EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCPBG00000003100 (Gene tree)
Gene ID: 101941446
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Minus strand
Length: 26057 bases
Position: chrKK083207.1:636018-662074
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000003809	PRP4	PF08799.11	3e-13	1	1
ENSCPBP00000003802	PRP4	PF08799.11	3.1e-13	1	1
ENSCPBP00000003809	Prp18	PF02840.15	3.8e-62	1	1
ENSCPBP00000003802	Prp18	PF02840.15	4.2e-62	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000004652	-	2887	-	ENSCPBP00000003809	356 (aa)	XP_008173593	UPI000CE6590A
ENSCPBT00000004643	-	2914	-	ENSCPBP00000003802	365 (aa)	XP_008173594	UPI000CE65AC0

Gene Model

Click here to download ENSCPBG00000003100's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000003100's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000003100	-	100	89.888	ENSG00000165630	PRPF18	100	89.326	Homo_sapiens
ENSCPBG00000003100	-	100	82.022	ENSAPOG00000024177	prpf18	100	81.180	Acanthochromis_polyacanthus
ENSCPBG00000003100	-	100	89.326	ENSAMEG00000013591	-	100	88.764	Ailuropoda_melanoleuca
ENSCPBG00000003100	-	100	81.461	ENSACIG00000001186	prpf18	100	80.618	Amphilophus_citrinellus
ENSCPBG00000003100	-	98	81.662	ENSAOCG00000006572	prpf18	94	79.494	Amphiprion_ocellaris
ENSCPBG00000003100	-	100	82.022	ENSAPEG00000004564	prpf18	100	81.180	Amphiprion_percula
ENSCPBG00000003100	-	100	80.618	ENSATEG00000000303	prpf18	100	79.775	Anabas_testudineus
ENSCPBG00000003100	-	99	90.113	ENSAPLG00000003387	-	99	89.548	Anas_platyrhynchos
ENSCPBG00000003100	-	100	89.665	ENSACAG00000000818	-	100	88.283	Anolis_carolinensis
ENSCPBG00000003100	-	100	89.607	ENSANAG00000037445	-	100	89.045	Aotus_nancymaae
ENSCPBG00000003100	-	100	81.461	ENSACLG00000026296	prpf18	100	80.618	Astatotilapia_calliptera
ENSCPBG00000003100	-	100	81.644	ENSAMXG00000012848	prpf18	100	81.096	Astyanax_mexicanus
ENSCPBG00000003100	-	100	89.045	ENSBTAG00000017244	PRPF18	100	89.045	Bos_taurus
ENSCPBG00000003100	-	98	37.534	WBGene00009320	F32B6.3	97	36.702	Caenorhabditis_elegans
ENSCPBG00000003100	-	100	89.607	ENSCJAG00000009432	-	100	89.045	Callithrix_jacchus
ENSCPBG00000003100	-	100	89.326	ENSCAFG00000004735	-	100	88.764	Canis_familiaris
ENSCPBG00000003100	-	100	89.326	ENSCAFG00020007712	-	100	88.764	Canis_lupus_dingo
ENSCPBG00000003100	-	100	89.045	ENSCHIG00000000499	-	100	89.045	Capra_hircus
ENSCPBG00000003100	-	100	89.045	ENSTSYG00000003517	-	100	88.483	Carlito_syrichta
ENSCPBG00000003100	-	100	89.888	ENSCPOG00000021069	-	100	89.326	Cavia_porcellus
ENSCPBG00000003100	-	100	89.607	ENSCCAG00000036822	-	100	89.045	Cebus_capucinus
ENSCPBG00000003100	-	100	79.494	ENSCATG00000016633	-	100	78.933	Cercocebus_atys
