EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSCPBG00000001038 (Gene tree)
Gene ID
101948320
Gene Symbol
PABPC4
Alias
APP-1|iPABP
Full Name
poly(A) binding protein cytoplasmic 4
Gene Type
protein_coding
Species
Chrysemys_picta_bellii
Status
putative
Strand
Plus strand
Length
19133 bases
Position
chrKK082979.1:3601745-3620877
Accession
8557
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCPBP00000001276PABPPF00658.186e-3211
ENSCPBP00000001276RRM_5PF13893.61.9e-0912
ENSCPBP00000001276RRM_5PF13893.61.9e-0922
ENSCPBP00000001276RRM_1PF00076.223.4e-9214
ENSCPBP00000001276RRM_1PF00076.223.4e-9224
ENSCPBP00000001276RRM_1PF00076.223.4e-9234
ENSCPBP00000001276RRM_1PF00076.223.4e-9244
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCPBT00000001580PABPC4-2012257XM_005302119ENSCPBP00000001276630 (aa)XP_005302175UPI0003890141
Gene Model
Click here to download ENSCPBG00000001038's gene model file
Pathways
Pathway IDPathway NameSource
cpic03013RNA transportKEGG
cpic03015mRNA surveillance pathwayKEGG
cpic03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000001038's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSCPBG00000001038PABPC45240.217ENSCPBG00000010903CELF56540.217
ENSCPBG00000001038PABPC47079.730ENSCPBG00000017755-9979.730
ENSCPBG00000001038PABPC45833.553ENSCPBG00000017097ELAVL18333.553
ENSCPBG00000001038PABPC46033.613ENSCPBG00000023982ELAVL39733.613
ENSCPBG00000001038PABPC45730.220ENSCPBG00000001103TIAL18931.538
ENSCPBG00000001038PABPC45837.500ENSCPBG00000027840CELF25538.372
ENSCPBG00000001038PABPC45836.145ENSCPBG00000007841ELAVL28936.145
ENSCPBG00000001038PABPC45741.530ENSCPBG00000008041SF3B48041.530
ENSCPBG00000001038PABPC45934.940ENSCPBG00000010017ELAVL49034.940
ENSCPBG00000001038PABPC49979.556ENSCPBG00000005782PABPC19879.715
ENSCPBG00000001038PABPC45288.636ENSCPBG00000007810-8188.636
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCPBG00000001038PABPC410091.746ENSG00000090621PABPC410098.450Homo_sapiens
ENSCPBG00000001038PABPC49986.328ENSAPOG00000001161pabpc49986.299Acanthochromis_polyacanthus
ENSCPBG00000001038PABPC49953.215ENSAMEG00000015083-9953.215Ailuropoda_melanoleuca
ENSCPBG00000001038PABPC410087.709ENSAMEG00000011535-9987.709Ailuropoda_melanoleuca
ENSCPBG00000001038PABPC410086.299ENSACIG00000023343pabpc49986.929Amphilophus_citrinellus
ENSCPBG00000001038PABPC49986.645ENSAOCG00000021529pabpc49986.614Amphiprion_ocellaris
ENSCPBG00000001038PABPC49986.645ENSAPEG00000019196pabpc49986.614Amphiprion_percula
ENSCPBG00000001038PABPC49986.032ENSATEG00000007402pabpc49986.321Anabas_testudineus
ENSCPBG00000001038PABPC410097.937ENSAPLG00000009729-10097.937Anas_platyrhynchos
ENSCPBG00000001038PABPC49995.170ENSACAG00000002544PABPC410095.170Anolis_carolinensis
ENSCPBG00000001038PABPC410091.746ENSANAG00000025079PABPC49991.746Aotus_nancymaae
ENSCPBG00000001038PABPC410085.827ENSACLG00000019558pabpc49986.457Astatotilapia_calliptera
ENSCPBG00000001038PABPC410081.388ENSAMXG00000018779pabpc49982.019Astyanax_mexicanus
ENSCPBG00000001038PABPC410088.043ENSBTAG00000017125PABPC49988.665Bos_taurus
