EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCLAG00000017909 (Gene tree)
Gene ID: 102010600
Gene Symbol: PCBP1
Alias: HNRPE1|HNRPX|hnRNP-E1|hnRNP-X
Full Name: poly(rC) binding protein 1
Gene Type: protein_coding
Species: Chinchilla_lanigera
Status: putative
Strand: Minus strand
Length: 1071 bases
Position: chrJH721884.1:15046011-15047081
Accession: 102010600
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCLAP00000025783	KH_1	PF00013.29	1.4e-51	1	3
ENSCLAP00000025783	KH_1	PF00013.29	1.4e-51	2	3
ENSCLAP00000025783	KH_1	PF00013.29	1.4e-51	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCLAT00000026083	PCBP1-201	1071	XM_005385632	ENSCLAP00000025783	356 (aa)	XP_005385689	UPI00038ECC13

Gene Model

Click here to download ENSCLAG00000017909's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCLAG00000017909's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCLAG00000017909	PCBP1	99	66.027	ENSCLAG00000006667	PCBP3	91	66.027
ENSCLAG00000017909	PCBP1	69	40.541	ENSCLAG00000008948	NOVA1	63	40.541
ENSCLAG00000017909	PCBP1	98	34.783	ENSCLAG00000014808	IGF2BP2	74	34.783
ENSCLAG00000017909	PCBP1	91	69.939	ENSCLAG00000006163	-	97	69.939
ENSCLAG00000017909	PCBP1	98	52.691	ENSCLAG00000008356	PCBP4	77	52.691
ENSCLAG00000017909	PCBP1	51	30.952	ENSCLAG00000009005	FUBP3	76	30.952
ENSCLAG00000017909	PCBP1	100	76.567	ENSCLAG00000012230	PCBP2	100	76.567
ENSCLAG00000017909	PCBP1	69	34.667	ENSCLAG00000007309	KHSRP	59	34.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCLAG00000017909	PCBP1	100	99.438	ENSG00000169564	PCBP1	100	99.438	Homo_sapiens
ENSCLAG00000017909	PCBP1	100	96.629	ENSAMEG00000016094	PCBP1	100	96.629	Ailuropoda_melanoleuca
ENSCLAG00000017909	PCBP1	89	87.342	ENSANAG00000027108	-	100	87.342	Aotus_nancymaae
ENSCLAG00000017909	PCBP1	79	94.346	ENSANAG00000019364	-	100	94.346	Aotus_nancymaae
ENSCLAG00000017909	PCBP1	79	94.700	ENSANAG00000031745	-	100	94.700	Aotus_nancymaae
ENSCLAG00000017909	PCBP1	79	91.166	ENSANAG00000022494	-	100	91.166	Aotus_nancymaae
ENSCLAG00000017909	PCBP1	100	87.640	ENSANAG00000026077	-	100	87.640	Aotus_nancymaae
ENSCLAG00000017909	PCBP1	100	88.483	ENSANAG00000023938	-	100	88.483	Aotus_nancymaae
ENSCLAG00000017909	PCBP1	97	95.665	ENSANAG00000026989	-	99	95.665	Aotus_nancymaae
ENSCLAG00000017909	PCBP1	100	85.393	ENSANAG00000033377	-	100	85.393	Aotus_nancymaae
ENSCLAG00000017909	PCBP1	91	99.383	ENSBTAG00000008985	PCBP1	99	99.383	Bos_taurus
ENSCLAG00000017909	PCBP1	100	94.101	ENSCJAG00000038388	-	95	94.101	Callithrix_jacchus
ENSCLAG00000017909	PCBP1	100	99.719	ENSCAFG00000003326	PCBP1	100	99.719	Canis_familiaris