ENSCPBG00000003100	-	100	89.326	ENSCLAG00000011770	-	100	88.764	Chinchilla_lanigera
ENSCPBG00000003100	-	100	89.589	ENSCSAG00000013109	-	100	89.041	Chlorocebus_sabaeus
ENSCPBG00000003100	-	99	54.469	ENSCING00000020481	-	97	51.676	Ciona_intestinalis
ENSCPBG00000003100	-	99	53.482	ENSCSAVG00000010546	-	99	52.500	Ciona_savignyi
ENSCPBG00000003100	-	100	89.607	ENSCANG00000034900	-	100	89.045	Colobus_angolensis_palliatus
ENSCPBG00000003100	-	100	89.888	ENSCGRG00001023665	Prpf18	100	89.326	Cricetulus_griseus_chok1gshd
ENSCPBG00000003100	-	100	89.888	ENSCGRG00000014690	Prpf18	100	89.326	Cricetulus_griseus_crigri
ENSCPBG00000003100	-	100	79.213	ENSCSEG00000005536	prpf18	99	78.933	Cynoglossus_semilaevis
ENSCPBG00000003100	-	100	80.899	ENSCVAG00000012401	prpf18	100	80.056	Cyprinodon_variegatus
ENSCPBG00000003100	-	100	82.022	ENSDARG00000058306	prpf18	100	81.461	Danio_rerio
ENSCPBG00000003100	-	100	89.607	ENSDNOG00000035607	-	100	89.045	Dasypus_novemcinctus
ENSCPBG00000003100	-	100	89.045	ENSDORG00000000858	Prpf18	100	88.483	Dipodomys_ordii
ENSCPBG00000003100	-	99	50.142	FBgn0027784	Prp18	98	49.292	Drosophila_melanogaster
ENSCPBG00000003100	-	100	79.494	ENSETEG00000015060	-	100	78.933	Echinops_telfairi
ENSCPBG00000003100	-	100	65.651	ENSEBUG00000016502	prpf18	99	64.444	Eptatretus_burgeri
ENSCPBG00000003100	-	100	89.607	ENSEASG00005019373	-	100	89.045	Equus_asinus_asinus
ENSCPBG00000003100	-	100	89.607	ENSECAG00000006997	PRPF18	100	89.045	Equus_caballus
ENSCPBG00000003100	-	93	55.758	ENSEEUG00000001171	-	100	55.152	Erinaceus_europaeus
ENSCPBG00000003100	-	100	79.552	ENSELUG00000022190	prpf18	100	78.992	Esox_lucius
ENSCPBG00000003100	-	100	89.326	ENSFCAG00000004436	-	100	88.764	Felis_catus
ENSCPBG00000003100	-	93	90.560	ENSFALG00000001912	-	97	89.971	Ficedula_albicollis
ENSCPBG00000003100	-	94	91.892	ENSFDAG00000014026	-	99	91.291	Fukomys_damarensis
ENSCPBG00000003100	-	99	58.774	ENSFDAG00000010713	-	97	58.217	Fukomys_damarensis
ENSCPBG00000003100	-	81	83.972	ENSFHEG00000020125	prpf18	98	83.274	Fundulus_heteroclitus
ENSCPBG00000003100	-	99	76.620	ENSGMOG00000012210	prpf18	99	76.056	Gadus_morhua
ENSCPBG00000003100	-	100	91.233	ENSGALG00000043593	-	100	90.685	Gallus_gallus
ENSCPBG00000003100	-	100	80.056	ENSGAFG00000006034	prpf18	100	79.213	Gambusia_affinis
ENSCPBG00000003100	-	100	77.809	ENSGACG00000012232	prpf18	100	77.247	Gasterosteus_aculeatus
ENSCPBG00000003100	-	100	95.068	ENSGAGG00000016878	-	100	95.068	Gopherus_agassizii
ENSCPBG00000003100	-	93	89.091	ENSGGOG00000025188	-	96	88.485	Gorilla_gorilla
ENSCPBG00000003100	-	100	81.461	ENSHBUG00000010264	prpf18	100	80.618	Haplochromis_burtoni
ENSCPBG00000003100	-	100	89.326	ENSHGLG00000018534	PRPF18	100	88.764	Heterocephalus_glaber_female
