EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPBG00000003204 (Gene tree)
Gene ID: 101942821
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Minus strand
Length: 107476 bases
Position: chrKK082925.1:5189466-5296941
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000003948	ResIII	PF04851.15	6.9e-11	1	1
ENSCPBP00000003937	ResIII	PF04851.15	8.1e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000004818	-	3599	-	ENSCPBP00000003948	855 (aa)	-	-
ENSCPBT00000004805	-	2959	-	ENSCPBP00000003937	920 (aa)	XP_023961017	UPI00038918A6

Gene Model

Click here to download ENSCPBG00000003204's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03440	Homologous recombination	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000003204's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPBG00000003204	-	60	32.911	ENSCPBG00000013203	SMARCAD1	50	33.088
ENSCPBG00000003204	-	74	42.302	ENSCPBG00000005675	RAD54L	88	42.158
ENSCPBG00000003204	-	58	32.207	ENSCPBG00000002600	CHD1L	51	32.207
ENSCPBG00000003204	-	59	33.333	ENSCPBG00000018049	-	53	33.140
ENSCPBG00000003204	-	62	33.217	ENSCPBG00000011965	ERCC6L	86	33.213

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000003204	-	99	71.378	ENSG00000197275	RAD54B	100	70.933	Homo_sapiens
ENSCPBG00000003204	-	79	76.236	ENSG00000265817	FSBP	100	76.236	Homo_sapiens
ENSCPBG00000003204	-	99	69.858	ENSAMEG00000005834	-	99	69.499	Ailuropoda_melanoleuca
ENSCPBG00000003204	-	86	62.563	ENSACIG00000013005	rad54b	89	62.563	Amphilophus_citrinellus
ENSCPBG00000003204	-	98	59.507	ENSAOCG00000008523	rad54b	99	57.663	Amphiprion_ocellaris
ENSCPBG00000003204	-	98	58.442	ENSAPEG00000001673	rad54b	99	56.695	Amphiprion_percula
ENSCPBG00000003204	-	98	58.169	ENSATEG00000001527	rad54b	99	56.457	Anabas_testudineus
ENSCPBG00000003204	-	99	80.683	ENSAPLG00000014366	-	99	80.305	Anas_platyrhynchos
ENSCPBG00000003204	-	85	80.966	ENSACAG00000003671	-	98	79.167	Anolis_carolinensis
ENSCPBG00000003204	-	71	76.271	ENSANAG00000019528	-	100	76.271	Aotus_nancymaae
ENSCPBG00000003204	-	86	62.893	ENSACLG00000007826	rad54b	92	62.893	Astatotilapia_calliptera
ENSCPBG00000003204	-	83	63.523	ENSAMXG00000039985	rad54b	94	60.652	Astyanax_mexicanus
ENSCPBG00000003204	-	99	69.740	ENSBTAG00000000632	RAD54B	99	69.239	Bos_taurus
ENSCPBG00000003204	-	84	35.445	WBGene00013792	Y116A8C.13	83	35.445	Caenorhabditis_elegans
ENSCPBG00000003204	-	99	70.843	ENSCJAG00000000080	-	100	75.962	Callithrix_jacchus
ENSCPBG00000003204	-	99	69.022	ENSCAFG00000009179	RAD54B	99	68.621	Canis_familiaris
ENSCPBG00000003204	-	99	69.022	ENSCAFG00020012084	-	99	68.730	Canis_lupus_dingo
ENSCPBG00000003204	-	99	69.514	ENSCHIG00000008230	-	99	69.029	Capra_hircus
ENSCPBG00000003204	-	99	70.922	ENSTSYG00000013234	-	99	70.338	Carlito_syrichta
ENSCPBG00000003204	-	99	69.412	ENSCPOG00000011643	-	99	68.988	Cavia_porcellus
ENSCPBG00000003204	-	99	70.726	ENSCCAG00000011754	-	100	75.824	Cebus_capucinus
ENSCPBG00000003204	-	99	70.607	ENSCATG00000030661	-	100	75.549	Cercocebus_atys
ENSCPBG00000003204	-	99	69.637	ENSCLAG00000010476	-	100	69.156	Chinchilla_lanigera
ENSCPBG00000003204	-	99	70.575	ENSCSAG00000012712	-	100	70.575	Chlorocebus_sabaeus
ENSCPBG00000003204	-	99	70.511	ENSCANG00000017939	-	100	75.687	Colobus_angolensis_palliatus