ENSCPBG00000001038PABPC45785.030ENSBTAG00000048536-9385.030Bos_taurus
ENSCPBG00000001038PABPC47882.787ENSCJAG00000045953-9382.787Callithrix_jacchus
ENSCPBG00000001038PABPC410091.587ENSCJAG00000002512-9991.587Callithrix_jacchus
ENSCPBG00000001038PABPC410091.905ENSCAFG00000003081PABPC49991.905Canis_familiaris
ENSCPBG00000001038PABPC49692.371ENSCAFG00020004161PABPC49987.860Canis_lupus_dingo
ENSCPBG00000001038PABPC410071.272ENSCHIG00000023385-9971.272Capra_hircus
ENSCPBG00000001038PABPC410087.860ENSCHIG00000019398-9987.860Capra_hircus
ENSCPBG00000001038PABPC410091.746ENSTSYG00000006532PABPC49991.746Carlito_syrichta
ENSCPBG00000001038PABPC49991.547ENSCAPG00000015984PABPC49991.547Cavia_aperea
ENSCPBG00000001038PABPC410091.746ENSCPOG00000009552PABPC49991.746Cavia_porcellus
ENSCPBG00000001038PABPC410091.587ENSCCAG00000037306PABPC49991.587Cebus_capucinus
ENSCPBG00000001038PABPC410091.746ENSCATG00000042164PABPC49991.746Cercocebus_atys
ENSCPBG00000001038PABPC410091.429ENSCLAG00000011899PABPC49991.429Chinchilla_lanigera
ENSCPBG00000001038PABPC410087.709ENSCSAG00000001135PABPC49987.709Chlorocebus_sabaeus
ENSCPBG00000001038PABPC48691.557ENSCHOG00000005327PABPC48191.557Choloepus_hoffmanni
ENSCPBG00000001038PABPC49991.626ENSCANG00000034177PABPC49991.626Colobus_angolensis_palliatus
ENSCPBG00000001038PABPC49989.228ENSCGRG00001018166Pabpc410088.661Cricetulus_griseus_chok1gshd
ENSCPBG00000001038PABPC49889.233ENSCGRG00000009777Pabpc410088.658Cricetulus_griseus_crigri
ENSCPBG00000001038PABPC49985.489ENSCSEG00000000130pabpc49986.120Cynoglossus_semilaevis
ENSCPBG00000001038PABPC49986.102ENSCVAG00000019246pabpc49986.741Cyprinodon_variegatus
ENSCPBG00000001038PABPC49988.114ENSDARG00000059259pabpc410088.651Danio_rerio
ENSCPBG00000001038PABPC49991.234ENSDNOG00000018444-9991.234Dasypus_novemcinctus
ENSCPBG00000001038PABPC410088.647ENSDORG00000011581Pabpc49988.647Dipodomys_ordii
ENSCPBG00000001038PABPC48759.890ENSETEG00000009172-9959.890Echinops_telfairi
ENSCPBG00000001038PABPC410096.875ENSETEG00000018453-8496.875Echinops_telfairi
ENSCPBG00000001038PABPC49778.837ENSEBUG00000013782pabpc49978.639Eptatretus_burgeri
ENSCPBG00000001038PABPC49978.185ENSEBUG00000000992pabpc49978.185Eptatretus_burgeri
ENSCPBG00000001038PABPC410087.860ENSEASG00005014119PABPC49987.860Equus_asinus_asinus
ENSCPBG00000001038PABPC410087.860ENSECAG00000009396PABPC49987.860Equus_caballus
ENSCPBG00000001038PABPC49885.935ENSEEUG00000002962PABPC49985.584Erinaceus_europaeus
ENSCPBG00000001038PABPC49986.529ENSELUG00000003195pabpc49986.950Esox_lucius
ENSCPBG00000001038PABPC410091.905ENSFCAG00000015254-9991.905Felis_catus
ENSCPBG00000001038PABPC410097.143ENSFALG00000000543PABPC410097.143Ficedula_albicollis
ENSCPBG00000001038PABPC49057.996ENSFDAG00000010581-10055.190Fukomys_damarensis
ENSCPBG00000001038PABPC410086.495ENSFDAG00000020016-9987.405Fukomys_damarensis
ENSCPBG00000001038PABPC410085.827ENSFHEG00000007548pabpc49986.457Fundulus_heteroclitus
ENSCPBG00000001038PABPC410084.277ENSGMOG00000019025pabpc49984.906Gadus_morhua
ENSCPBG00000001038PABPC410097.302ENSGALG00000003800PABPC410097.302Gallus_gallus