ENSCLAG00000017909	PCBP1	100	99.438	ENSCHIG00000007923	PCBP1	100	99.438	Capra_hircus
ENSCLAG00000017909	PCBP1	100	98.876	ENSTSYG00000027848	PCBP1	100	98.876	Carlito_syrichta
ENSCLAG00000017909	PCBP1	100	99.438	ENSCPOG00000013511	PCBP1	100	99.438	Cavia_porcellus
ENSCLAG00000017909	PCBP1	100	90.730	ENSCCAG00000029186	-	98	90.730	Cebus_capucinus
ENSCLAG00000017909	PCBP1	100	99.438	ENSCCAG00000019842	-	100	99.438	Cebus_capucinus
ENSCLAG00000017909	PCBP1	100	99.438	ENSCATG00000015029	PCBP1	100	99.438	Cercocebus_atys
ENSCLAG00000017909	PCBP1	100	99.438	ENSCSAG00000019441	PCBP1	100	99.438	Chlorocebus_sabaeus
ENSCLAG00000017909	PCBP1	100	89.326	ENSCANG00000032470	-	94	89.326	Colobus_angolensis_palliatus
ENSCLAG00000017909	PCBP1	100	99.438	ENSCANG00000018039	-	100	99.438	Colobus_angolensis_palliatus
ENSCLAG00000017909	PCBP1	72	83.922	ENSCANG00000033810	-	87	83.922	Colobus_angolensis_palliatus
ENSCLAG00000017909	PCBP1	100	99.438	ENSCGRG00001015078	Pcbp1	100	99.438	Cricetulus_griseus_chok1gshd
ENSCLAG00000017909	PCBP1	100	99.438	ENSCGRG00000018899	Pcbp1	100	99.438	Cricetulus_griseus_crigri
ENSCLAG00000017909	PCBP1	80	98.596	ENSDNOG00000036372	PCBP1	99	98.596	Dasypus_novemcinctus
ENSCLAG00000017909	PCBP1	100	99.438	ENSDORG00000008216	Pcbp1	100	99.438	Dipodomys_ordii
ENSCLAG00000017909	PCBP1	100	99.438	ENSFCAG00000022238	PCBP1	100	99.438	Felis_catus
ENSCLAG00000017909	PCBP1	100	99.157	ENSFDAG00000019637	PCBP1	100	99.157	Fukomys_damarensis
ENSCLAG00000017909	PCBP1	100	99.438	ENSGGOG00000028130	PCBP1	100	99.438	Gorilla_gorilla
ENSCLAG00000017909	PCBP1	100	97.191	ENSHGLG00000020243	-	100	97.191	Heterocephalus_glaber_female
ENSCLAG00000017909	PCBP1	100	99.157	ENSHGLG00000020345	Pcbp1	100	99.157	Heterocephalus_glaber_female
ENSCLAG00000017909	PCBP1	100	99.157	ENSHGLG00100019761	Pcbp1	100	99.157	Heterocephalus_glaber_male
ENSCLAG00000017909	PCBP1	100	98.876	ENSHGLG00100019620	-	100	98.876	Heterocephalus_glaber_male
ENSCLAG00000017909	PCBP1	100	99.438	ENSSTOG00000026002	PCBP1	100	99.438	Ictidomys_tridecemlineatus
ENSCLAG00000017909	PCBP1	100	99.438	ENSJJAG00000000737	Pcbp1	100	99.438	Jaculus_jaculus
ENSCLAG00000017909	PCBP1	95	88.131	ENSMFAG00000003400	PCBP1	100	88.131	Macaca_fascicularis
ENSCLAG00000017909	PCBP1	100	99.438	ENSMMUG00000038295	PCBP1	100	99.438	Macaca_mulatta
ENSCLAG00000017909	PCBP1	100	99.438	ENSMNEG00000002934	PCBP1	100	99.438	Macaca_nemestrina
ENSCLAG00000017909	PCBP1	100	99.438	ENSMLEG00000027389	PCBP1	100	99.438	Mandrillus_leucophaeus
