EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPBG00000001115 (Gene tree)
Gene ID: 101942196
Gene Symbol: POLR1A
Alias: DKFZP586M0122|FLJ21915|RPA1|RPO1-4
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Minus strand
Length: 61622 bases
Position: chrKK082947.1:5109169-5170790
Accession: 17264
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000001385	RNA_pol_Rpb1_5	PF04998.17	2.4e-101	1	1
ENSCPBP00000001364	RNA_pol_Rpb1_5	PF04998.17	2.5e-101	1	1
ENSCPBP00000001385	RNA_pol_Rpb1_4	PF05000.17	6.6e-25	1	1
ENSCPBP00000001364	RNA_pol_Rpb1_4	PF05000.17	6.9e-25	1	1
ENSCPBP00000001385	RNA_pol_Rpb1_2	PF00623.20	1.3e-70	1	1
ENSCPBP00000001364	RNA_pol_Rpb1_2	PF00623.20	1.4e-70	1	1
ENSCPBP00000001385	RNA_pol_Rpb1_3	PF04983.18	1.7e-38	1	1
ENSCPBP00000001364	RNA_pol_Rpb1_3	PF04983.18	1.8e-38	1	1
ENSCPBP00000001385	RNA_pol_Rpb1_1	PF04997.12	4.7e-25	1	1
ENSCPBP00000001364	RNA_pol_Rpb1_1	PF04997.12	5.1e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000001687	POLR1A-201	6127	XM_008169701	ENSCPBP00000001364	1708 (aa)	XP_008167923	UPI000388C1A2
ENSCPBT00000001712	POLR1A-202	5034	-	ENSCPBP00000001385	1677 (aa)	XP_008167924	UPI00046C176D

Gene Model

Click here to download ENSCPBG00000001115's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000001115's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPBG00000001115	POLR1A	68	32.306	ENSCPBG00000002079	POLR3A	77	32.306
ENSCPBG00000001115	POLR1A	66	33.654	ENSCPBG00000012697	POLR2A	66	32.227

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000001115	POLR1A	99	74.768	ENSG00000068654	POLR1A	99	74.707	Homo_sapiens
ENSCPBG00000001115	POLR1A	70	69.506	ENSAPOG00000017945	polr1a	98	69.506	Acanthochromis_polyacanthus
ENSCPBG00000001115	POLR1A	99	74.680	ENSAMEG00000005807	POLR1A	99	78.769	Ailuropoda_melanoleuca
ENSCPBG00000001115	POLR1A	96	69.535	ENSACIG00000022147	polr1a	99	69.092	Amphilophus_citrinellus
ENSCPBG00000001115	POLR1A	99	66.667	ENSAOCG00000017336	polr1a	99	69.333	Amphiprion_ocellaris
ENSCPBG00000001115	POLR1A	94	72.857	ENSAPEG00000016105	polr1a	98	72.857	Amphiprion_percula
ENSCPBG00000001115	POLR1A	99	67.114	ENSATEG00000016773	polr1a	99	66.783	Anabas_testudineus
ENSCPBG00000001115	POLR1A	86	81.046	ENSAPLG00000013871	POLR1A	100	81.046	Anas_platyrhynchos
ENSCPBG00000001115	POLR1A	99	74.898	ENSACAG00000012141	POLR1A	99	74.898	Anolis_carolinensis
ENSCPBG00000001115	POLR1A	99	73.797	ENSANAG00000033927	POLR1A	99	73.984	Aotus_nancymaae
ENSCPBG00000001115	POLR1A	99	63.201	ENSACLG00000020541	polr1a	99	63.026	Astatotilapia_calliptera
ENSCPBG00000001115	POLR1A	99	74.623	ENSBTAG00000006481	POLR1A	99	74.350	Bos_taurus
ENSCPBG00000001115	POLR1A	99	38.682	WBGene00012999	rpoa-1	77	59.783	Caenorhabditis_elegans
ENSCPBG00000001115	POLR1A	99	73.815	ENSCJAG00000019547	POLR1A	99	73.973	Callithrix_jacchus
ENSCPBG00000001115	POLR1A	99	75.146	ENSCAFG00000007613	POLR1A	99	75.611	Canis_familiaris
