EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPBG00000000216 (Gene tree)
Gene ID: 101942604
Gene Symbol: PTCD2
Alias: FLJ12598
Full Name: pentatricopeptide repeat domain 2
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Plus strand
Length: 60866 bases
Position: chrKK082917.1:9538913-9599778
Accession: 25734
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000000241	PPR	PF01535.20	1.1e-06	1	1
ENSCPBP00000000220	PPR	PF01535.20	2.7e-06	1	1
ENSCPBP00000000229	PPR	PF01535.20	2.9e-06	1	1
ENSCPBP00000000229	MRP-S27	PF10037.9	1.6e-07	1	1
ENSCPBP00000000241	MRP-S27	PF10037.9	7.8e-07	1	1
ENSCPBP00000000220	MRP-S27	PF10037.9	9.9e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000000294	PTCD2-201	1104	XM_005288220	ENSCPBP00000000220	367 (aa)	XP_005288277	UPI00046C1A5F
ENSCPBT00000000316	PTCD2-203	1059	-	ENSCPBP00000000241	352 (aa)	-	-
ENSCPBT00000000303	PTCD2-202	1173	-	ENSCPBP00000000229	390 (aa)	XP_005288275	UPI00046C138C

Gene Model

Click here to download ENSCPBG00000000216's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000000216's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000000216	PTCD2	100	54.337	ENSG00000049883	PTCD2	100	54.337	Homo_sapiens
ENSCPBG00000000216	PTCD2	91	48.169	ENSAPOG00000020682	ptcd2	93	48.169	Acanthochromis_polyacanthus
ENSCPBG00000000216	PTCD2	99	55.013	ENSAMEG00000007194	PTCD2	99	55.013	Ailuropoda_melanoleuca
ENSCPBG00000000216	PTCD2	88	43.840	ENSACIG00000002053	ptcd2	100	43.840	Amphilophus_citrinellus
ENSCPBG00000000216	PTCD2	91	47.887	ENSAOCG00000006616	ptcd2	91	47.887	Amphiprion_ocellaris
ENSCPBG00000000216	PTCD2	91	48.169	ENSAPEG00000022926	ptcd2	91	48.169	Amphiprion_percula
ENSCPBG00000000216	PTCD2	100	64.706	ENSACAG00000009747	PTCD2	100	64.706	Anolis_carolinensis
ENSCPBG00000000216	PTCD2	100	55.385	ENSANAG00000029353	PTCD2	100	55.385	Aotus_nancymaae
ENSCPBG00000000216	PTCD2	89	46.110	ENSACLG00000027742	ptcd2	89	46.110	Astatotilapia_calliptera
ENSCPBG00000000216	PTCD2	87	42.188	ENSAMXG00000029404	ptcd2	87	43.425	Astyanax_mexicanus
ENSCPBG00000000216	PTCD2	98	54.308	ENSBTAG00000014675	PTCD2	99	54.308	Bos_taurus
ENSCPBG00000000216	PTCD2	100	54.987	ENSCJAG00000016364	PTCD2	100	54.987	Callithrix_jacchus
ENSCPBG00000000216	PTCD2	99	56.410	ENSCAFG00000007982	PTCD2	91	56.410	Canis_familiaris
ENSCPBG00000000216	PTCD2	89	59.249	ENSCAFG00020019147	PTCD2	97	59.249	Canis_lupus_dingo
ENSCPBG00000000216	PTCD2	98	53.786	ENSCHIG00000017118	PTCD2	99	53.786	Capra_hircus
ENSCPBG00000000216	PTCD2	98	51.436	ENSCPOG00000040168	PTCD2	100	51.436	Cavia_porcellus
ENSCPBG00000000216	PTCD2	86	55.556	ENSCCAG00000021996	-	91	57.576	Cebus_capucinus
ENSCPBG00000000216	PTCD2	100	54.872	ENSCCAG00000029389	-	100	54.872	Cebus_capucinus
ENSCPBG00000000216	PTCD2	98	54.805	ENSCATG00000019069	PTCD2	100	54.805	Cercocebus_atys
ENSCPBG00000000216	PTCD2	92	54.039	ENSCLAG00000000072	PTCD2	94	54.039	Chinchilla_lanigera
ENSCPBG00000000216	PTCD2	90	58.286	ENSCSAG00000015623	PTCD2	100	55.091	Chlorocebus_sabaeus
