	RPUSD4	100	89.920	ENSHGLG00000002285	RPUSD4	100	89.920	Heterocephalus_glaber_female
ENSCLAG00000016553	RPUSD4	100	89.920	ENSHGLG00100006385	RPUSD4	100	89.920	Heterocephalus_glaber_male
ENSCLAG00000016553	RPUSD4	87	52.853	ENSHCOG00000006612	rpusd4	84	52.853	Hippocampus_comes
ENSCLAG00000016553	RPUSD4	92	53.582	ENSIPUG00000023879	rusd4	90	53.582	Ictalurus_punctatus
ENSCLAG00000016553	RPUSD4	97	85.165	ENSSTOG00000025280	RPUSD4	100	85.165	Ictidomys_tridecemlineatus
ENSCLAG00000016553	RPUSD4	99	84.140	ENSJJAG00000018673	Rpusd4	100	84.140	Jaculus_jaculus
ENSCLAG00000016553	RPUSD4	89	53.235	ENSKMAG00000021805	rpusd4	88	53.235	Kryptolebias_marmoratus
ENSCLAG00000016553	RPUSD4	92	50.425	ENSLBEG00000020394	rpusd4	98	50.425	Labrus_bergylta
ENSCLAG00000016553	RPUSD4	85	62.229	ENSLACG00000011028	RPUSD4	85	61.012	Latimeria_chalumnae
ENSCLAG00000016553	RPUSD4	85	49.231	ENSLOCG00000003124	rpusd4	86	49.231	Lepisosteus_oculatus
ENSCLAG00000016553	RPUSD4	100	79.576	ENSLAFG00000005211	RPUSD4	100	79.576	Loxodonta_africana
ENSCLAG00000016553	RPUSD4	100	84.085	ENSMFAG00000039513	RPUSD4	100	84.085	Macaca_fascicularis
ENSCLAG00000016553	RPUSD4	100	83.820	ENSMMUG00000007933	RPUSD4	100	83.820	Macaca_mulatta
ENSCLAG00000016553	RPUSD4	100	83.820	ENSMNEG00000027414	RPUSD4	100	83.820	Macaca_nemestrina
ENSCLAG00000016553	RPUSD4	100	83.554	ENSMLEG00000042461	RPUSD4	100	83.554	Mandrillus_leucophaeus
ENSCLAG00000016553	RPUSD4	93	48.611	ENSMAMG00000023839	rpusd4	93	48.611	Mastacembelus_armatus
ENSCLAG00000016553	RPUSD4	88	52.212	ENSMZEG00005011999	rpusd4	86	52.212	Maylandia_zebra
ENSCLAG00000016553	RPUSD4	74	60.714	ENSMGAG00000000840	RPUSD4	99	57.716	Meleagris_gallopavo
ENSCLAG00000016553	RPUSD4	100	81.963	ENSMAUG00000010280	Rpusd4	100	81.963	Mesocricetus_auratus
ENSCLAG00000016553	RPUSD4	100	84.085	ENSMICG00000015979	RPUSD4	100	84.085	Microcebus_murinus
ENSCLAG00000016553	RPUSD4	100	78.780	ENSMOCG00000000661	Rpusd4	100	78.780	Microtus_ochrogaster
ENSCLAG00000016553	RPUSD4	81	54.019	ENSMMOG00000021731	rpusd4	92	54.019	Mola_mola
ENSCLAG00000016553	RPUSD4	92	72.911	ENSMODG00000004521	RPUSD4	89	72.911	Monodelphis_domestica
ENSCLAG00000016553	RPUSD4	80	54.072	ENSMALG00000005839	rpusd4	97	52.632	Monopterus_albus
ENSCLAG00000016553	RPUSD4	100	79.841	MGP_CAROLIEiJ_G0031954	Rpusd4	100	79.841	Mus_caroli
ENSCLAG00000016553	RPUSD4	100	79.310	ENSMUSG00000032044	Rpusd4	100	79.310	Mus_musculus
ENSCLAG00000016553	RPUSD4	100	80.106	MGP_PahariEiJ_G0014819	Rpusd4	100	80.106	Mus_pahari
ENSCLAG00000016553	RPUSD4	100	79.841	MGP_SPRETEiJ_G0033078	Rpusd4	100	79.841	Mus_spretus
ENSCLAG00000016553	RPUSD4	98	81.671	ENSMPUG00000006608	RPUSD4	99	81.671	Mustela_putorius_furo
