EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPBG00000003051 (Gene tree)
Gene ID: 101931480
Gene Symbol: TRUB1
Alias: PUS4
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Minus strand
Length: 43287 bases
Position: chr6:60184882-60228168
Accession: 16060
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000003745	TruB_N	PF01509.18	9.9e-50	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000004573	TRUB1-201	1234	-	ENSCPBP00000003745	289 (aa)	XP_005293916	UPI000388FD2F

Gene Model

Click here to download ENSCPBG00000003051's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000003051's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000003051	TRUB1	94	79.044	ENSG00000165832	TRUB1	78	79.044	Homo_sapiens
ENSCPBG00000003051	TRUB1	84	71.721	ENSAPOG00000020565	trub1	89	71.429	Acanthochromis_polyacanthus
ENSCPBG00000003051	TRUB1	94	78.832	ENSAMEG00000014931	TRUB1	78	78.832	Ailuropoda_melanoleuca
ENSCPBG00000003051	TRUB1	86	64.800	ENSACIG00000003060	trub1	83	64.800	Amphilophus_citrinellus
ENSCPBG00000003051	TRUB1	84	71.721	ENSAOCG00000017188	trub1	89	71.429	Amphiprion_ocellaris
ENSCPBG00000003051	TRUB1	84	71.020	ENSAPEG00000015209	trub1	89	71.020	Amphiprion_percula
ENSCPBG00000003051	TRUB1	86	71.084	ENSATEG00000023291	trub1	89	71.084	Anabas_testudineus
ENSCPBG00000003051	TRUB1	96	83.453	ENSAPLG00000006808	TRUB1	100	83.453	Anas_platyrhynchos
ENSCPBG00000003051	TRUB1	93	75.836	ENSACAG00000009282	TRUB1	97	75.836	Anolis_carolinensis
ENSCPBG00000003051	TRUB1	94	79.412	ENSANAG00000022870	TRUB1	77	79.412	Aotus_nancymaae
ENSCPBG00000003051	TRUB1	84	71.020	ENSACLG00000000823	trub1	88	71.020	Astatotilapia_calliptera
ENSCPBG00000003051	TRUB1	88	67.717	ENSAMXG00000015845	trub1	85	67.717	Astyanax_mexicanus
ENSCPBG00000003051	TRUB1	94	79.044	ENSBTAG00000012955	TRUB1	77	79.044	Bos_taurus
ENSCPBG00000003051	TRUB1	94	79.412	ENSCJAG00000047815	TRUB1	77	79.412	Callithrix_jacchus
ENSCPBG00000003051	TRUB1	94	80.147	ENSCAFG00000011688	TRUB1	78	80.147	Canis_familiaris
ENSCPBG00000003051	TRUB1	94	80.147	ENSCAFG00020013237	TRUB1	78	80.147	Canis_lupus_dingo
ENSCPBG00000003051	TRUB1	94	79.412	ENSCHIG00000020884	TRUB1	81	79.412	Capra_hircus
ENSCPBG00000003051	TRUB1	94	78.676	ENSTSYG00000000446	TRUB1	77	78.676	Carlito_syrichta
ENSCPBG00000003051	TRUB1	79	70.175	ENSCAPG00000017088	TRUB1	89	70.175	Cavia_aperea
ENSCPBG00000003051	TRUB1	64	77.005	ENSCPOG00000030129	-	73	77.005	Cavia_porcellus
ENSCPBG00000003051	TRUB1	63	77.717	ENSCPOG00000040236	-	75	77.717	Cavia_porcellus
