EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPBG00000001146 (Gene tree)
Gene ID: 101935636
Gene Symbol: SMARCA1
Alias: ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SWI|hSNF2L
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Plus strand
Length: 60402 bases
Position: chrKK082954.1:5787992-5848393
Accession: 11097
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000001407	ResIII	PF04851.15	4.1e-11	1	1
ENSCPBP00000001422	ResIII	PF04851.15	4.1e-11	1	1
ENSCPBP00000001437	ResIII	PF04851.15	5.7e-11	1	1
ENSCPBP00000001407	DEAD	PF00270.29	1.2e-06	1	1
ENSCPBP00000001422	DEAD	PF00270.29	1.2e-06	1	1
ENSCPBP00000001437	DEAD	PF00270.29	2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000001741	SMARCA1-201	5339	-	ENSCPBP00000001407	1059 (aa)	-	-
ENSCPBT00000001757	SMARCA1-202	5339	-	ENSCPBP00000001422	1059 (aa)	-	-
ENSCPBT00000001777	SMARCA1-203	3784	-	ENSCPBP00000001437	972 (aa)	-	-

Gene Model

Click here to download ENSCPBG00000001146's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000001146's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPBG00000001146	SMARCA1	93	87.449	ENSCPBG00000027535	SMARCA5	95	87.449
ENSCPBG00000001146	SMARCA1	53	43.958	ENSCPBG00000002600	CHD1L	62	43.958

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000001146	SMARCA1	94	92.793	ENSG00000102038	SMARCA1	95	92.707	Homo_sapiens
ENSCPBG00000001146	SMARCA1	92	84.734	ENSAPOG00000016035	smarca5	98	84.792	Acanthochromis_polyacanthus
ENSCPBG00000001146	SMARCA1	94	91.592	ENSAMEG00000015218	SMARCA1	95	91.510	Ailuropoda_melanoleuca
ENSCPBG00000001146	SMARCA1	85	84.939	ENSACIG00000016982	smarca5	99	85.045	Amphilophus_citrinellus
ENSCPBG00000001146	SMARCA1	92	84.734	ENSAOCG00000015578	smarca5	95	83.992	Amphiprion_ocellaris
ENSCPBG00000001146	SMARCA1	92	84.734	ENSAPEG00000011117	smarca5	99	84.788	Amphiprion_percula
ENSCPBG00000001146	SMARCA1	93	84.114	ENSATEG00000012894	smarca5	93	85.835	Anabas_testudineus
ENSCPBG00000001146	SMARCA1	93	97.862	ENSAPLG00000013149	SMARCA1	100	97.862	Anas_platyrhynchos
ENSCPBG00000001146	SMARCA1	95	96.404	ENSACAG00000011376	SMARCA1	95	96.404	Anolis_carolinensis
ENSCPBG00000001146	SMARCA1	94	87.688	ENSANAG00000023098	SMARCA1	94	87.612	Aotus_nancymaae
ENSCPBG00000001146	SMARCA1	93	84.725	ENSACLG00000025356	smarca5	95	84.397	Astatotilapia_calliptera
ENSCPBG00000001146	SMARCA1	92	85.391	ENSAMXG00000005709	smarca5	94	85.231	Astyanax_mexicanus
ENSCPBG00000001146	SMARCA1	88	91.828	ENSAMXG00000011227	smarca1	99	91.828	Astyanax_mexicanus
ENSCPBG00000001146	SMARCA1	94	92.377	ENSBTAG00000002292	SMARCA1	94	91.405	Bos_taurus
ENSCPBG00000001146	SMARCA1	94	62.685	WBGene00002169	isw-1	99	62.685	Caenorhabditis_elegans
ENSCPBG00000001146	SMARCA1	94	92.693	ENSCJAG00000002868	SMARCA1	95	92.607	Callithrix_jacchus
ENSCPBG00000001146	SMARCA1	91	93.084	ENSCAFG00000018673	SMARCA1	99	83.765	Canis_familiaris
