EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCLAG00000017628 (Gene tree)
Gene ID: 102025930
Gene Symbol: PABPC4L
Alias: -
Full Name: poly(A) binding protein cytoplasmic 4 like
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Plus strand
Length: 1113 bases
Position: chrJH721888.1:8613958-8615070
Accession: 102025930
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000025540	RRM_5	PF13893.6	1.2e-13	1	3
ENSCLAP00000025540	RRM_5	PF13893.6	1.2e-13	2	3
ENSCLAP00000025540	RRM_5	PF13893.6	1.2e-13	3	3
ENSCLAP00000025540	RRM_1	PF00076.22	1.3e-83	1	4
ENSCLAP00000025540	RRM_1	PF00076.22	1.3e-83	2	4
ENSCLAP00000025540	RRM_1	PF00076.22	1.3e-83	3	4
ENSCLAP00000025540	RRM_1	PF00076.22	1.3e-83	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000025802	PABPC4L-201	1113	XM_005386713	ENSCLAP00000025540	370 (aa)	XP_005386770	-

Gene Model

Click here to download ENSCLAG00000017628's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000017628's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCLAG00000017628	PABPC4L	69	42.857	ENSCLAG00000008344	CELF4	52	42.857
ENSCLAG00000017628	PABPC4L	72	32.584	ENSCLAG00000012855	HNRNPA3	62	32.418
ENSCLAG00000017628	PABPC4L	62	39.683	ENSCLAG00000000586	CELF3	60	39.683
ENSCLAG00000017628	PABPC4L	98	30.519	ENSCLAG00000016404	ELAVL3	90	30.719
ENSCLAG00000017628	PABPC4L	98	60.606	ENSCLAG00000005298	PABPC1L	61	60.606
ENSCLAG00000017628	PABPC4L	98	61.224	ENSCLAG00000017412	-	98	61.224
ENSCLAG00000017628	PABPC4L	97	60.955	ENSCLAG00000000647	PABPC5	96	60.989
ENSCLAG00000017628	PABPC4L	66	36.486	ENSCLAG00000016087	CIRBP	54	36.486
ENSCLAG00000017628	PABPC4L	97	30.519	ENSCLAG00000005476	ELAVL4	98	30.519
ENSCLAG00000017628	PABPC4L	66	32.704	ENSCLAG00000008223	TRNAU1AP	53	31.818
ENSCLAG00000017628	PABPC4L	62	39.474	ENSCLAG00000002908	RBM3	55	38.462
ENSCLAG00000017628	PABPC4L	99	72.603	ENSCLAG00000011899	PABPC4	60	73.003
ENSCLAG00000017628	PABPC4L	98	68.852	ENSCLAG00000009676	PABPC1	56	68.852
ENSCLAG00000017628	PABPC4L	98	61.224	ENSCLAG00000017409	-	98	61.224