ENSCPBG00000003051	TRUB1	94	79.412	ENSCCAG00000028842	TRUB1	77	79.412	Cebus_capucinus
ENSCPBG00000003051	TRUB1	94	79.044	ENSCATG00000033431	TRUB1	78	79.044	Cercocebus_atys
ENSCPBG00000003051	TRUB1	63	77.174	ENSCLAG00000008664	TRUB1	75	77.174	Chinchilla_lanigera
ENSCPBG00000003051	TRUB1	94	79.412	ENSCSAG00000004891	TRUB1	78	79.412	Chlorocebus_sabaeus
ENSCPBG00000003051	TRUB1	94	68.382	ENSCHOG00000011931	TRUB1	78	68.382	Choloepus_hoffmanni
ENSCPBG00000003051	TRUB1	94	79.412	ENSCANG00000029445	TRUB1	78	79.412	Colobus_angolensis_palliatus
ENSCPBG00000003051	TRUB1	91	67.293	ENSCGRG00001010322	-	73	67.883	Cricetulus_griseus_chok1gshd
ENSCPBG00000003051	TRUB1	79	76.754	ENSCGRG00001016772	-	80	74.583	Cricetulus_griseus_chok1gshd
ENSCPBG00000003051	TRUB1	91	75.379	ENSCGRG00000010806	Trub1	83	76.103	Cricetulus_griseus_crigri
ENSCPBG00000003051	TRUB1	84	66.939	ENSCSEG00000011261	trub1	79	66.939	Cynoglossus_semilaevis
ENSCPBG00000003051	TRUB1	84	71.020	ENSCVAG00000008791	trub1	75	71.020	Cyprinodon_variegatus
ENSCPBG00000003051	TRUB1	93	65.299	ENSDARG00000053805	trub1	92	65.299	Danio_rerio
ENSCPBG00000003051	TRUB1	96	76.703	ENSDNOG00000001069	TRUB1	80	76.703	Dasypus_novemcinctus
ENSCPBG00000003051	TRUB1	91	77.652	ENSDORG00000010431	Trub1	79	78.309	Dipodomys_ordii
ENSCPBG00000003051	TRUB1	72	76.224	ENSETEG00000009183	TRUB1	60	73.973	Echinops_telfairi
ENSCPBG00000003051	TRUB1	94	79.412	ENSEASG00005014739	TRUB1	78	79.412	Equus_asinus_asinus
ENSCPBG00000003051	TRUB1	94	79.412	ENSECAG00000007177	TRUB1	78	79.412	Equus_caballus
ENSCPBG00000003051	TRUB1	94	68.750	ENSEEUG00000013993	TRUB1	76	68.750	Erinaceus_europaeus
ENSCPBG00000003051	TRUB1	84	71.429	ENSELUG00000000502	trub1	86	71.429	Esox_lucius
ENSCPBG00000003051	TRUB1	94	80.147	ENSFCAG00000031927	TRUB1	78	80.147	Felis_catus
ENSCPBG00000003051	TRUB1	84	82.645	ENSFALG00000002232	TRUB1	93	82.645	Ficedula_albicollis
ENSCPBG00000003051	TRUB1	63	78.804	ENSFDAG00000008140	TRUB1	75	78.804	Fukomys_damarensis
ENSCPBG00000003051	TRUB1	84	70.204	ENSFHEG00000004016	trub1	84	70.204	Fundulus_heteroclitus
ENSCPBG00000003051	TRUB1	97	80.714	ENSGALG00000009091	TRUB1	99	80.714	Gallus_gallus
ENSCPBG00000003051	TRUB1	90	65.267	ENSGAFG00000009193	trub1	91	65.267	Gambusia_affinis
ENSCPBG00000003051	TRUB1	67	70.619	ENSGACG00000015387	trub1	95	70.619	Gasterosteus_aculeatus
ENSCPBG00000003051	TRUB1	100	95.862	ENSGAGG00000009758	TRUB1	78	95.971	Gopherus_agassizii
ENSCPBG00000003051	TRUB1	94	79.412	ENSGGOG00000004583	TRUB1	78	79.412	Gorilla_gorilla
ENSCPBG00000003051	TRUB1	84	71.020	ENSHBUG00000016787	trub1	88	71.020	Haplochromis_burtoni