ENSCPBG00000001146	SMARCA1	94	92.993	ENSCAFG00020001751	SMARCA1	95	92.907	Canis_lupus_dingo
ENSCPBG00000001146	SMARCA1	94	92.593	ENSCHIG00000009837	SMARCA1	94	92.507	Capra_hircus
ENSCPBG00000001146	SMARCA1	95	93.372	ENSTSYG00000004240	SMARCA1	98	92.089	Carlito_syrichta
ENSCPBG00000001146	SMARCA1	94	91.343	ENSCPOG00000013601	SMARCA1	95	91.261	Cavia_porcellus
ENSCPBG00000001146	SMARCA1	94	89.790	ENSCCAG00000030817	SMARCA1	95	89.710	Cebus_capucinus
ENSCPBG00000001146	SMARCA1	94	91.691	ENSCATG00000015921	SMARCA1	94	92.835	Cercocebus_atys
ENSCPBG00000001146	SMARCA1	94	91.992	ENSCLAG00000002171	SMARCA1	95	91.908	Chinchilla_lanigera
ENSCPBG00000001146	SMARCA1	94	92.793	ENSCSAG00000008460	SMARCA1	95	92.707	Chlorocebus_sabaeus
ENSCPBG00000001146	SMARCA1	93	73.259	ENSCING00000004110	swi/snf	97	73.259	Ciona_intestinalis
ENSCPBG00000001146	SMARCA1	93	73.488	ENSCSAVG00000004620	-	100	74.499	Ciona_savignyi
ENSCPBG00000001146	SMARCA1	94	92.693	ENSCANG00000007183	SMARCA1	95	92.607	Colobus_angolensis_palliatus
ENSCPBG00000001146	SMARCA1	94	91.767	ENSCGRG00001010776	Smarca1	97	89.300	Cricetulus_griseus_chok1gshd
ENSCPBG00000001146	SMARCA1	92	90.835	ENSCGRG00000015301	Smarca1	98	90.835	Cricetulus_griseus_crigri
ENSCPBG00000001146	SMARCA1	92	84.631	ENSCSEG00000000328	smarca5	95	83.992	Cynoglossus_semilaevis
ENSCPBG00000001146	SMARCA1	93	83.910	ENSCVAG00000008668	smarca5	99	84.335	Cyprinodon_variegatus
ENSCPBG00000001146	SMARCA1	94	88.473	ENSDARG00000012776	smarca1	98	88.137	Danio_rerio
ENSCPBG00000001146	SMARCA1	94	83.149	ENSDARG00000052348	smarca5	96	83.149	Danio_rerio
ENSCPBG00000001146	SMARCA1	92	92.016	ENSDNOG00000004315	SMARCA1	94	92.016	Dasypus_novemcinctus
ENSCPBG00000001146	SMARCA1	92	91.812	ENSDORG00000009270	Smarca1	94	91.812	Dipodomys_ordii
ENSCPBG00000001146	SMARCA1	89	74.895	FBgn0011604	Iswi	98	71.909	Drosophila_melanogaster
ENSCPBG00000001146	SMARCA1	77	92.727	ENSETEG00000017426	SMARCA1	85	92.727	Echinops_telfairi
ENSCPBG00000001146	SMARCA1	94	81.463	ENSEBUG00000001239	smarca5	98	81.463	Eptatretus_burgeri
ENSCPBG00000001146	SMARCA1	94	87.500	ENSEASG00005008218	SMARCA1	100	88.990	Equus_asinus_asinus
ENSCPBG00000001146	SMARCA1	94	92.793	ENSECAG00000012106	SMARCA1	94	92.707	Equus_caballus
ENSCPBG00000001146	SMARCA1	75	92.715	ENSEEUG00000014927	SMARCA1	82	92.715	Erinaceus_europaeus
ENSCPBG00000001146	SMARCA1	95	89.662	ENSELUG00000010515	smarca1	98	89.989	Esox_lucius
ENSCPBG00000001146	SMARCA1	95	92.607	ENSFCAG00000018496	SMARCA1	96	91.194	Felis_catus
ENSCPBG00000001146	SMARCA1	86	97.588	ENSFALG00000000209	SMARCA1	98	97.588	Ficedula_albicollis
ENSCPBG00000001146	SMARCA1	92	91.296	ENSFDAG00000009818	SMARCA1	97	91.296	Fukomys_damarensis
ENSCPBG00000001146	SMARCA1	93	84.216	ENSFHEG00000007687	smarca5	94	83.891	Fundulus_heteroclitus
ENSCPBG00000001146	SMARCA1	92	97.955	ENSGALG00000008431	SMARCA1	97	97.955	Gallus_gallus