ENSCPBG00000001115	POLR1A	99	74.956	ENSCAFG00020014752	POLR1A	99	75.421	Canis_lupus_dingo
ENSCPBG00000001115	POLR1A	99	74.444	ENSCHIG00000018204	POLR1A	99	74.444	Capra_hircus
ENSCPBG00000001115	POLR1A	99	73.807	ENSTSYG00000002761	POLR1A	99	73.438	Carlito_syrichta
ENSCPBG00000001115	POLR1A	97	70.652	ENSCAPG00000010132	POLR1A	99	70.652	Cavia_aperea
ENSCPBG00000001115	POLR1A	99	74.169	ENSCPOG00000012350	POLR1A	99	74.169	Cavia_porcellus
ENSCPBG00000001115	POLR1A	99	73.511	ENSCCAG00000019839	POLR1A	99	74.087	Cebus_capucinus
ENSCPBG00000001115	POLR1A	99	74.724	ENSCATG00000029786	POLR1A	99	74.448	Cercocebus_atys
ENSCPBG00000001115	POLR1A	99	73.690	ENSCLAG00000005187	POLR1A	99	73.632	Chinchilla_lanigera
ENSCPBG00000001115	POLR1A	99	74.681	ENSCSAG00000016251	POLR1A	99	74.390	Chlorocebus_sabaeus
ENSCPBG00000001115	POLR1A	99	46.089	ENSCSAVG00000007184	-	99	46.911	Ciona_savignyi
ENSCPBG00000001115	POLR1A	99	71.835	ENSCANG00000031785	POLR1A	99	71.893	Colobus_angolensis_palliatus
ENSCPBG00000001115	POLR1A	99	69.616	ENSCGRG00001006651	Polr1a	99	69.512	Cricetulus_griseus_chok1gshd
ENSCPBG00000001115	POLR1A	60	73.028	ENSCGRG00000010834	Polr1a	99	73.028	Cricetulus_griseus_crigri
ENSCPBG00000001115	POLR1A	99	63.796	ENSCSEG00000020190	polr1a	99	63.562	Cynoglossus_semilaevis
ENSCPBG00000001115	POLR1A	99	64.855	ENSCVAG00000020941	polr1a	99	65.101	Cyprinodon_variegatus
ENSCPBG00000001115	POLR1A	99	67.700	ENSDARG00000098375	polr1a	99	67.446	Danio_rerio
ENSCPBG00000001115	POLR1A	99	70.314	ENSDNOG00000010829	POLR1A	99	70.314	Dasypus_novemcinctus
ENSCPBG00000001115	POLR1A	99	74.113	ENSDORG00000008298	Polr1a	99	74.055	Dipodomys_ordii
ENSCPBG00000001115	POLR1A	80	44.387	FBgn0019938	RpI1	99	42.932	Drosophila_melanogaster
ENSCPBG00000001115	POLR1A	72	93.548	ENSETEG00000000412	-	71	93.548	Echinops_telfairi
ENSCPBG00000001115	POLR1A	82	65.385	ENSEBUG00000005667	-	99	47.161	Eptatretus_burgeri
ENSCPBG00000001115	POLR1A	99	75.247	ENSEASG00005001625	POLR1A	99	74.855	Equus_asinus_asinus
ENSCPBG00000001115	POLR1A	95	79.375	ENSECAG00000010092	POLR1A	99	79.375	Equus_caballus
ENSCPBG00000001115	POLR1A	95	79.375	ENSECAG00000036306	-	99	79.375	Equus_caballus
ENSCPBG00000001115	POLR1A	95	79.375	ENSECAG00000030510	-	99	79.375	Equus_caballus
ENSCPBG00000001115	POLR1A	81	88.095	ENSEEUG00000000676	POLR1A	81	88.095	Erinaceus_europaeus
ENSCPBG00000001115	POLR1A	99	68.600	ENSELUG00000012769	polr1a	98	68.735	Esox_lucius
ENSCPBG00000001115	POLR1A	99	74.811	ENSFCAG00000008966	POLR1A	99	75.044	Felis_catus
ENSCPBG00000001115	POLR1A	99	80.012	ENSFALG00000010082	POLR1A	100	80.012	Ficedula_albicollis
ENSCPBG00000001115	POLR1A	99	74.126	ENSFDAG00000013726	POLR1A	99	74.316	Fukomys_damarensis
ENSCPBG00000001115	POLR1A	99	63.231	ENSFHEG00000005996	polr1a	99	63.510	Fundulus_heteroclitus