ENSCPBG00000003204	-	99	66.902	ENSCGRG00001020184	Rad54b	99	66.303	Cricetulus_griseus_chok1gshd
ENSCPBG00000003204	-	99	66.196	ENSCGRG00000016752	Rad54b	99	65.649	Cricetulus_griseus_crigri
ENSCPBG00000003204	-	91	63.085	ENSCSEG00000001601	rad54b	99	61.392	Cynoglossus_semilaevis
ENSCPBG00000003204	-	98	60.613	ENSCVAG00000009200	rad54b	99	58.747	Cyprinodon_variegatus
ENSCPBG00000003204	-	98	57.307	ENSDARG00000092134	rad54b	99	62.366	Danio_rerio
ENSCPBG00000003204	-	99	71.090	ENSDNOG00000015535	-	99	70.326	Dasypus_novemcinctus
ENSCPBG00000003204	-	99	68.632	ENSDORG00000002492	Rad54b	99	68.266	Dipodomys_ordii
ENSCPBG00000003204	-	93	69.762	ENSETEG00000010605	-	100	69.762	Echinops_telfairi
ENSCPBG00000003204	-	98	48.786	ENSEBUG00000009104	rad54b	98	47.184	Eptatretus_burgeri
ENSCPBG00000003204	-	96	68.546	ENSEASG00005004021	-	99	68.546	Equus_asinus_asinus
ENSCPBG00000003204	-	99	69.149	ENSECAG00000021949	-	99	68.478	Equus_caballus
ENSCPBG00000003204	-	76	82.222	ENSEEUG00000008056	-	79	75.472	Erinaceus_europaeus
ENSCPBG00000003204	-	98	56.349	ENSELUG00000009287	rad54b	99	54.735	Esox_lucius
ENSCPBG00000003204	-	99	69.729	ENSFCAG00000015513	-	99	75.344	Felis_catus
ENSCPBG00000003204	-	99	79.363	ENSFALG00000005467	-	99	79.085	Ficedula_albicollis
ENSCPBG00000003204	-	99	70.210	ENSFDAG00000020541	-	100	69.730	Fukomys_damarensis
ENSCPBG00000003204	-	86	61.202	ENSFHEG00000014382	rad54b	87	61.202	Fundulus_heteroclitus
ENSCPBG00000003204	-	83	63.534	ENSGMOG00000014774	rad54b	98	60.728	Gadus_morhua
ENSCPBG00000003204	-	99	78.681	ENSGALG00000043597	RAD54B	99	78.346	Gallus_gallus
ENSCPBG00000003204	-	98	59.698	ENSGAFG00000007901	rad54b	99	57.692	Gambusia_affinis
ENSCPBG00000003204	-	98	58.789	ENSGACG00000009128	rad54b	100	57.173	Gasterosteus_aculeatus
ENSCPBG00000003204	-	99	96.192	ENSGAGG00000018747	-	99	96.192	Gopherus_agassizii
ENSCPBG00000003204	-	99	70.979	ENSGGOG00000023516	-	99	70.978	Gorilla_gorilla
ENSCPBG00000003204	-	98	58.121	ENSHBUG00000016017	rad54b	99	56.854	Haplochromis_burtoni
ENSCPBG00000003204	-	99	68.692	ENSHGLG00000008263	RAD54B	99	68.319	Heterocephalus_glaber_female
ENSCPBG00000003204	-	99	67.865	ENSHGLG00100008108	-	99	67.556	Heterocephalus_glaber_male
ENSCPBG00000003204	-	99	56.643	ENSHCOG00000004764	rad54b	98	58.765	Hippocampus_comes
ENSCPBG00000003204	-	98	56.766	ENSIPUG00000018531	rad54b	99	55.333	Ictalurus_punctatus
ENSCPBG00000003204	-	99	68.514	ENSSTOG00000010791	-	99	67.500	Ictidomys_tridecemlineatus
ENSCPBG00000003204	-	99	68.845	ENSJJAG00000010314	Rad54b	99	68.547	Jaculus_jaculus
ENSCPBG00000003204	-	86	63.038	ENSKMAG00000004744	rad54b	94	59.781	Kryptolebias_marmoratus
ENSCPBG00000003204	-	82	75.385	ENSLACG00000000859	-	100	72.727	Latimeria_chalumnae
ENSCPBG00000003204	-	98	62.950	ENSLOCG00000010100	rad54b	94	66.875	Lepisosteus_oculatus
ENSCPBG00000003204	-	88	72.525	ENSLAFG00000015315	-	99	72.525	Loxodonta_africana
ENSCPBG00000003204	-	99	70.620	ENSMFAG00000031629	-	100	75.549	Macaca_fascicularis
ENSCPBG00000003204	-	99	70.620	ENSMMUG00000005659	-	100	70.620	Macaca_mulatta
ENSCPBG00000003204	-	99	71.056	ENSMNEG00000016408	-	100	70.403	Macaca_nemestrina