ENSCPBG00000001038PABPC49993.396ENSGAFG00000018195pabpc49897.222Gambusia_affinis
ENSCPBG00000001038PABPC49984.385ENSGACG00000007179pabpc49985.016Gasterosteus_aculeatus
ENSCPBG00000001038PABPC410099.048ENSGAGG00000001888PABPC410099.048Gopherus_agassizii
ENSCPBG00000001038PABPC410091.746ENSGGOG00000004002PABPC49991.746Gorilla_gorilla
ENSCPBG00000001038PABPC410085.669ENSHBUG00000020206pabpc49986.299Haplochromis_burtoni
ENSCPBG00000001038PABPC410091.587ENSHGLG00000011162PABPC49991.587Heterocephalus_glaber_female
ENSCPBG00000001038PABPC410091.587ENSHGLG00100001580PABPC49991.587Heterocephalus_glaber_male
ENSCPBG00000001038PABPC49985.940ENSHCOG00000012694pabpc49986.572Hippocampus_comes
ENSCPBG00000001038PABPC49886.035ENSIPUG00000016620pabpc49986.142Ictalurus_punctatus
ENSCPBG00000001038PABPC410089.841ENSSTOG00000010416PABPC49989.841Ictidomys_tridecemlineatus
ENSCPBG00000001038PABPC410086.781ENSJJAG00000007781Pabpc49987.247Jaculus_jaculus
ENSCPBG00000001038PABPC410085.535ENSKMAG00000013597pabpc49986.164Kryptolebias_marmoratus
ENSCPBG00000001038PABPC410085.400ENSLBEG00000013654pabpc49986.028Labrus_bergylta
ENSCPBG00000001038PABPC410093.375ENSLACG00000011907PABPC410093.375Latimeria_chalumnae
ENSCPBG00000001038PABPC410089.342ENSLOCG00000001877pabpc410090.125Lepisosteus_oculatus
ENSCPBG00000001038PABPC410090.000ENSLAFG00000000151PABPC49990.000Loxodonta_africana
ENSCPBG00000001038PABPC410091.746ENSMFAG00000041481PABPC49991.746Macaca_fascicularis
ENSCPBG00000001038PABPC410087.709ENSMMUG00000007497PABPC49987.709Macaca_mulatta
ENSCPBG00000001038PABPC410091.587ENSMNEG00000043054PABPC49991.587Macaca_nemestrina
ENSCPBG00000001038PABPC410091.746ENSMLEG00000040716PABPC49991.746Mandrillus_leucophaeus
ENSCPBG00000001038PABPC49986.010ENSMAMG00000010025pabpc49986.299Mastacembelus_armatus
ENSCPBG00000001038PABPC410085.669ENSMZEG00005006141pabpc49986.299Maylandia_zebra
ENSCPBG00000001038PABPC49993.356ENSMGAG00000005408PABPC410093.356Meleagris_gallopavo
ENSCPBG00000001038PABPC47284.135ENSMAUG00000001295-9784.135Mesocricetus_auratus
ENSCPBG00000001038PABPC45782.635ENSMAUG00000004089-8982.635Mesocricetus_auratus
ENSCPBG00000001038PABPC47694.792ENSMAUG00000019763-8489.908Mesocricetus_auratus
ENSCPBG00000001038PABPC49978.114ENSMICG00000036729-9978.292Microcebus_murinus
ENSCPBG00000001038PABPC48989.146ENSMICG00000016633-10090.036Microcebus_murinus
ENSCPBG00000001038PABPC49991.520ENSMOCG00000006763Pabpc49990.952Microtus_ochrogaster
ENSCPBG00000001038PABPC410083.412ENSMMOG00000002363pabpc49984.543Mola_mola
ENSCPBG00000001038PABPC410090.396ENSMODG00000017657-10090.396Monodelphis_domestica
ENSCPBG00000001038PABPC45974.133ENSMODG00000018051-9674.133Monodelphis_domestica
ENSCPBG00000001038PABPC49985.578ENSMALG00000011017pabpc49985.557Monopterus_albus
ENSCPBG00000001038PABPC410085.736MGP_CAROLIEiJ_G0026435-10097.872Mus_caroli
ENSCPBG00000001038PABPC49977.540MGP_CAROLIEiJ_G0024864-9977.540Mus_caroli
ENSCPBG00000001038PABPC410090.952ENSMUSG00000011257Pabpc410097.024Mus_musculus
ENSCPBG00000001038PABPC49986.000MGP_PahariEiJ_G0028765Pabpc410098.582Mus_pahari