ENSCPBG00000001115	POLR1A	99	60.411	ENSGMOG00000002230	polr1a	99	60.340	Gadus_morhua
ENSCPBG00000001115	POLR1A	92	78.700	ENSGALG00000038160	-	99	78.829	Gallus_gallus
ENSCPBG00000001115	POLR1A	99	65.539	ENSGAFG00000015266	polr1a	99	65.578	Gambusia_affinis
ENSCPBG00000001115	POLR1A	99	65.451	ENSGACG00000018791	polr1a	99	65.914	Gasterosteus_aculeatus
ENSCPBG00000001115	POLR1A	89	97.448	ENSGAGG00000004984	-	99	97.438	Gopherus_agassizii
ENSCPBG00000001115	POLR1A	99	74.826	ENSGGOG00000001788	POLR1A	99	74.551	Gorilla_gorilla
ENSCPBG00000001115	POLR1A	91	65.131	ENSHBUG00000020021	polr1a	99	64.992	Haplochromis_burtoni
ENSCPBG00000001115	POLR1A	99	75.000	ENSHGLG00000006334	POLR1A	99	75.000	Heterocephalus_glaber_female
ENSCPBG00000001115	POLR1A	99	74.782	ENSHGLG00100006614	POLR1A	99	74.782	Heterocephalus_glaber_male
ENSCPBG00000001115	POLR1A	99	63.456	ENSHCOG00000003345	polr1a	99	62.937	Hippocampus_comes
ENSCPBG00000001115	POLR1A	99	69.334	ENSIPUG00000013174	polr1a	99	68.966	Ictalurus_punctatus
ENSCPBG00000001115	POLR1A	99	73.492	ENSSTOG00000012580	POLR1A	99	74.446	Ictidomys_tridecemlineatus
ENSCPBG00000001115	POLR1A	99	74.405	ENSJJAG00000013113	Polr1a	99	74.869	Jaculus_jaculus
ENSCPBG00000001115	POLR1A	99	67.351	ENSKMAG00000007399	polr1a	99	66.997	Kryptolebias_marmoratus
ENSCPBG00000001115	POLR1A	94	69.366	ENSLBEG00000015401	polr1a	99	69.474	Labrus_bergylta
ENSCPBG00000001115	POLR1A	54	78.993	ENSLACG00000003218	polr1a	99	78.993	Latimeria_chalumnae
ENSCPBG00000001115	POLR1A	99	72.839	ENSLOCG00000010881	polr1a	99	72.839	Lepisosteus_oculatus
ENSCPBG00000001115	POLR1A	99	74.985	ENSLAFG00000014948	POLR1A	99	74.927	Loxodonta_africana
ENSCPBG00000001115	POLR1A	99	74.375	ENSMFAG00000046097	POLR1A	99	74.332	Macaca_fascicularis
ENSCPBG00000001115	POLR1A	99	74.375	ENSMMUG00000015815	POLR1A	99	74.332	Macaca_mulatta
ENSCPBG00000001115	POLR1A	99	74.375	ENSMNEG00000043313	POLR1A	99	74.332	Macaca_nemestrina
ENSCPBG00000001115	POLR1A	99	73.852	ENSMLEG00000042428	POLR1A	99	73.868	Mandrillus_leucophaeus
ENSCPBG00000001115	POLR1A	99	66.783	ENSMAMG00000016565	polr1a	99	67.428	Mastacembelus_armatus
ENSCPBG00000001115	POLR1A	99	66.725	ENSMZEG00005004915	polr1a	99	66.550	Maylandia_zebra
ENSCPBG00000001115	POLR1A	100	77.333	ENSMGAG00000013111	POLR1A	100	77.449	Meleagris_gallopavo
ENSCPBG00000001115	POLR1A	92	74.541	ENSMAUG00000008497	Polr1a	99	74.541	Mesocricetus_auratus
ENSCPBG00000001115	POLR1A	99	74.375	ENSMICG00000000757	POLR1A	99	74.681	Microcebus_murinus
ENSCPBG00000001115	POLR1A	99	74.214	ENSMOCG00000000122	Polr1a	99	74.331	Microtus_ochrogaster
ENSCPBG00000001115	POLR1A	99	65.689	ENSMMOG00000010216	polr1a	99	65.421	Mola_mola
ENSCPBG00000001115	POLR1A	99	71.182	ENSMODG00000009335	POLR1A	99	71.313	Monodelphis_domestica
ENSCPBG00000001115	POLR1A	99	66.647	ENSMALG00000013363	polr1a	99	66.842	Monopterus_albus