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000017628	PABPC4L	100	83.784	ENSG00000254535	PABPC4L	100	83.784	Homo_sapiens
ENSCLAG00000017628	PABPC4L	100	81.892	ENSANAG00000017199	PABPC4L	87	81.892	Aotus_nancymaae
ENSCLAG00000017628	PABPC4L	99	82.114	ENSBTAG00000046902	PABPC4L	99	82.114	Bos_taurus
ENSCLAG00000017628	PABPC4L	100	82.703	ENSCJAG00000045332	PABPC4L	86	82.703	Callithrix_jacchus
ENSCLAG00000017628	PABPC4L	99	70.109	ENSCAFG00020019182	-	54	70.109	Canis_lupus_dingo
ENSCLAG00000017628	PABPC4L	99	82.114	ENSCHIG00000007231	PABPC4L	99	82.114	Capra_hircus
ENSCLAG00000017628	PABPC4L	98	83.582	ENSCAPG00000000555	PABPC4L	100	83.582	Cavia_aperea
ENSCLAG00000017628	PABPC4L	100	80.811	ENSCPOG00000033167	PABPC4L	100	80.811	Cavia_porcellus
ENSCLAG00000017628	PABPC4L	100	82.432	ENSCCAG00000031681	PABPC4L	86	82.432	Cebus_capucinus
ENSCLAG00000017628	PABPC4L	100	81.892	ENSCANG00000037677	PABPC4L	100	81.892	Colobus_angolensis_palliatus
ENSCLAG00000017628	PABPC4L	100	77.027	ENSCGRG00001002070	Pabpc4l	100	77.027	Cricetulus_griseus_chok1gshd
ENSCLAG00000017628	PABPC4L	100	77.027	ENSCGRG00000020086	Pabpc4l	100	77.027	Cricetulus_griseus_crigri
ENSCLAG00000017628	PABPC4L	100	82.703	ENSDNOG00000031077	PABPC4L	95	82.703	Dasypus_novemcinctus
ENSCLAG00000017628	PABPC4L	99	81.030	ENSEASG00005007883	PABPC4L	99	81.030	Equus_asinus_asinus
ENSCLAG00000017628	PABPC4L	99	81.572	ENSECAG00000031416	PABPC4L	99	81.572	Equus_caballus
ENSCLAG00000017628	PABPC4L	99	81.572	ENSFCAG00000028270	PABPC4L	99	81.572	Felis_catus
ENSCLAG00000017628	PABPC4L	99	82.927	ENSFDAG00000019606	PABPC4L	99	82.927	Fukomys_damarensis
ENSCLAG00000017628	PABPC4L	100	83.243	ENSGGOG00000024991	PABPC4L	100	83.243	Gorilla_gorilla
ENSCLAG00000017628	PABPC4L	99	84.553	ENSHGLG00000020104	PABPC4L	99	84.553	Heterocephalus_glaber_female
ENSCLAG00000017628	PABPC4L	99	84.553	ENSHGLG00100020648	PABPC4L	99	84.553	Heterocephalus_glaber_male
ENSCLAG00000017628	PABPC4L	100	80.863	ENSSTOG00000019472	PABPC4L	99	80.863	Ictidomys_tridecemlineatus
ENSCLAG00000017628	PABPC4L	99	78.049	ENSJJAG00000004090	Pabpc4l	99	78.049	Jaculus_jaculus
ENSCLAG00000017628	PABPC4L	100	77.838	ENSMAUG00000016313	Pabpc4l	100	77.838	Mesocricetus_auratus
ENSCLAG00000017628	PABPC4L	100	84.054	ENSMICG00000029683	PABPC4L	100	84.054	Microcebus_murinus
ENSCLAG00000017628	PABPC4L	100	77.838	ENSMOCG00000007551	Pabpc4l	100	77.838	Microtus_ochrogaster
ENSCLAG00000017628	PABPC4L	99	79.070	MGP_CAROLIEiJ_G0024968	Pabpc4l	100	79.070	Mus_caroli
ENSCLAG00000017628	PABPC4L	100	76.757	ENSMUSG00000090919	Pabpc4l	100	77.326	Mus_musculus
ENSCLAG00000017628	PABPC4L	100	76.216	MGP_PahariEiJ_G0026409	Pabpc4l	100	76.744	Mus_pahari
ENSCLAG00000017628	PABPC4L	100	76.216	MGP_SPRETEiJ_G0025903	Pabpc4l	94	82.979	Mus_spretus
ENSCLAG00000017628	PABPC4L	99	73.984	ENSMLUG00000008254	PABPC4L	99	73.984	Myotis_lucifugus
ENSCLAG00000017628	PABPC4L	100	81.351	ENSNGAG00000001502	Pabpc4l	100	81.351	Nannospalax_galili
ENSCLAG00000017628	PABPC4L	100	83.514	ENSNLEG00000019300	PABPC4L	100	83.514	Nomascus_leucogenys
ENSCLAG00000017628	PABPC4L	100	78.108	ENSOGAG00000026166	PABPC4L	100	78.108	Otolemur_garnettii
ENSCLAG00000017628	PABPC4L	99	83.901	ENSPPAG00000043745	PABPC4L	93	83.901	Pan_paniscus
ENSCLAG00000017628	PABPC4L	99	81.301	ENSPPRG00000018628	PABPC4L	99	81.301	Panthera_pardus
ENSCLAG00000017628	PABPC4L	99	81.572	ENSPTIG00000010106	PABPC4L	99	81.572	Panthera_tigris_altaica
ENSCLAG00000017628	PABPC4L	99	83.901	ENSPTRG00000045513	-	77	83.901	Pan_troglodytes
ENSCLAG00000017628	PABPC4L	100	77.568	ENSPEMG00000012565	Pabpc4l	100	77.568	Peromyscus_maniculatus_bairdii
ENSCLAG00000017628	PABPC4L	100	84.054	ENSPCOG00000025578	PABPC4L	100	84.054	Propithecus_coquereli
ENSCLAG00000017628	PABPC4L	100	75.946	ENSRNOG00000029749	Pabpc4l	100	75.946	Rattus_norvegicus
ENSCLAG00000017628	PABPC4L	100	81.622	ENSRBIG00000030229	PABPC4L	100	81.622	Rhinopithecus_bieti
ENSCLAG00000017628	PABPC4L	100	81.351	ENSRROG00000020367	PABPC4L	100	81.351	Rhinopithecus_roxellana
ENSCLAG00000017628	PABPC4L	100	82.162	ENSSBOG00000016382	PABPC4L	100	82.162	Saimiri_boliviensis_boliviensis
ENSCLAG00000017628	PABPC4L	99	75.881	ENSSSCG00000009067	PABPC4L	99	75.881	Sus_scrofa
ENSCLAG00000017628	PABPC4L	99	82.385	ENSUAMG00000001289	PABPC4L	99	82.385	Ursus_americanus
ENSCLAG00000017628	PABPC4L	99	82.385	ENSUMAG00000014887	PABPC4L	99	82.385	Ursus_maritimus
ENSCLAG00000017628	PABPC4L	89	72.892	ENSVVUG00000011060	-	76	72.892	Vulpes_vulpes