ENSCPBG00000001038PABPC49971.611MGP_SPRETEiJ_G0027415Pabpc410097.872Mus_spretus
ENSCPBG00000001038PABPC410087.860ENSMPUG00000014414-9987.860Mustela_putorius_furo
ENSCPBG00000001038PABPC49549.834ENSMPUG00000006836-10049.834Mustela_putorius_furo
ENSCPBG00000001038PABPC410090.159ENSMLUG00000012068PABPC49990.159Myotis_lucifugus
ENSCPBG00000001038PABPC410089.841ENSNGAG00000018292Pabpc49989.841Nannospalax_galili
ENSCPBG00000001038PABPC46097.115ENSNBRG00000009708pabpc49897.115Neolamprologus_brichardi
ENSCPBG00000001038PABPC46691.667ENSNBRG00000010047-7291.667Neolamprologus_brichardi
ENSCPBG00000001038PABPC410091.746ENSNLEG00000011928PABPC49991.746Nomascus_leucogenys
ENSCPBG00000001038PABPC48593.263ENSOPRG00000011984PABPC48793.263Ochotona_princeps
ENSCPBG00000001038PABPC49980.753ENSODEG00000017434-9981.184Octodon_degus
ENSCPBG00000001038PABPC410091.270ENSODEG00000006592-9991.270Octodon_degus
ENSCPBG00000001038PABPC45384.286ENSODEG00000013457-10084.286Octodon_degus
ENSCPBG00000001038PABPC410085.669ENSONIG00000008176pabpc49986.299Oreochromis_niloticus
ENSCPBG00000001038PABPC410096.667ENSOANG00000010001PABPC410096.667Ornithorhynchus_anatinus
ENSCPBG00000001038PABPC49687.658ENSOCUG00000000562PABPC48887.658Oryctolagus_cuniculus
ENSCPBG00000001038PABPC49993.827ENSORLG00000017479pabpc49993.827Oryzias_latipes
ENSCPBG00000001038PABPC49993.827ENSORLG00020018644pabpc49993.827Oryzias_latipes_hni
ENSCPBG00000001038PABPC49993.827ENSORLG00015015042pabpc49993.827Oryzias_latipes_hsok
ENSCPBG00000001038PABPC49985.987ENSOMEG00000014410pabpc49986.006Oryzias_melastigma
ENSCPBG00000001038PABPC410087.616ENSOGAG00000004067PABPC49988.390Otolemur_garnettii
ENSCPBG00000001038PABPC410087.860ENSOARG00000020060PABPC49987.860Ovis_aries
ENSCPBG00000001038PABPC410091.746ENSPPAG00000043625PABPC49991.746Pan_paniscus
ENSCPBG00000001038PABPC410091.905ENSPPRG00000024727PABPC49991.905Panthera_pardus
ENSCPBG00000001038PABPC410091.905ENSPTIG00000005829PABPC49991.905Panthera_tigris_altaica
ENSCPBG00000001038PABPC410091.746ENSPTRG00000000573PABPC49991.746Pan_troglodytes
ENSCPBG00000001038PABPC410091.905ENSPANG00000009484PABPC49991.905Papio_anubis
ENSCPBG00000001038PABPC49988.013ENSPKIG00000025356pabpc49988.644Paramormyrops_kingsleyae
ENSCPBG00000001038PABPC410099.365ENSPSIG00000016892PABPC410099.365Pelodiscus_sinensis
ENSCPBG00000001038PABPC410083.728ENSPMGG00000009073pabpc49983.728Periophthalmus_magnuspinnatus
ENSCPBG00000001038PABPC410090.635ENSPEMG00000023569-9990.635Peromyscus_maniculatus_bairdii
ENSCPBG00000001038PABPC49985.759ENSPEMG00000024193-9985.759Peromyscus_maniculatus_bairdii
ENSCPBG00000001038PABPC48975.563ENSPMAG00000002836pabpc410076.776Petromyzon_marinus
ENSCPBG00000001038PABPC49772.597ENSPMAG00000007885pabpc49972.565Petromyzon_marinus
ENSCPBG00000001038PABPC49997.613ENSPCIG00000020674PABPC410097.613Phascolarctos_cinereus
ENSCPBG00000001038PABPC410084.882ENSPFOG00000002682pabpc49986.142Poecilia_formosa
ENSCPBG00000001038PABPC410085.039ENSPLAG00000010112pabpc49986.299Poecilia_latipinna
ENSCPBG00000001038PABPC49985.533ENSPMEG00000019739pabpc49986.142Poecilia_mexicana