ENSCPBG00000001115	POLR1A	99	73.399	MGP_CAROLIEiJ_G0028494	Polr1a	99	73.577	Mus_caroli
ENSCPBG00000001115	POLR1A	99	74.055	ENSMUSG00000049553	Polr1a	99	73.868	Mus_musculus
ENSCPBG00000001115	POLR1A	99	74.519	MGP_PahariEiJ_G0022230	Polr1a	99	74.289	Mus_pahari
ENSCPBG00000001115	POLR1A	99	72.556	MGP_SPRETEiJ_G0029499	Polr1a	99	73.013	Mus_spretus
ENSCPBG00000001115	POLR1A	99	75.073	ENSMPUG00000009135	POLR1A	99	75.363	Mustela_putorius_furo
ENSCPBG00000001115	POLR1A	99	74.754	ENSMLUG00000015723	POLR1A	99	74.812	Myotis_lucifugus
ENSCPBG00000001115	POLR1A	99	73.465	ENSNGAG00000017907	Polr1a	99	74.115	Nannospalax_galili
ENSCPBG00000001115	POLR1A	99	66.608	ENSNBRG00000000519	polr1a	99	66.492	Neolamprologus_brichardi
ENSCPBG00000001115	POLR1A	99	72.864	ENSNLEG00000002264	POLR1A	99	72.764	Nomascus_leucogenys
ENSCPBG00000001115	POLR1A	75	95.238	ENSMEUG00000011665	-	75	95.238	Notamacropus_eugenii
ENSCPBG00000001115	POLR1A	99	69.098	ENSOPRG00000008269	POLR1A	99	69.586	Ochotona_princeps
ENSCPBG00000001115	POLR1A	99	74.256	ENSODEG00000003542	POLR1A	99	74.197	Octodon_degus
ENSCPBG00000001115	POLR1A	99	67.076	ENSONIG00000015895	polr1a	99	66.841	Oreochromis_niloticus
ENSCPBG00000001115	POLR1A	99	74.681	ENSOCUG00000010138	POLR1A	99	75.350	Oryctolagus_cuniculus
ENSCPBG00000001115	POLR1A	99	66.239	ENSORLG00000008753	polr1a	99	66.356	Oryzias_latipes
ENSCPBG00000001115	POLR1A	99	64.816	ENSORLG00020020726	polr1a	99	64.950	Oryzias_latipes_hni
ENSCPBG00000001115	POLR1A	95	80.000	ENSORLG00015016071	polr1a	98	80.000	Oryzias_latipes_hsok
ENSCPBG00000001115	POLR1A	99	74.565	ENSOGAG00000004031	POLR1A	99	74.638	Otolemur_garnettii
ENSCPBG00000001115	POLR1A	99	74.102	ENSOARG00000020601	POLR1A	99	74.173	Ovis_aries
ENSCPBG00000001115	POLR1A	99	74.768	ENSPPAG00000042450	POLR1A	99	74.493	Pan_paniscus
ENSCPBG00000001115	POLR1A	99	74.927	ENSPPRG00000006702	POLR1A	99	74.927	Panthera_pardus
ENSCPBG00000001115	POLR1A	99	74.493	ENSPTIG00000018783	POLR1A	99	74.493	Panthera_tigris_altaica
ENSCPBG00000001115	POLR1A	99	74.261	ENSPTRG00000012147	POLR1A	99	74.435	Pan_troglodytes
ENSCPBG00000001115	POLR1A	99	74.550	ENSPANG00000025908	POLR1A	99	74.274	Papio_anubis
ENSCPBG00000001115	POLR1A	94	78.571	ENSPKIG00000005468	polr1a	98	78.571	Paramormyrops_kingsleyae
ENSCPBG00000001115	POLR1A	63	92.358	ENSPSIG00000009321	-	100	92.358	Pelodiscus_sinensis
ENSCPBG00000001115	POLR1A	56	68.090	ENSPMGG00000009718	polr1a	95	68.090	Periophthalmus_magnuspinnatus
ENSCPBG00000001115	POLR1A	99	74.214	ENSPEMG00000022224	Polr1a	99	74.113	Peromyscus_maniculatus_bairdii
ENSCPBG00000001115	POLR1A	97	74.985	ENSPCIG00000004222	POLR1A	99	74.527	Phascolarctos_cinereus
ENSCPBG00000001115	POLR1A	99	65.625	ENSPFOG00000005025	polr1a	99	66.028	Poecilia_formosa
ENSCPBG00000001115	POLR1A	99	65.799	ENSPLAG00000021389	polr1a	99	66.201	Poecilia_latipinna
ENSCPBG00000001115	POLR1A	99	63.842	ENSPMEG00000006463	polr1a	99	64.423	Poecilia_mexicana