ENSCPBG00000003051	TRUB1	94	74.818	ENSHGLG00000015314	TRUB1	79	74.818	Heterocephalus_glaber_female
ENSCPBG00000003051	TRUB1	63	77.717	ENSHGLG00100009183	TRUB1	78	77.717	Heterocephalus_glaber_male
ENSCPBG00000003051	TRUB1	84	71.020	ENSHCOG00000017877	trub1	89	71.020	Hippocampus_comes
ENSCPBG00000003051	TRUB1	90	68.077	ENSIPUG00000017559	trub1	92	68.077	Ictalurus_punctatus
ENSCPBG00000003051	TRUB1	96	78.339	ENSSTOG00000003641	TRUB1	83	78.339	Ictidomys_tridecemlineatus
ENSCPBG00000003051	TRUB1	93	77.491	ENSJJAG00000011800	Trub1	80	77.491	Jaculus_jaculus
ENSCPBG00000003051	TRUB1	86	69.261	ENSKMAG00000006232	trub1	92	69.261	Kryptolebias_marmoratus
ENSCPBG00000003051	TRUB1	94	65.328	ENSLBEG00000026722	trub1	96	65.328	Labrus_bergylta
ENSCPBG00000003051	TRUB1	97	75.352	ENSLACG00000014885	TRUB1	95	75.352	Latimeria_chalumnae
ENSCPBG00000003051	TRUB1	94	72.794	ENSLOCG00000012979	trub1	93	72.794	Lepisosteus_oculatus
ENSCPBG00000003051	TRUB1	90	78.544	ENSLAFG00000015452	TRUB1	80	74.737	Loxodonta_africana
ENSCPBG00000003051	TRUB1	94	79.412	ENSMFAG00000031767	TRUB1	78	79.412	Macaca_fascicularis
ENSCPBG00000003051	TRUB1	94	79.412	ENSMMUG00000001902	TRUB1	78	79.412	Macaca_mulatta
ENSCPBG00000003051	TRUB1	94	74.632	ENSMNEG00000044646	TRUB1	77	74.632	Macaca_nemestrina
ENSCPBG00000003051	TRUB1	94	79.412	ENSMLEG00000042655	TRUB1	78	79.412	Mandrillus_leucophaeus
ENSCPBG00000003051	TRUB1	84	71.020	ENSMZEG00005024095	trub1	88	71.020	Maylandia_zebra
ENSCPBG00000003051	TRUB1	96	79.137	ENSMGAG00000011135	TRUB1	96	79.137	Meleagris_gallopavo
ENSCPBG00000003051	TRUB1	91	72.727	ENSMAUG00000011101	Trub1	80	73.529	Mesocricetus_auratus
ENSCPBG00000003051	TRUB1	94	79.779	ENSMICG00000016324	TRUB1	78	79.779	Microcebus_murinus
ENSCPBG00000003051	TRUB1	91	75.379	ENSMOCG00000017759	Trub1	82	76.103	Microtus_ochrogaster
ENSCPBG00000003051	TRUB1	94	83.088	ENSMODG00000009676	TRUB1	78	80.986	Monodelphis_domestica
ENSCPBG00000003051	TRUB1	92	74.906	MGP_CAROLIEiJ_G0023100	Trub1	80	75.277	Mus_caroli
ENSCPBG00000003051	TRUB1	92	74.157	ENSMUSG00000025086	Trub1	80	74.539	Mus_musculus
ENSCPBG00000003051	TRUB1	93	74.908	MGP_PahariEiJ_G0014588	Trub1	80	74.908	Mus_pahari
ENSCPBG00000003051	TRUB1	92	74.157	MGP_SPRETEiJ_G0024021	Trub1	80	74.539	Mus_spretus
ENSCPBG00000003051	TRUB1	94	80.147	ENSMPUG00000003556	TRUB1	78	80.147	Mustela_putorius_furo
ENSCPBG00000003051	TRUB1	94	79.412	ENSMLUG00000017686	TRUB1	80	79.412	Myotis_lucifugus
ENSCPBG00000003051	TRUB1	94	77.574	ENSNGAG00000018682	Trub1	78	77.574	Nannospalax_galili