ENSCPBG00000001038PABPC410085.827ENSPREG00000001589pabpc49986.457Poecilia_reticulata
ENSCPBG00000001038PABPC410087.709ENSPPYG00000001506PABPC49987.709Pongo_abelii
ENSCPBG00000001038PABPC410083.156ENSPCAG00000003341PABPC49983.156Procavia_capensis
ENSCPBG00000001038PABPC410090.967ENSPCOG00000023725-9991.601Propithecus_coquereli
ENSCPBG00000001038PABPC49972.154ENSPCOG00000025882-9971.429Propithecus_coquereli
ENSCPBG00000001038PABPC49986.869ENSPVAG00000002187PABPC49986.869Pteropus_vampyrus
ENSCPBG00000001038PABPC410085.827ENSPNYG00000006134pabpc49986.457Pundamilia_nyererei
ENSCPBG00000001038PABPC410086.385ENSPNAG00000024355pabpc410087.011Pygocentrus_nattereri
ENSCPBG00000001038PABPC410088.180ENSRNOG00000015642Pabpc49988.180Rattus_norvegicus
ENSCPBG00000001038PABPC410086.003ENSRNOG00000028592AABR07035074.19986.003Rattus_norvegicus
ENSCPBG00000001038PABPC410091.746ENSRBIG00000039761PABPC49991.746Rhinopithecus_bieti
ENSCPBG00000001038PABPC410091.746ENSRROG00000033355PABPC49991.746Rhinopithecus_roxellana
ENSCPBG00000001038PABPC410091.746ENSSBOG00000026193PABPC49991.746Saimiri_boliviensis_boliviensis
ENSCPBG00000001038PABPC410094.286ENSSHAG00000018139PABPC410094.286Sarcophilus_harrisii
ENSCPBG00000001038PABPC49988.816ENSSFOG00015023514pabpc49988.816Scleropages_formosus
ENSCPBG00000001038PABPC49985.601ENSSMAG00000009007pabpc49986.234Scophthalmus_maximus
ENSCPBG00000001038PABPC49986.328ENSSDUG00000012683pabpc49986.299Seriola_dumerili
ENSCPBG00000001038PABPC49986.328ENSSLDG00000013025pabpc49986.299Seriola_lalandi_dorsalis
ENSCPBG00000001038PABPC410081.032ENSSARG00000000310PABPC49981.032Sorex_araneus
ENSCPBG00000001038PABPC410096.508ENSSPUG00000003204PABPC410096.508Sphenodon_punctatus
ENSCPBG00000001038PABPC49986.328ENSSPAG00000009252pabpc49986.299Stegastes_partitus
ENSCPBG00000001038PABPC48946.372ENSSSCG00000036170-9646.726Sus_scrofa
ENSCPBG00000001038PABPC410091.905ENSSSCG00000003660-9991.905Sus_scrofa
ENSCPBG00000001038PABPC410092.738ENSTGUG00000001266PABPC410092.738Taeniopygia_guttata
ENSCPBG00000001038PABPC49985.759ENSTRUG00000005907pabpc49986.392Takifugu_rubripes
ENSCPBG00000001038PABPC49982.166ENSTNIG00000016902pabpc49982.166Tetraodon_nigroviridis
ENSCPBG00000001038PABPC49977.104ENSTBEG00000009035PABPC49977.104Tupaia_belangeri
ENSCPBG00000001038PABPC49967.201ENSTTRG00000014340PABPC49975.758Tursiops_truncatus
ENSCPBG00000001038PABPC410091.905ENSUAMG00000000303PABPC49991.905Ursus_americanus
ENSCPBG00000001038PABPC410091.892ENSUMAG00000019585PABPC49991.892Ursus_maritimus
ENSCPBG00000001038PABPC47973.156ENSVPAG00000010041PABPC47373.156Vicugna_pacos
ENSCPBG00000001038PABPC410091.905ENSVVUG00000005215PABPC49991.905Vulpes_vulpes
ENSCPBG00000001038PABPC410087.619ENSXETG00000010946pabpc410087.619Xenopus_tropicalis
ENSCPBG00000001038PABPC46199.405ENSXETG00000027221-10099.405Xenopus_tropicalis
ENSCPBG00000001038PABPC49991.948ENSXCOG00000013190pabpc49693.396Xiphophorus_couchianus
ENSCPBG00000001038PABPC410085.669ENSXMAG00000019007pabpc49986.299Xiphophorus_maculatus

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