ENSCPBG00000001146	SMARCA1	93	84.420	ENSGAFG00000017731	smarca5	95	84.093	Gambusia_affinis
ENSCPBG00000001146	SMARCA1	92	100.000	ENSGAGG00000023575	SMARCA1	100	100.000	Gopherus_agassizii
ENSCPBG00000001146	SMARCA1	70	87.288	ENSGGOG00000012841	-	95	87.288	Gorilla_gorilla
ENSCPBG00000001146	SMARCA1	94	91.491	ENSHGLG00000003080	SMARCA1	95	91.409	Heterocephalus_glaber_female
ENSCPBG00000001146	SMARCA1	94	91.109	ENSHGLG00100001102	SMARCA1	100	91.109	Heterocephalus_glaber_male
ENSCPBG00000001146	SMARCA1	92	84.458	ENSHCOG00000005458	smarca5	95	83.992	Hippocampus_comes
ENSCPBG00000001146	SMARCA1	93	84.312	ENSIPUG00000005229	SMARCA5	98	84.312	Ictalurus_punctatus
ENSCPBG00000001146	SMARCA1	94	89.178	ENSIPUG00000016905	Smarca1	99	89.990	Ictalurus_punctatus
ENSCPBG00000001146	SMARCA1	95	92.807	ENSSTOG00000014524	SMARCA1	99	89.902	Ictidomys_tridecemlineatus
ENSCPBG00000001146	SMARCA1	95	91.188	ENSJJAG00000002593	Smarca1	95	91.188	Jaculus_jaculus
ENSCPBG00000001146	SMARCA1	92	84.151	ENSKMAG00000003777	smarca5	95	83.688	Kryptolebias_marmoratus
ENSCPBG00000001146	SMARCA1	93	83.519	ENSLBEG00000018112	smarca5	95	83.519	Labrus_bergylta
ENSCPBG00000001146	SMARCA1	88	85.054	ENSLBEG00000013295	SMARCA1	100	85.714	Labrus_bergylta
ENSCPBG00000001146	SMARCA1	95	94.118	ENSLACG00000016697	SMARCA1	99	94.118	Latimeria_chalumnae
ENSCPBG00000001146	SMARCA1	94	91.908	ENSLOCG00000014591	smarca1	97	91.908	Lepisosteus_oculatus
ENSCPBG00000001146	SMARCA1	94	91.849	ENSLAFG00000000896	SMARCA1	100	91.849	Loxodonta_africana
ENSCPBG00000001146	SMARCA1	94	92.793	ENSMFAG00000002117	SMARCA1	99	91.767	Macaca_fascicularis
ENSCPBG00000001146	SMARCA1	94	91.691	ENSMMUG00000008818	SMARCA1	99	93.187	Macaca_mulatta
ENSCPBG00000001146	SMARCA1	94	91.767	ENSMNEG00000041768	SMARCA1	99	91.767	Macaca_nemestrina
ENSCPBG00000001146	SMARCA1	94	92.693	ENSMLEG00000043198	SMARCA1	95	92.607	Mandrillus_leucophaeus
ENSCPBG00000001146	SMARCA1	93	84.420	ENSMAMG00000014294	smarca5	95	84.093	Mastacembelus_armatus
ENSCPBG00000001146	SMARCA1	93	84.725	ENSMZEG00005009369	smarca5	95	84.397	Maylandia_zebra
ENSCPBG00000001146	SMARCA1	95	96.548	ENSMGAG00000007042	SMARCA1	99	96.548	Meleagris_gallopavo
ENSCPBG00000001146	SMARCA1	92	91.095	ENSMAUG00000008133	Smarca1	94	90.733	Mesocricetus_auratus
ENSCPBG00000001146	SMARCA1	95	92.907	ENSMICG00000015768	SMARCA1	95	92.907	Microcebus_murinus
ENSCPBG00000001146	SMARCA1	94	91.209	ENSMOCG00000009464	Smarca1	97	89.061	Microtus_ochrogaster
ENSCPBG00000001146	SMARCA1	93	82.472	ENSMMOG00000005547	smarca5	99	82.472	Mola_mola
ENSCPBG00000001146	SMARCA1	97	95.010	ENSMODG00000013187	-	98	95.010	Monodelphis_domestica
ENSCPBG00000001146	SMARCA1	92	84.356	ENSMALG00000002081	smarca5	97	84.314	Monopterus_albus
ENSCPBG00000001146	SMARCA1	95	90.954	MGP_CAROLIEiJ_G0033034	Smarca1	95	90.954	Mus_caroli