ENSCPBG00000001115	POLR1A	99	66.165	ENSPREG00000002389	polr1a	99	66.415	Poecilia_reticulata
ENSCPBG00000001115	POLR1A	99	73.730	ENSPPYG00000012217	POLR1A	99	73.739	Pongo_abelii
ENSCPBG00000001115	POLR1A	83	92.308	ENSPCAG00000011582	POLR1A	82	92.308	Procavia_capensis
ENSCPBG00000001115	POLR1A	99	74.550	ENSPCOG00000026987	POLR1A	99	74.797	Propithecus_coquereli
ENSCPBG00000001115	POLR1A	94	73.948	ENSPVAG00000012674	POLR1A	95	73.599	Pteropus_vampyrus
ENSCPBG00000001115	POLR1A	99	66.667	ENSPNYG00000000026	polr1a	99	66.492	Pundamilia_nyererei
ENSCPBG00000001115	POLR1A	99	68.520	ENSPNAG00000019223	polr1a	99	69.720	Pygocentrus_nattereri
ENSCPBG00000001115	POLR1A	99	74.709	ENSRNOG00000009545	Polr1a	99	74.810	Rattus_norvegicus
ENSCPBG00000001115	POLR1A	99	74.291	ENSRBIG00000028335	POLR1A	99	74.768	Rhinopithecus_bieti
ENSCPBG00000001115	POLR1A	99	74.233	ENSRROG00000031473	POLR1A	99	74.710	Rhinopithecus_roxellana
ENSCPBG00000001115	POLR1A	99	37.592	YOR341W	RPA190	99	37.754	Saccharomyces_cerevisiae
ENSCPBG00000001115	POLR1A	99	73.840	ENSSBOG00000030262	POLR1A	99	73.868	Saimiri_boliviensis_boliviensis
ENSCPBG00000001115	POLR1A	99	68.934	ENSSHAG00000014739	POLR1A	99	68.983	Sarcophilus_harrisii
ENSCPBG00000001115	POLR1A	99	70.334	ENSSFOG00015019716	polr1a	99	70.392	Scleropages_formosus
ENSCPBG00000001115	POLR1A	99	66.997	ENSSMAG00000014342	polr1a	99	66.628	Scophthalmus_maximus
ENSCPBG00000001115	POLR1A	99	67.462	ENSSDUG00000014631	polr1a	99	67.716	Seriola_dumerili
ENSCPBG00000001115	POLR1A	99	66.238	ENSSLDG00000024095	polr1a	99	66.414	Seriola_lalandi_dorsalis
ENSCPBG00000001115	POLR1A	72	97.561	ENSSARG00000003136	-	71	97.561	Sorex_araneus
ENSCPBG00000001115	POLR1A	99	79.094	ENSSPUG00000004215	POLR1A	99	84.536	Sphenodon_punctatus
ENSCPBG00000001115	POLR1A	66	72.637	ENSSPAG00000016341	polr1a	94	72.637	Stegastes_partitus
ENSCPBG00000001115	POLR1A	85	77.295	ENSSSCG00000008226	POLR1A	99	77.231	Sus_scrofa
ENSCPBG00000001115	POLR1A	99	79.703	ENSTGUG00000010704	POLR1A	99	79.703	Taeniopygia_guttata
ENSCPBG00000001115	POLR1A	99	65.149	ENSTRUG00000002210	polr1a	99	64.836	Takifugu_rubripes
ENSCPBG00000001115	POLR1A	99	60.681	ENSTNIG00000010116	polr1a	99	60.681	Tetraodon_nigroviridis
ENSCPBG00000001115	POLR1A	70	92.308	ENSTBEG00000008646	POLR1A	69	92.308	Tupaia_belangeri
ENSCPBG00000001115	POLR1A	99	71.345	ENSTTRG00000008597	POLR1A	99	71.695	Tursiops_truncatus
ENSCPBG00000001115	POLR1A	68	75.953	ENSUAMG00000012158	-	94	76.291	Ursus_americanus
ENSCPBG00000001115	POLR1A	99	74.782	ENSUMAG00000006700	POLR1A	97	78.261	Ursus_maritimus
ENSCPBG00000001115	POLR1A	99	75.087	ENSVVUG00000001245	POLR1A	99	75.611	Vulpes_vulpes
ENSCPBG00000001115	POLR1A	99	68.823	ENSXETG00000001952	polr1a	99	70.084	Xenopus_tropicalis
ENSCPBG00000001115	POLR1A	99	66.027	ENSXMAG00000004032	polr1a	99	66.201	Xiphophorus_maculatus