ENSCLAG00000016553	RPUSD4	67	84.252	ENSMLUG00000029348	-	100	84.252	Myotis_lucifugus
ENSCLAG00000016553	RPUSD4	97	81.471	ENSMLUG00000017328	-	97	81.471	Myotis_lucifugus
ENSCLAG00000016553	RPUSD4	98	81.649	ENSNGAG00000020847	Rpusd4	98	81.649	Nannospalax_galili
ENSCLAG00000016553	RPUSD4	86	53.191	ENSNBRG00000005207	rpusd4	95	53.191	Neolamprologus_brichardi
ENSCLAG00000016553	RPUSD4	100	83.024	ENSNLEG00000007465	RPUSD4	100	83.024	Nomascus_leucogenys
ENSCLAG00000016553	RPUSD4	98	70.000	ENSMEUG00000004370	RPUSD4	99	70.000	Notamacropus_eugenii
ENSCLAG00000016553	RPUSD4	70	61.132	ENSOPRG00000013141	-	100	61.132	Ochotona_princeps
ENSCLAG00000016553	RPUSD4	100	90.186	ENSODEG00000004577	RPUSD4	100	90.186	Octodon_degus
ENSCLAG00000016553	RPUSD4	89	52.059	ENSONIG00000018879	rpusd4	91	52.059	Oreochromis_niloticus
ENSCLAG00000016553	RPUSD4	77	70.169	ENSOANG00000007247	RPUSD4	95	70.034	Ornithorhynchus_anatinus
ENSCLAG00000016553	RPUSD4	99	84.225	ENSOCUG00000017039	RPUSD4	99	84.225	Oryctolagus_cuniculus
ENSCLAG00000016553	RPUSD4	92	49.438	ENSORLG00000002750	rpusd4	92	51.488	Oryzias_latipes
ENSCLAG00000016553	RPUSD4	92	49.014	ENSORLG00020002044	rpusd4	89	49.014	Oryzias_latipes_hni
ENSCLAG00000016553	RPUSD4	87	50.292	ENSORLG00015020034	rpusd4	85	50.292	Oryzias_latipes_hsok
ENSCLAG00000016553	RPUSD4	92	51.397	ENSOMEG00000004861	rpusd4	88	51.397	Oryzias_melastigma
ENSCLAG00000016553	RPUSD4	100	82.804	ENSOGAG00000008922	RPUSD4	100	82.804	Otolemur_garnettii
ENSCLAG00000016553	RPUSD4	96	81.267	ENSOARG00000012238	RPUSD4	96	81.096	Ovis_aries
ENSCLAG00000016553	RPUSD4	100	84.085	ENSPPAG00000042883	RPUSD4	93	84.085	Pan_paniscus
ENSCLAG00000016553	RPUSD4	100	82.228	ENSPPRG00000003081	RPUSD4	100	82.228	Panthera_pardus
ENSCLAG00000016553	RPUSD4	100	82.228	ENSPTIG00000012059	RPUSD4	100	82.228	Panthera_tigris_altaica
ENSCLAG00000016553	RPUSD4	100	83.820	ENSPTRG00000004454	RPUSD4	100	83.820	Pan_troglodytes
ENSCLAG00000016553	RPUSD4	100	84.350	ENSPANG00000015040	RPUSD4	100	84.350	Papio_anubis
ENSCLAG00000016553	RPUSD4	89	57.988	ENSPKIG00000023986	rpusd4	86	57.988	Paramormyrops_kingsleyae
ENSCLAG00000016553	RPUSD4	79	66.667	ENSPSIG00000014268	RPUSD4	95	66.667	Pelodiscus_sinensis
ENSCLAG00000016553	RPUSD4	86	51.976	ENSPMGG00000002806	rpusd4	91	51.829	Periophthalmus_magnuspinnatus
ENSCLAG00000016553	RPUSD4	100	73.475	ENSPEMG00000000278	Rpusd4	100	73.475	Peromyscus_maniculatus_bairdii
ENSCLAG00000016553	RPUSD4	80	46.866	ENSPMAG00000008183	rpusd4	97	46.866	Petromyzon_marinus
ENSCLAG00000016553	RPUSD4	97	72.253	ENSPCIG00000010212	RPUSD4	100	72.253	Phascolarctos_cinereus
ENSCLAG00000016553	RPUSD4	94	46.547	ENSPFOG00000019030	rpusd4	95	46.547	Poecilia_formosa
ENSCLAG00000016553	RPUSD4	88	51.895	ENSPLAG00000016848	rpusd4	87	51.895	Poecilia_latipinna