ENSCPBG00000001146	SMARCA1	95	91.054	ENSMUSG00000031099	Smarca1	97	89.255	Mus_musculus
ENSCPBG00000001146	SMARCA1	94	91.109	MGP_PahariEiJ_G0031579	Smarca1	95	90.755	Mus_pahari
ENSCPBG00000001146	SMARCA1	95	91.054	MGP_SPRETEiJ_G0034192	Smarca1	97	89.255	Mus_spretus
ENSCPBG00000001146	SMARCA1	94	91.691	ENSMPUG00000017423	SMARCA1	89	91.609	Mustela_putorius_furo
ENSCPBG00000001146	SMARCA1	95	90.049	ENSMLUG00000029614	SMARCA1	97	88.196	Myotis_lucifugus
ENSCPBG00000001146	SMARCA1	92	92.119	ENSNGAG00000006492	Smarca1	93	92.119	Nannospalax_galili
ENSCPBG00000001146	SMARCA1	93	84.725	ENSNBRG00000004463	smarca5	99	84.397	Neolamprologus_brichardi
ENSCPBG00000001146	SMARCA1	94	91.098	ENSNLEG00000015179	SMARCA1	98	92.033	Nomascus_leucogenys
ENSCPBG00000001146	SMARCA1	87	95.612	ENSMEUG00000008819	SMARCA1	100	86.975	Notamacropus_eugenii
ENSCPBG00000001146	SMARCA1	94	90.986	ENSODEG00000012163	SMARCA1	94	90.900	Octodon_degus
ENSCPBG00000001146	SMARCA1	93	84.725	ENSONIG00000009993	smarca5	95	84.397	Oreochromis_niloticus
ENSCPBG00000001146	SMARCA1	92	98.354	ENSOANG00000002862	SMARCA1	100	98.354	Ornithorhynchus_anatinus
ENSCPBG00000001146	SMARCA1	94	92.192	ENSOCUG00000001047	SMARCA1	97	90.439	Oryctolagus_cuniculus
ENSCPBG00000001146	SMARCA1	92	85.072	ENSORLG00000021998	smarca5	95	84.600	Oryzias_latipes
ENSCPBG00000001146	SMARCA1	92	85.174	ENSORLG00020017679	smarca5	95	84.701	Oryzias_latipes_hni
ENSCPBG00000001146	SMARCA1	92	85.072	ENSORLG00015017210	smarca5	95	84.498	Oryzias_latipes_hsok
ENSCPBG00000001146	SMARCA1	92	85.174	ENSOMEG00000000086	smarca5	95	84.600	Oryzias_melastigma
ENSCPBG00000001146	SMARCA1	92	92.097	ENSOGAG00000004399	SMARCA1	94	92.012	Otolemur_garnettii
ENSCPBG00000001146	SMARCA1	93	93.061	ENSOARG00000014638	SMARCA1	100	93.061	Ovis_aries
ENSCPBG00000001146	SMARCA1	94	92.793	ENSPPAG00000034647	SMARCA1	95	92.707	Pan_paniscus
ENSCPBG00000001146	SMARCA1	95	92.807	ENSPPRG00000008929	SMARCA1	96	91.389	Panthera_pardus
ENSCPBG00000001146	SMARCA1	94	90.954	ENSPTIG00000000915	SMARCA1	98	90.954	Panthera_tigris_altaica
ENSCPBG00000001146	SMARCA1	94	92.793	ENSPTRG00000049876	SMARCA1	94	92.835	Pan_troglodytes
ENSCPBG00000001146	SMARCA1	94	92.793	ENSPANG00000003871	SMARCA1	95	92.707	Papio_anubis
ENSCPBG00000001146	SMARCA1	88	90.655	ENSPKIG00000013411	smarca1	94	90.675	Paramormyrops_kingsleyae
ENSCPBG00000001146	SMARCA1	95	98.124	ENSPSIG00000010101	SMARCA1	100	99.383	Pelodiscus_sinensis
ENSCPBG00000001146	SMARCA1	92	91.709	ENSPEMG00000017503	Smarca1	94	91.344	Peromyscus_maniculatus_bairdii
ENSCPBG00000001146	SMARCA1	96	95.780	ENSPCIG00000015460	SMARCA1	100	95.780	Phascolarctos_cinereus
ENSCPBG00000001146	SMARCA1	92	84.458	ENSPFOG00000007649	smarca5	95	83.891	Poecilia_formosa
ENSCPBG00000001146	SMARCA1	92	84.458	ENSPLAG00000003363	smarca5	95	83.891	Poecilia_latipinna