ENSCPBG00000000216	PTCD2	78	62.941	ENSCHOG00000010634	PTCD2	79	62.941	Choloepus_hoffmanni
ENSCPBG00000000216	PTCD2	98	54.805	ENSCANG00000035636	PTCD2	99	54.805	Colobus_angolensis_palliatus
ENSCPBG00000000216	PTCD2	91	56.215	ENSCGRG00001015289	Ptcd2	78	56.215	Cricetulus_griseus_chok1gshd
ENSCPBG00000000216	PTCD2	91	56.215	ENSCGRG00000006193	Ptcd2	78	56.215	Cricetulus_griseus_crigri
ENSCPBG00000000216	PTCD2	94	46.322	ENSCVAG00000001285	ptcd2	93	46.322	Cyprinodon_variegatus
ENSCPBG00000000216	PTCD2	95	46.917	ENSDARG00000035391	ptcd2	97	46.917	Danio_rerio
ENSCPBG00000000216	PTCD2	98	54.188	ENSDNOG00000008719	PTCD2	99	54.188	Dasypus_novemcinctus
ENSCPBG00000000216	PTCD2	96	54.813	ENSDORG00000004921	Ptcd2	97	54.813	Dipodomys_ordii
ENSCPBG00000000216	PTCD2	99	49.742	ENSETEG00000016542	PTCD2	99	49.742	Echinops_telfairi
ENSCPBG00000000216	PTCD2	94	55.858	ENSEASG00005018038	PTCD2	96	55.858	Equus_asinus_asinus
ENSCPBG00000000216	PTCD2	94	55.858	ENSECAG00000007022	PTCD2	95	55.858	Equus_caballus
ENSCPBG00000000216	PTCD2	98	52.835	ENSEEUG00000014031	PTCD2	99	52.835	Erinaceus_europaeus
ENSCPBG00000000216	PTCD2	98	46.753	ENSELUG00000003584	ptcd2	100	46.753	Esox_lucius
ENSCPBG00000000216	PTCD2	99	53.077	ENSFCAG00000045432	PTCD2	84	53.077	Felis_catus
ENSCPBG00000000216	PTCD2	84	57.187	ENSFALG00000010299	PTCD2	99	57.187	Ficedula_albicollis
ENSCPBG00000000216	PTCD2	92	54.875	ENSFDAG00000018461	PTCD2	94	54.875	Fukomys_damarensis
ENSCPBG00000000216	PTCD2	89	48.857	ENSGMOG00000003637	ptcd2	91	48.857	Gadus_morhua
ENSCPBG00000000216	PTCD2	91	56.742	ENSGALG00000038260	PTCD2	100	54.569	Gallus_gallus
ENSCPBG00000000216	PTCD2	100	84.872	ENSGAGG00000021952	PTCD2	100	84.872	Gopherus_agassizii
ENSCPBG00000000216	PTCD2	100	54.337	ENSGGOG00000010695	PTCD2	100	54.337	Gorilla_gorilla
ENSCPBG00000000216	PTCD2	89	46.110	ENSHBUG00000009191	ptcd2	89	46.110	Haplochromis_burtoni
ENSCPBG00000000216	PTCD2	92	55.556	ENSHGLG00000001234	PTCD2	94	55.556	Heterocephalus_glaber_female
ENSCPBG00000000216	PTCD2	92	55.556	ENSHGLG00100015419	PTCD2	94	55.556	Heterocephalus_glaber_male
ENSCPBG00000000216	PTCD2	95	46.631	ENSHCOG00000001703	ptcd2	96	46.631	Hippocampus_comes
ENSCPBG00000000216	PTCD2	88	45.322	ENSIPUG00000006080	ptcd2	92	45.634	Ictalurus_punctatus
ENSCPBG00000000216	PTCD2	95	55.496	ENSSTOG00000006596	PTCD2	97	55.496	Ictidomys_tridecemlineatus
ENSCPBG00000000216	PTCD2	93	56.233	ENSJJAG00000024388	Ptcd2	94	56.233	Jaculus_jaculus
ENSCPBG00000000216	PTCD2	90	42.493	ENSKMAG00000009329	ptcd2	92	42.493	Kryptolebias_marmoratus
ENSCPBG00000000216	PTCD2	89	48.555	ENSLBEG00000024871	ptcd2	88	48.555	Labrus_bergylta
ENSCPBG00000000216	PTCD2	94	56.098	ENSLOCG00000011122	ptcd2	96	56.098	Lepisosteus_oculatus
ENSCPBG00000000216	PTCD2	75	60.870	ENSLAFG00000004115	PTCD2	99	56.634	Loxodonta_africana
ENSCPBG00000000216	PTCD2	99	54.522	ENSMFAG00000031516	PTCD2	99	54.522	Macaca_fascicularis
ENSCPBG00000000216	PTCD2	98	55.325	ENSMNEG00000007537	PTCD2	100	55.325	Macaca_nemestrina