ENSCLAG00000017909	PCBP1	100	99.157	ENSMAUG00000009843	Pcbp1	100	99.157	Mesocricetus_auratus
ENSCLAG00000017909	PCBP1	100	99.438	ENSMICG00000038221	PCBP1	100	99.438	Microcebus_murinus
ENSCLAG00000017909	PCBP1	100	99.438	ENSMOCG00000008102	Pcbp1	100	99.438	Microtus_ochrogaster
ENSCLAG00000017909	PCBP1	100	99.438	MGP_CAROLIEiJ_G0028598	Pcbp1	100	99.438	Mus_caroli
ENSCLAG00000017909	PCBP1	100	99.438	ENSMUSG00000051695	Pcbp1	100	99.438	Mus_musculus
ENSCLAG00000017909	PCBP1	100	99.438	MGP_PahariEiJ_G0022335	Pcbp1	100	99.438	Mus_pahari
ENSCLAG00000017909	PCBP1	100	99.438	MGP_SPRETEiJ_G0029609	Pcbp1	100	99.438	Mus_spretus
ENSCLAG00000017909	PCBP1	100	96.629	ENSMPUG00000007175	PCBP1	100	96.629	Mustela_putorius_furo
ENSCLAG00000017909	PCBP1	100	99.438	ENSMLUG00000014173	PCBP1	100	99.438	Myotis_lucifugus
ENSCLAG00000017909	PCBP1	100	99.438	ENSNGAG00000014909	-	100	99.438	Nannospalax_galili
ENSCLAG00000017909	PCBP1	100	99.438	ENSNGAG00000011957	-	100	99.438	Nannospalax_galili
ENSCLAG00000017909	PCBP1	100	99.438	ENSNLEG00000018722	PCBP1	100	99.438	Nomascus_leucogenys
ENSCLAG00000017909	PCBP1	100	82.865	ENSODEG00000000263	PCBP1	100	82.865	Octodon_degus
ENSCLAG00000017909	PCBP1	100	99.438	ENSOCUG00000003634	PCBP1	100	99.438	Oryctolagus_cuniculus
ENSCLAG00000017909	PCBP1	100	96.629	ENSOGAG00000028946	PCBP1	100	96.629	Otolemur_garnettii
ENSCLAG00000017909	PCBP1	100	99.438	ENSOARG00000019516	PCBP1	100	99.438	Ovis_aries
ENSCLAG00000017909	PCBP1	100	97.472	ENSPPAG00000036116	PCBP1	99	98.039	Pan_paniscus
ENSCLAG00000017909	PCBP1	100	99.438	ENSPPRG00000020533	PCBP1	100	99.438	Panthera_pardus
ENSCLAG00000017909	PCBP1	100	99.438	ENSPTIG00000007318	PCBP1	100	99.438	Panthera_tigris_altaica
ENSCLAG00000017909	PCBP1	100	99.438	ENSPTRG00000012025	PCBP1	100	99.438	Pan_troglodytes
ENSCLAG00000017909	PCBP1	100	99.438	ENSPANG00000011314	PCBP1	100	99.438	Papio_anubis
ENSCLAG00000017909	PCBP1	100	99.438	ENSPPYG00000012328	PCBP1	100	99.438	Pongo_abelii
ENSCLAG00000017909	PCBP1	100	99.438	ENSPCOG00000026934	PCBP1	100	99.438	Propithecus_coquereli
ENSCLAG00000017909	PCBP1	93	98.193	ENSRROG00000012514	-	100	98.193	Rhinopithecus_roxellana
ENSCLAG00000017909	PCBP1	100	98.596	ENSRROG00000009684	-	95	98.596	Rhinopithecus_roxellana
ENSCLAG00000017909	PCBP1	100	83.146	ENSSBOG00000035309	-	94	83.146	Saimiri_boliviensis_boliviensis
ENSCLAG00000017909	PCBP1	100	99.157	ENSSSCG00000027224	PCBP1	100	99.157	Sus_scrofa
ENSCLAG00000017909	PCBP1	51	98.889	ENSTBEG00000015706	-	51	98.889	Tupaia_belangeri
ENSCLAG00000017909	PCBP1	91	99.690	ENSVVUG00000028033	PCBP1	99	99.690	Vulpes_vulpes