ENSCPBG00000001146	SMARCA1	92	84.560	ENSPMEG00000019849	smarca5	95	83.992	Poecilia_mexicana
ENSCPBG00000001146	SMARCA1	92	84.560	ENSPREG00000023250	smarca5	95	83.992	Poecilia_reticulata
ENSCPBG00000001146	SMARCA1	94	89.990	ENSPPYG00000020703	SMARCA1	95	89.910	Pongo_abelii
ENSCPBG00000001146	SMARCA1	74	84.832	ENSPCOG00000020722	SMARCA1	94	88.840	Propithecus_coquereli
ENSCPBG00000001146	SMARCA1	92	91.268	ENSPVAG00000003805	SMARCA1	88	91.268	Pteropus_vampyrus
ENSCPBG00000001146	SMARCA1	55	87.397	ENSPNYG00000012299	smarca5	91	86.486	Pundamilia_nyererei
ENSCPBG00000001146	SMARCA1	94	91.767	ENSRNOG00000003762	Smarca1	95	91.409	Rattus_norvegicus
ENSCPBG00000001146	SMARCA1	94	92.693	ENSRROG00000034167	SMARCA1	95	92.607	Rhinopithecus_roxellana
ENSCPBG00000001146	SMARCA1	96	90.416	ENSSBOG00000020641	SMARCA1	100	93.367	Saimiri_boliviensis_boliviensis
ENSCPBG00000001146	SMARCA1	92	89.311	ENSSHAG00000013518	SMARCA1	99	89.311	Sarcophilus_harrisii
ENSCPBG00000001146	SMARCA1	95	89.861	ENSSFOG00015009043	smarca1	99	89.861	Scleropages_formosus
ENSCPBG00000001146	SMARCA1	94	84.073	ENSSFOG00015016794	smarca5	100	85.052	Scleropages_formosus
ENSCPBG00000001146	SMARCA1	93	83.384	ENSSMAG00000004801	smarca5	95	83.384	Scophthalmus_maximus
ENSCPBG00000001146	SMARCA1	93	84.012	ENSSDUG00000020690	smarca5	95	83.688	Seriola_dumerili
ENSCPBG00000001146	SMARCA1	93	84.012	ENSSLDG00000025190	smarca5	95	83.688	Seriola_lalandi_dorsalis
ENSCPBG00000001146	SMARCA1	85	84.743	ENSSARG00000000842	SMARCA1	91	84.743	Sorex_araneus
ENSCPBG00000001146	SMARCA1	92	97.546	ENSSPUG00000000590	SMARCA1	95	97.546	Sphenodon_punctatus
ENSCPBG00000001146	SMARCA1	93	84.420	ENSSPAG00000002894	smarca5	97	84.902	Stegastes_partitus
ENSCPBG00000001146	SMARCA1	92	93.299	ENSSSCG00000012649	SMARCA1	94	93.217	Sus_scrofa
ENSCPBG00000001146	SMARCA1	93	97.149	ENSTGUG00000003899	-	100	97.149	Taeniopygia_guttata
ENSCPBG00000001146	SMARCA1	93	84.420	ENSTRUG00000014094	smarca5	95	84.093	Takifugu_rubripes
ENSCPBG00000001146	SMARCA1	92	83.299	ENSTNIG00000017717	smarca5	94	82.675	Tetraodon_nigroviridis
ENSCPBG00000001146	SMARCA1	92	91.549	ENSTBEG00000014973	SMARCA1	93	91.549	Tupaia_belangeri
ENSCPBG00000001146	SMARCA1	91	90.704	ENSTTRG00000006168	SMARCA1	99	88.595	Tursiops_truncatus
ENSCPBG00000001146	SMARCA1	94	92.392	ENSUAMG00000020201	SMARCA1	95	92.308	Ursus_americanus
ENSCPBG00000001146	SMARCA1	95	87.167	ENSUMAG00000004073	SMARCA1	98	92.105	Ursus_maritimus
ENSCPBG00000001146	SMARCA1	79	93.478	ENSVPAG00000010492	-	80	93.478	Vicugna_pacos
ENSCPBG00000001146	SMARCA1	94	93.000	ENSVVUG00000008878	SMARCA1	99	93.724	Vulpes_vulpes
ENSCPBG00000001146	SMARCA1	94	93.280	ENSXETG00000001526	smarca1	100	93.280	Xenopus_tropicalis
ENSCPBG00000001146	SMARCA1	93	84.318	ENSXCOG00000011170	smarca5	98	83.992	Xiphophorus_couchianus
ENSCPBG00000001146	SMARCA1	93	84.318	ENSXMAG00000009678	smarca5	97	85.840	Xiphophorus_maculatus