ENSCPBG00000003051	TRUB1	87	70.120	ENSNBRG00000023393	trub1	90	70.120	Neolamprologus_brichardi
ENSCPBG00000003051	TRUB1	94	79.487	ENSNLEG00000016345	TRUB1	78	79.487	Nomascus_leucogenys
ENSCPBG00000003051	TRUB1	69	84.080	ENSMEUG00000006603	TRUB1	79	81.221	Notamacropus_eugenii
ENSCPBG00000003051	TRUB1	94	75.735	ENSOPRG00000009371	TRUB1	79	75.735	Ochotona_princeps
ENSCPBG00000003051	TRUB1	94	74.265	ENSODEG00000010854	TRUB1	78	74.265	Octodon_degus
ENSCPBG00000003051	TRUB1	84	70.612	ENSONIG00000007249	trub1	89	70.612	Oreochromis_niloticus
ENSCPBG00000003051	TRUB1	94	79.197	ENSOANG00000001556	TRUB1	97	75.510	Ornithorhynchus_anatinus
ENSCPBG00000003051	TRUB1	94	77.574	ENSOCUG00000009456	TRUB1	79	77.574	Oryctolagus_cuniculus
ENSCPBG00000003051	TRUB1	83	72.199	ENSORLG00000029719	trub1	86	72.199	Oryzias_latipes
ENSCPBG00000003051	TRUB1	83	71.784	ENSORLG00020016767	trub1	85	71.784	Oryzias_latipes_hni
ENSCPBG00000003051	TRUB1	83	71.784	ENSORLG00015014728	trub1	86	71.784	Oryzias_latipes_hsok
ENSCPBG00000003051	TRUB1	88	68.504	ENSOMEG00000014556	trub1	89	68.504	Oryzias_melastigma
ENSCPBG00000003051	TRUB1	94	79.412	ENSOGAG00000015895	TRUB1	78	79.412	Otolemur_garnettii
ENSCPBG00000003051	TRUB1	94	77.061	ENSOARG00000015591	TRUB1	79	77.061	Ovis_aries
ENSCPBG00000003051	TRUB1	94	79.412	ENSPPAG00000043645	TRUB1	78	79.412	Pan_paniscus
ENSCPBG00000003051	TRUB1	94	79.412	ENSPPRG00000007096	TRUB1	78	79.412	Panthera_pardus
ENSCPBG00000003051	TRUB1	94	79.779	ENSPTIG00000006378	TRUB1	78	79.779	Panthera_tigris_altaica
ENSCPBG00000003051	TRUB1	94	79.412	ENSPTRG00000002964	TRUB1	78	79.412	Pan_troglodytes
ENSCPBG00000003051	TRUB1	94	79.412	ENSPANG00000020712	TRUB1	78	79.412	Papio_anubis
ENSCPBG00000003051	TRUB1	58	72.455	ENSPKIG00000003852	trub1	72	72.455	Paramormyrops_kingsleyae
ENSCPBG00000003051	TRUB1	100	90.000	ENSPSIG00000012877	TRUB1	100	90.000	Pelodiscus_sinensis
ENSCPBG00000003051	TRUB1	94	62.500	ENSPMGG00000000075	trub1	95	62.500	Periophthalmus_magnuspinnatus
ENSCPBG00000003051	TRUB1	94	76.838	ENSPEMG00000011156	Trub1	80	76.838	Peromyscus_maniculatus_bairdii
ENSCPBG00000003051	TRUB1	94	82.353	ENSPCIG00000009729	TRUB1	77	80.634	Phascolarctos_cinereus
ENSCPBG00000003051	TRUB1	84	69.796	ENSPFOG00000009950	trub1	90	69.796	Poecilia_formosa
ENSCPBG00000003051	TRUB1	90	67.176	ENSPLAG00000013855	trub1	91	67.176	Poecilia_latipinna
ENSCPBG00000003051	TRUB1	90	67.176	ENSPMEG00000009064	trub1	94	67.176	Poecilia_mexicana
ENSCPBG00000003051	TRUB1	84	70.204	ENSPREG00000003343	trub1	88	70.204	Poecilia_reticulata