ENSCPBG00000000216	PTCD2	99	54.780	ENSMLEG00000031093	PTCD2	99	54.780	Mandrillus_leucophaeus
ENSCPBG00000000216	PTCD2	95	48.387	ENSMAMG00000018529	ptcd2	97	48.387	Mastacembelus_armatus
ENSCPBG00000000216	PTCD2	89	46.110	ENSMZEG00005003625	ptcd2	89	46.110	Maylandia_zebra
ENSCPBG00000000216	PTCD2	89	57.061	ENSMGAG00000005033	PTCD2	99	57.061	Meleagris_gallopavo
ENSCPBG00000000216	PTCD2	91	50.779	ENSMAUG00000020253	Ptcd2	93	50.779	Mesocricetus_auratus
ENSCPBG00000000216	PTCD2	98	53.927	ENSMICG00000004535	PTCD2	98	53.927	Microcebus_murinus
ENSCPBG00000000216	PTCD2	92	55.153	ENSMOCG00000019985	Ptcd2	94	55.153	Microtus_ochrogaster
ENSCPBG00000000216	PTCD2	98	51.958	ENSMODG00000001695	PTCD2	99	51.958	Monodelphis_domestica
ENSCPBG00000000216	PTCD2	89	49.857	ENSMALG00000022372	ptcd2	91	49.857	Monopterus_albus
ENSCPBG00000000216	PTCD2	95	52.957	MGP_CAROLIEiJ_G0018829	Ptcd2	98	52.957	Mus_caroli
ENSCPBG00000000216	PTCD2	95	52.957	ENSMUSG00000021650	Ptcd2	98	52.957	Mus_musculus
ENSCPBG00000000216	PTCD2	92	55.710	MGP_PahariEiJ_G0015904	Ptcd2	94	55.710	Mus_pahari
ENSCPBG00000000216	PTCD2	95	53.226	MGP_SPRETEiJ_G0019711	Ptcd2	98	53.226	Mus_spretus
ENSCPBG00000000216	PTCD2	96	56.032	ENSMPUG00000014401	PTCD2	97	56.032	Mustela_putorius_furo
ENSCPBG00000000216	PTCD2	94	52.023	ENSMLUG00000007374	PTCD2	93	54.444	Myotis_lucifugus
ENSCPBG00000000216	PTCD2	92	53.203	ENSNGAG00000005027	Ptcd2	94	53.203	Nannospalax_galili
ENSCPBG00000000216	PTCD2	89	46.398	ENSNBRG00000008174	ptcd2	91	46.398	Neolamprologus_brichardi
ENSCPBG00000000216	PTCD2	85	45.455	ENSNBRG00000000092	-	100	45.455	Neolamprologus_brichardi
ENSCPBG00000000216	PTCD2	100	54.337	ENSNLEG00000004516	PTCD2	100	54.337	Nomascus_leucogenys
ENSCPBG00000000216	PTCD2	64	66.447	ENSMEUG00000014012	-	82	48.726	Notamacropus_eugenii
ENSCPBG00000000216	PTCD2	99	53.846	ENSOPRG00000007290	PTCD2	100	53.846	Ochotona_princeps
ENSCPBG00000000216	PTCD2	92	55.866	ENSODEG00000016417	PTCD2	93	55.866	Octodon_degus
ENSCPBG00000000216	PTCD2	76	48.921	ENSONIG00000011269	ptcd2	82	48.921	Oreochromis_niloticus
ENSCPBG00000000216	PTCD2	92	56.425	ENSOCUG00000007970	PTCD2	99	54.068	Oryctolagus_cuniculus
ENSCPBG00000000216	PTCD2	91	43.539	ENSORLG00000003851	ptcd2	91	43.539	Oryzias_latipes
ENSCPBG00000000216	PTCD2	91	42.978	ENSORLG00020009823	ptcd2	93	42.978	Oryzias_latipes_hni
ENSCPBG00000000216	PTCD2	91	43.343	ENSORLG00015016777	ptcd2	99	43.343	Oryzias_latipes_hsok
ENSCPBG00000000216	PTCD2	100	43.257	ENSOMEG00000012396	ptcd2	95	43.257	Oryzias_melastigma
ENSCPBG00000000216	PTCD2	99	54.145	ENSOGAG00000008390	PTCD2	99	54.145	Otolemur_garnettii
ENSCPBG00000000216	PTCD2	98	53.786	ENSOARG00000005087	PTCD2	98	53.786	Ovis_aries
ENSCPBG00000000216	PTCD2	100	54.337	ENSPPAG00000028480	PTCD2	100	54.337	Pan_paniscus
ENSCPBG00000000216	PTCD2	100	54.082	ENSPTRG00000016968	PTCD2	100	54.082	Pan_troglodytes
ENSCPBG00000000216	PTCD2	88	57.391	ENSPANG00000006611	PTCD2	89	57.391	Papio_anubis