ENSCLAG00000016553	RPUSD4	88	50.729	ENSPMEG00000017534	rpusd4	87	50.729	Poecilia_mexicana
ENSCLAG00000016553	RPUSD4	91	49.718	ENSPREG00000005689	rpusd4	91	49.718	Poecilia_reticulata
ENSCLAG00000016553	RPUSD4	100	83.554	ENSPPYG00000004043	RPUSD4	100	83.554	Pongo_abelii
ENSCLAG00000016553	RPUSD4	80	80.435	ENSPCAG00000000753	RPUSD4	81	80.435	Procavia_capensis
ENSCLAG00000016553	RPUSD4	98	78.976	ENSPCOG00000020694	RPUSD4	100	78.976	Propithecus_coquereli
ENSCLAG00000016553	RPUSD4	98	83.243	ENSPVAG00000000988	RPUSD4	99	83.243	Pteropus_vampyrus
ENSCLAG00000016553	RPUSD4	88	51.622	ENSPNYG00000009652	rpusd4	86	51.622	Pundamilia_nyererei
ENSCLAG00000016553	RPUSD4	96	50.685	ENSPNAG00000012264	rpusd4	95	50.685	Pygocentrus_nattereri
ENSCLAG00000016553	RPUSD4	100	80.371	ENSRNOG00000011567	Rpusd4	100	80.371	Rattus_norvegicus
ENSCLAG00000016553	RPUSD4	100	83.554	ENSRBIG00000034842	RPUSD4	100	83.554	Rhinopithecus_bieti
ENSCLAG00000016553	RPUSD4	100	83.554	ENSRROG00000039753	RPUSD4	100	83.554	Rhinopithecus_roxellana
ENSCLAG00000016553	RPUSD4	99	81.183	ENSSBOG00000030413	RPUSD4	100	81.183	Saimiri_boliviensis_boliviensis
ENSCLAG00000016553	RPUSD4	80	75.748	ENSSHAG00000008304	RPUSD4	99	75.748	Sarcophilus_harrisii
ENSCLAG00000016553	RPUSD4	88	56.637	ENSSFOG00015006203	rpusd4	92	56.637	Scleropages_formosus
ENSCLAG00000016553	RPUSD4	89	51.176	ENSSMAG00000020978	rpusd4	88	51.176	Scophthalmus_maximus
ENSCLAG00000016553	RPUSD4	84	51.393	ENSSDUG00000013399	rpusd4	84	51.393	Seriola_dumerili
ENSCLAG00000016553	RPUSD4	84	51.703	ENSSLDG00000023507	rpusd4	84	51.703	Seriola_lalandi_dorsalis
ENSCLAG00000016553	RPUSD4	89	60.882	ENSSPUG00000001401	RPUSD4	94	61.471	Sphenodon_punctatus
ENSCLAG00000016553	RPUSD4	93	52.381	ENSSPAG00000012163	rpusd4	91	52.381	Stegastes_partitus
ENSCLAG00000016553	RPUSD4	98	84.097	ENSSSCG00000015233	RPUSD4	98	84.097	Sus_scrofa
ENSCLAG00000016553	RPUSD4	79	60.333	ENSTGUG00000000773	RPUSD4	100	60.333	Taeniopygia_guttata
ENSCLAG00000016553	RPUSD4	86	52.121	ENSTRUG00000012283	rpusd4	84	52.121	Takifugu_rubripes
ENSCLAG00000016553	RPUSD4	90	49.568	ENSTNIG00000014676	rpusd4	88	49.568	Tetraodon_nigroviridis
ENSCLAG00000016553	RPUSD4	100	81.432	ENSTTRG00000001555	RPUSD4	100	81.432	Tursiops_truncatus
ENSCLAG00000016553	RPUSD4	100	82.759	ENSUMAG00000002219	RPUSD4	100	82.759	Ursus_maritimus
ENSCLAG00000016553	RPUSD4	70	86.038	ENSVPAG00000001066	RPUSD4	100	86.038	Vicugna_pacos
ENSCLAG00000016553	RPUSD4	100	82.011	ENSVVUG00000020101	RPUSD4	100	82.011	Vulpes_vulpes
ENSCLAG00000016553	RPUSD4	96	47.895	ENSXCOG00000004676	rpusd4	99	47.895	Xiphophorus_couchianus
ENSCLAG00000016553	RPUSD4	94	49.315	ENSXMAG00000023351	rpusd4	93	49.315	Xiphophorus_maculatus