ENSCPBG00000003100	-	94	91.592	ENSHGLG00100012161	-	98	90.991	Heterocephalus_glaber_male
ENSCPBG00000003100	-	100	80.337	ENSHCOG00000015987	prpf18	100	79.775	Hippocampus_comes
ENSCPBG00000003100	-	100	79.564	ENSIPUG00000007432	prpf18	100	79.564	Ictalurus_punctatus
ENSCPBG00000003100	-	100	89.326	ENSSTOG00000008735	-	100	88.764	Ictidomys_tridecemlineatus
ENSCPBG00000003100	-	100	89.888	ENSJJAG00000024041	-	100	89.326	Jaculus_jaculus
ENSCPBG00000003100	-	100	65.826	ENSJJAG00000015191	-	100	65.546	Jaculus_jaculus
ENSCPBG00000003100	-	100	79.494	ENSKMAG00000012124	prpf18	100	78.652	Kryptolebias_marmoratus
ENSCPBG00000003100	-	97	78.571	ENSLBEG00000028466	prpf18	99	77.714	Labrus_bergylta
ENSCPBG00000003100	-	100	85.112	ENSLACG00000009885	prpf18	100	84.551	Latimeria_chalumnae
ENSCPBG00000003100	-	100	87.921	ENSLOCG00000016736	prpf18	100	87.360	Lepisosteus_oculatus
ENSCPBG00000003100	-	100	89.888	ENSLAFG00000007753	-	100	89.326	Loxodonta_africana
ENSCPBG00000003100	-	100	89.888	ENSMFAG00000000540	-	100	89.326	Macaca_fascicularis
ENSCPBG00000003100	-	100	89.888	ENSMMUG00000015071	PRPF18	93	98.013	Macaca_mulatta
ENSCPBG00000003100	-	100	89.888	ENSMNEG00000024679	-	100	89.326	Macaca_nemestrina
ENSCPBG00000003100	-	100	75.281	ENSMLEG00000031715	-	100	74.719	Mandrillus_leucophaeus
ENSCPBG00000003100	-	100	80.337	ENSMAMG00000006610	prpf18	100	79.494	Mastacembelus_armatus
ENSCPBG00000003100	-	100	81.461	ENSMZEG00005019392	prpf18	100	80.618	Maylandia_zebra
ENSCPBG00000003100	-	100	91.011	ENSMGAG00000005023	-	100	90.449	Meleagris_gallopavo
ENSCPBG00000003100	-	100	89.607	ENSMICG00000006572	-	100	89.045	Microcebus_murinus
ENSCPBG00000003100	-	100	89.888	ENSMOCG00000021468	Prpf18	100	89.326	Microtus_ochrogaster
ENSCPBG00000003100	-	100	81.461	ENSMMOG00000013012	prpf18	100	80.618	Mola_mola
ENSCPBG00000003100	-	100	78.933	ENSMODG00000024043	-	100	78.371	Monodelphis_domestica
ENSCPBG00000003100	-	96	87.216	ENSMODG00000016902	-	92	86.648	Monodelphis_domestica
ENSCPBG00000003100	-	100	74.652	ENSMALG00000005486	prpf18	100	74.373	Monopterus_albus
ENSCPBG00000003100	-	100	89.326	MGP_CAROLIEiJ_G0023143	Prpf18	100	98.630	Mus_caroli
ENSCPBG00000003100	-	100	89.045	ENSMUSG00000039449	Prpf18	100	98.630	Mus_musculus
ENSCPBG00000003100	-	100	89.607	MGP_PahariEiJ_G0019203	Prpf18	100	98.630	Mus_pahari
ENSCPBG00000003100	-	100	88.764	MGP_SPRETEiJ_G0024061	Prpf18	100	98.630	Mus_spretus
ENSCPBG00000003100	-	100	89.607	ENSMPUG00000000938	-	100	89.045	Mustela_putorius_furo
ENSCPBG00000003100	-	100	89.045	ENSMLUG00000009200	-	100	89.045	Myotis_lucifugus
ENSCPBG00000003100	-	100	89.326	ENSNGAG00000012500	-	100	88.764	Nannospalax_galili