ENSCPBG00000003051	TRUB1	94	79.044	ENSPPYG00000002676	TRUB1	78	79.044	Pongo_abelii
ENSCPBG00000003051	TRUB1	97	68.551	ENSPCAG00000008427	TRUB1	81	67.361	Procavia_capensis
ENSCPBG00000003051	TRUB1	94	74.632	ENSPCOG00000024360	TRUB1	77	74.632	Propithecus_coquereli
ENSCPBG00000003051	TRUB1	70	81.773	ENSPVAG00000007575	TRUB1	77	81.773	Pteropus_vampyrus
ENSCPBG00000003051	TRUB1	84	71.020	ENSPNYG00000018614	trub1	88	71.020	Pundamilia_nyererei
ENSCPBG00000003051	TRUB1	84	61.728	ENSPNAG00000006881	trub1	78	61.728	Pygocentrus_nattereri
ENSCPBG00000003051	TRUB1	93	73.801	ENSRNOG00000017321	Trub1	79	73.801	Rattus_norvegicus
ENSCPBG00000003051	TRUB1	94	70.956	ENSRBIG00000033423	TRUB1	76	70.956	Rhinopithecus_bieti
ENSCPBG00000003051	TRUB1	94	79.412	ENSRROG00000033902	TRUB1	78	79.412	Rhinopithecus_roxellana
ENSCPBG00000003051	TRUB1	94	79.412	ENSSBOG00000024237	TRUB1	77	79.412	Saimiri_boliviensis_boliviensis
ENSCPBG00000003051	TRUB1	80	83.621	ENSSHAG00000009346	TRUB1	78	83.621	Sarcophilus_harrisii
ENSCPBG00000003051	TRUB1	84	74.486	ENSSFOG00015022124	trub1	83	74.486	Scleropages_formosus
ENSCPBG00000003051	TRUB1	84	71.020	ENSSMAG00000001020	trub1	87	71.020	Scophthalmus_maximus
ENSCPBG00000003051	TRUB1	82	70.711	ENSSDUG00000016414	trub1	90	69.200	Seriola_dumerili
ENSCPBG00000003051	TRUB1	82	71.130	ENSSLDG00000015486	trub1	90	69.600	Seriola_lalandi_dorsalis
ENSCPBG00000003051	TRUB1	100	83.448	ENSSPUG00000001642	TRUB1	100	83.448	Sphenodon_punctatus
ENSCPBG00000003051	TRUB1	84	72.245	ENSSPAG00000001217	trub1	88	72.245	Stegastes_partitus
ENSCPBG00000003051	TRUB1	94	79.044	ENSSSCG00000010653	TRUB1	79	78.889	Sus_scrofa
ENSCPBG00000003051	TRUB1	93	82.900	ENSTGUG00000010971	TRUB1	99	80.935	Taeniopygia_guttata
ENSCPBG00000003051	TRUB1	79	65.789	ENSTBEG00000002880	TRUB1	90	65.789	Tupaia_belangeri
ENSCPBG00000003051	TRUB1	70	80.296	ENSTTRG00000005767	TRUB1	77	80.296	Tursiops_truncatus
ENSCPBG00000003051	TRUB1	94	80.147	ENSUAMG00000024876	TRUB1	78	80.147	Ursus_americanus
ENSCPBG00000003051	TRUB1	94	79.779	ENSUMAG00000002411	TRUB1	81	79.779	Ursus_maritimus
ENSCPBG00000003051	TRUB1	94	81.250	ENSVPAG00000005507	TRUB1	78	81.250	Vicugna_pacos
ENSCPBG00000003051	TRUB1	94	80.147	ENSVVUG00000010085	TRUB1	66	80.147	Vulpes_vulpes
ENSCPBG00000003051	TRUB1	96	67.391	ENSXETG00000023828	trub1	100	67.391	Xenopus_tropicalis
ENSCPBG00000003051	TRUB1	84	68.443	ENSXCOG00000017847	trub1	86	68.443	Xiphophorus_couchianus
ENSCPBG00000003051	TRUB1	90	66.412	ENSXMAG00000014701	trub1	94	66.412	Xiphophorus_maculatus