ENSCPBG00000000216	PTCD2	98	47.532	ENSPKIG00000019896	ptcd2	100	47.532	Paramormyrops_kingsleyae
ENSCPBG00000000216	PTCD2	87	80.878	ENSPSIG00000014559	PTCD2	99	80.878	Pelodiscus_sinensis
ENSCPBG00000000216	PTCD2	92	56.510	ENSPEMG00000000884	Ptcd2	94	56.510	Peromyscus_maniculatus_bairdii
ENSCPBG00000000216	PTCD2	98	53.525	ENSPCIG00000029047	PTCD2	99	53.525	Phascolarctos_cinereus
ENSCPBG00000000216	PTCD2	85	45.714	ENSPLAG00000010456	ptcd2	90	45.845	Poecilia_latipinna
ENSCPBG00000000216	PTCD2	89	46.705	ENSPREG00000021797	ptcd2	88	46.705	Poecilia_reticulata
ENSCPBG00000000216	PTCD2	99	47.287	ENSPPYG00000015543	PTCD2	99	47.287	Pongo_abelii
ENSCPBG00000000216	PTCD2	85	48.408	ENSPCAG00000006806	PTCD2	99	48.408	Procavia_capensis
ENSCPBG00000000216	PTCD2	92	54.696	ENSPVAG00000010935	PTCD2	93	54.696	Pteropus_vampyrus
ENSCPBG00000000216	PTCD2	89	45.821	ENSPNYG00000003122	ptcd2	89	45.821	Pundamilia_nyererei
ENSCPBG00000000216	PTCD2	94	48.780	ENSPNAG00000021490	ptcd2	96	48.780	Pygocentrus_nattereri
ENSCPBG00000000216	PTCD2	92	55.710	ENSRNOG00000028403	Ptcd2	94	55.710	Rattus_norvegicus
ENSCPBG00000000216	PTCD2	99	50.904	ENSRBIG00000032929	PTCD2	99	50.904	Rhinopithecus_bieti
ENSCPBG00000000216	PTCD2	98	55.065	ENSRROG00000000080	PTCD2	100	55.065	Rhinopithecus_roxellana
ENSCPBG00000000216	PTCD2	98	54.427	ENSSBOG00000018911	PTCD2	100	54.427	Saimiri_boliviensis_boliviensis
ENSCPBG00000000216	PTCD2	98	52.219	ENSSHAG00000003833	PTCD2	99	52.219	Sarcophilus_harrisii
ENSCPBG00000000216	PTCD2	91	50.423	ENSSFOG00015015415	ptcd2	92	50.423	Scleropages_formosus
ENSCPBG00000000216	PTCD2	90	46.154	ENSSMAG00000010350	ptcd2	92	45.682	Scophthalmus_maximus
ENSCPBG00000000216	PTCD2	100	47.436	ENSSDUG00000008142	ptcd2	97	47.436	Seriola_dumerili
ENSCPBG00000000216	PTCD2	91	50.141	ENSSLDG00000015284	ptcd2	93	50.141	Seriola_lalandi_dorsalis
ENSCPBG00000000216	PTCD2	84	49.355	ENSSARG00000004983	PTCD2	99	49.355	Sorex_araneus
ENSCPBG00000000216	PTCD2	98	58.747	ENSSPUG00000000176	PTCD2	96	58.747	Sphenodon_punctatus
ENSCPBG00000000216	PTCD2	91	47.324	ENSSPAG00000008591	ptcd2	91	47.324	Stegastes_partitus
ENSCPBG00000000216	PTCD2	99	54.522	ENSSSCG00000016975	PTCD2	97	49.870	Sus_scrofa
ENSCPBG00000000216	PTCD2	88	56.812	ENSTGUG00000005705	PTCD2	99	56.812	Taeniopygia_guttata
ENSCPBG00000000216	PTCD2	99	51.671	ENSTBEG00000016559	PTCD2	99	51.671	Tupaia_belangeri
ENSCPBG00000000216	PTCD2	99	54.499	ENSTTRG00000011851	PTCD2	99	54.499	Tursiops_truncatus
ENSCPBG00000000216	PTCD2	99	54.756	ENSUAMG00000007583	PTCD2	91	54.756	Ursus_americanus
ENSCPBG00000000216	PTCD2	98	55.065	ENSUMAG00000007666	PTCD2	100	55.065	Ursus_maritimus
ENSCPBG00000000216	PTCD2	99	51.804	ENSVPAG00000009597	PTCD2	99	51.804	Vicugna_pacos
ENSCPBG00000000216	PTCD2	90	58.857	ENSVVUG00000007299	-	99	56.397	Vulpes_vulpes
ENSCPBG00000000216	PTCD2	98	51.562	ENSXETG00000031652	PTCD2	100	51.562	Xenopus_tropicalis
ENSCPBG00000000216	PTCD2	85	46.349	ENSXMAG00000005940	ptcd2	82	46.991	Xiphophorus_maculatus