ENSCPBG00000003100	-	69	84.836	ENSNGAG00000023550	-	82	84.426	Nannospalax_galili
ENSCPBG00000003100	-	100	81.461	ENSNBRG00000001778	prpf18	100	80.618	Neolamprologus_brichardi
ENSCPBG00000003100	-	100	89.888	ENSNLEG00000012186	-	100	89.326	Nomascus_leucogenys
ENSCPBG00000003100	-	100	62.640	ENSMEUG00000005032	-	100	62.079	Notamacropus_eugenii
ENSCPBG00000003100	-	78	70.968	ENSOPRG00000002153	-	100	70.251	Ochotona_princeps
ENSCPBG00000003100	-	100	89.045	ENSODEG00000003770	-	100	88.483	Octodon_degus
ENSCPBG00000003100	-	98	80.516	ENSONIG00000014854	prpf18	96	79.656	Oreochromis_niloticus
ENSCPBG00000003100	-	100	89.045	ENSOANG00000015404	-	100	88.483	Ornithorhynchus_anatinus
ENSCPBG00000003100	-	100	89.607	ENSOCUG00000027756	-	96	89.736	Oryctolagus_cuniculus
ENSCPBG00000003100	-	100	78.846	ENSORLG00000010293	prpf18	100	78.297	Oryzias_latipes
ENSCPBG00000003100	-	100	80.056	ENSORLG00020001530	prpf18	100	79.213	Oryzias_latipes_hni
ENSCPBG00000003100	-	100	79.775	ENSORLG00015013705	prpf18	100	78.933	Oryzias_latipes_hsok
ENSCPBG00000003100	-	100	81.742	ENSOMEG00000009167	prpf18	100	80.899	Oryzias_melastigma
ENSCPBG00000003100	-	100	89.045	ENSOGAG00000007294	-	100	88.483	Otolemur_garnettii
ENSCPBG00000003100	-	100	88.767	ENSOARG00000006243	-	100	88.767	Ovis_aries
ENSCPBG00000003100	-	100	89.888	ENSPPAG00000041959	-	100	89.326	Pan_paniscus
ENSCPBG00000003100	-	100	89.326	ENSPPRG00000000107	-	100	88.764	Panthera_pardus
ENSCPBG00000003100	-	100	89.607	ENSPTIG00000021094	-	100	89.045	Panthera_tigris_altaica
ENSCPBG00000003100	-	100	89.888	ENSPTRG00000002306	PRPF18	100	89.326	Pan_troglodytes
ENSCPBG00000003100	-	100	89.607	ENSPANG00000023346	-	100	89.045	Papio_anubis
ENSCPBG00000003100	-	87	98.113	ENSPKIG00000014128	prpf18	96	79.726	Paramormyrops_kingsleyae
ENSCPBG00000003100	-	100	93.258	ENSPSIG00000016064	-	100	93.258	Pelodiscus_sinensis
ENSCPBG00000003100	-	100	75.843	ENSPMGG00000016486	prpf18	100	75.281	Periophthalmus_magnuspinnatus
ENSCPBG00000003100	-	100	89.607	ENSPEMG00000013704	Prpf18	100	89.607	Peromyscus_maniculatus_bairdii
ENSCPBG00000003100	-	100	72.222	ENSPMAG00000000204	prpf18	100	71.944	Petromyzon_marinus
ENSCPBG00000003100	-	93	90.000	ENSPCIG00000012963	-	99	89.394	Phascolarctos_cinereus
ENSCPBG00000003100	-	100	78.846	ENSPFOG00000017611	prpf18	100	77.808	Poecilia_formosa
ENSCPBG00000003100	-	100	80.056	ENSPLAG00000000369	prpf18	100	79.213	Poecilia_latipinna
ENSCPBG00000003100	-	100	80.056	ENSPMEG00000005183	prpf18	100	79.213	Poecilia_mexicana
ENSCPBG00000003100	-	100	79.494	ENSPREG00000015232	prpf18	100	78.652	Poecilia_reticulata
ENSCPBG00000003100	-	100	89.607	ENSPPYG00000002101	PRPF18	100	89.045	Pongo_abelii
ENSCPBG00000003100	-	100	72.753	ENSPCAG00000010833	-	100	72.191	Procavia_capensis
ENSCPBG00000003100	-	100	83.427	ENSPCOG00000013057	-	100	82.865	Propithecus_coquereli
ENSCPBG00000003100	-	83	76.510	ENSPVAG00000002947	-	86	76.510	Pteropus_vampyrus
ENSCPBG00000003100	-	100	81.180	ENSPNYG00000003554	prpf18	100	80.337	Pundamilia_nyererei
ENSCPBG00000003100	-	100	81.918	ENSPNAG00000023151	prpf18	100	81.370	Pygocentrus_nattereri
ENSCPBG00000003100	-	100	89.326	ENSRNOG00000018396	Prpf18	100	88.764	Rattus_norvegicus
ENSCPBG00000003100	-	100	89.326	ENSRBIG00000028028	-	100	88.764	Rhinopithecus_bieti
ENSCPBG00000003100	-	100	89.607	ENSRROG00000040695	-	100	89.045	Rhinopithecus_roxellana
ENSCPBG00000003100	-	100	89.607	ENSSBOG00000034482	-	100	89.045	Saimiri_boliviensis_boliviensis
ENSCPBG00000003100	-	100	73.034	ENSSHAG00000009669	-	100	73.034	Sarcophilus_harrisii
ENSCPBG00000003100	-	100	90.449	ENSSHAG00000016463	-	100	89.888	Sarcophilus_harrisii
ENSCPBG00000003100	-	78	42.294	ENSSFOG00015021154	-	89	45.344	Scleropages_formosus
ENSCPBG00000003100	-	98	80.223	ENSSFOG00015022118	prpf18	100	74.238	Scleropages_formosus
ENSCPBG00000003100	-	100	78.933	ENSSMAG00000005308	prpf18	100	78.090	Scophthalmus_maximus
ENSCPBG00000003100	-	100	81.180	ENSSDUG00000015428	prpf18	100	80.337	Seriola_dumerili
ENSCPBG00000003100	-	100	81.180	ENSSLDG00000023989	prpf18	100	80.337	Seriola_lalandi_dorsalis
ENSCPBG00000003100	-	82	80.992	ENSSARG00000005307	-	86	80.992	Sorex_araneus
ENSCPBG00000003100	-	100	91.011	ENSSPUG00000002619	-	100	90.449	Sphenodon_punctatus
ENSCPBG00000003100	-	100	81.180	ENSSPAG00000019502	prpf18	100	80.337	Stegastes_partitus
ENSCPBG00000003100	-	100	89.326	ENSSSCG00000026354	-	100	88.764	Sus_scrofa
ENSCPBG00000003100	-	100	91.011	ENSTGUG00000002286	-	100	90.449	Taeniopygia_guttata
ENSCPBG00000003100	-	100	78.371	ENSTRUG00000011278	prpf18	100	77.528	Takifugu_rubripes
ENSCPBG00000003100	-	100	80.618	ENSTNIG00000000911	prpf18	100	79.775	Tetraodon_nigroviridis
ENSCPBG00000003100	-	81	100.000	ENSTBEG00000013011	-	79	100.000	Tupaia_belangeri
ENSCPBG00000003100	-	100	90.169	ENSTTRG00000011117	PRPF18	100	89.607	Tursiops_truncatus
ENSCPBG00000003100	-	91	91.692	ENSUAMG00000001815	-	93	91.077	Ursus_americanus
ENSCPBG00000003100	-	100	84.831	ENSUMAG00000012329	-	100	84.270	Ursus_maritimus
ENSCPBG00000003100	-	100	83.427	ENSVPAG00000011486	-	100	83.427	Vicugna_pacos
ENSCPBG00000003100	-	100	89.326	ENSVVUG00000005453	-	100	88.764	Vulpes_vulpes
ENSCPBG00000003100	-	100	79.109	ENSXETG00000024057	prpf18	100	78.552	Xenopus_tropicalis
ENSCPBG00000003100	-	100	79.888	ENSXCOG00000020414	prpf18	100	79.050	Xiphophorus_couchianus
ENSCPBG00000003100	-	100	80.337	ENSXMAG00000004713	prpf18	91	79.494	Xiphophorus_maculatus