ENSCPBG00000003204	-	99	70.620	ENSMLEG00000006946	-	100	70.620	Mandrillus_leucophaeus
ENSCPBG00000003204	-	98	58.754	ENSMAMG00000012269	rad54b	99	57.143	Mastacembelus_armatus
ENSCPBG00000003204	-	98	58.121	ENSMZEG00005005281	rad54b	99	60.864	Maylandia_zebra
ENSCPBG00000003204	-	99	79.294	ENSMGAG00000012024	-	99	78.827	Meleagris_gallopavo
ENSCPBG00000003204	-	99	67.256	ENSMAUG00000013586	Rad54b	99	66.521	Mesocricetus_auratus
ENSCPBG00000003204	-	91	72.792	ENSMICG00000000754	-	96	72.792	Microcebus_murinus
ENSCPBG00000003204	-	99	66.745	ENSMOCG00000020035	Rad54b	99	66.015	Microtus_ochrogaster
ENSCPBG00000003204	-	99	55.930	ENSMMOG00000003394	rad54b	99	55.930	Mola_mola
ENSCPBG00000003204	-	88	75.310	ENSMODG00000007343	-	99	75.310	Monodelphis_domestica
ENSCPBG00000003204	-	65	66.905	ENSMALG00000001520	rad54b	99	62.754	Monopterus_albus
ENSCPBG00000003204	-	99	66.785	MGP_CAROLIEiJ_G0025810	Rad54b	99	66.266	Mus_caroli
ENSCPBG00000003204	-	99	66.863	ENSMUSG00000078773	Rad54b	99	66.124	Mus_musculus
ENSCPBG00000003204	-	99	66.823	MGP_PahariEiJ_G0023933	Rad54b	99	66.306	Mus_pahari
ENSCPBG00000003204	-	99	66.980	MGP_SPRETEiJ_G0026758	Rad54b	99	66.450	Mus_spretus
ENSCPBG00000003204	-	88	73.457	ENSMPUG00000008878	-	99	73.457	Mustela_putorius_furo
ENSCPBG00000003204	-	99	68.925	ENSMLUG00000008953	-	99	68.608	Myotis_lucifugus
ENSCPBG00000003204	-	99	68.038	ENSNGAG00000017537	Rad54b	99	67.312	Nannospalax_galili
ENSCPBG00000003204	-	86	63.019	ENSNBRG00000013394	rad54b	92	63.019	Neolamprologus_brichardi
ENSCPBG00000003204	-	99	71.631	ENSNLEG00000003062	-	99	76.236	Nomascus_leucogenys
ENSCPBG00000003204	-	70	72.388	ENSMEUG00000012426	-	71	72.388	Notamacropus_eugenii
ENSCPBG00000003204	-	99	69.059	ENSODEG00000019564	-	99	68.662	Octodon_degus
ENSCPBG00000003204	-	87	68.742	ENSODEG00000002650	-	95	74.154	Octodon_degus
ENSCPBG00000003204	-	98	59.742	ENSONIG00000006067	rad54b	99	58.217	Oreochromis_niloticus
ENSCPBG00000003204	-	82	77.394	ENSOANG00000011348	-	99	77.394	Ornithorhynchus_anatinus
ENSCPBG00000003204	-	99	69.095	ENSOCUG00000016478	-	99	68.587	Oryctolagus_cuniculus
ENSCPBG00000003204	-	98	58.362	ENSORLG00000008918	rad54b	99	63.833	Oryzias_latipes
ENSCPBG00000003204	-	68	66.038	ENSORLG00020012171	rad54b	99	63.679	Oryzias_latipes_hni
ENSCPBG00000003204	-	98	57.901	ENSORLG00015018536	rad54b	99	55.824	Oryzias_latipes_hsok
ENSCPBG00000003204	-	84	62.420	ENSOMEG00000004345	rad54b	99	62.420	Oryzias_melastigma
ENSCPBG00000003204	-	99	69.953	ENSOGAG00000007854	-	99	69.014	Otolemur_garnettii
ENSCPBG00000003204	-	88	73.522	ENSOARG00000007691	-	99	73.522	Ovis_aries
ENSCPBG00000003204	-	99	70.130	ENSPPAG00000029572	-	100	69.631	Pan_paniscus
ENSCPBG00000003204	-	99	69.376	ENSPPRG00000007571	-	99	75.207	Panthera_pardus
ENSCPBG00000003204	-	79	75.344	ENSPTIG00000012670	-	99	75.344	Panthera_tigris_altaica
ENSCPBG00000003204	-	99	71.260	ENSPTRG00000020427	-	100	76.099	Pan_troglodytes
ENSCPBG00000003204	-	99	70.729	ENSPANG00000019566	-	100	70.729	Papio_anubis
ENSCPBG00000003204	-	99	61.335	ENSPKIG00000014974	rad54b	99	59.595	Paramormyrops_kingsleyae
ENSCPBG00000003204	-	99	90.459	ENSPSIG00000002383	-	100	90.511	Pelodiscus_sinensis
ENSCPBG00000003204	-	99	67.254	ENSPEMG00000012133	Rad54b	99	66.522	Peromyscus_maniculatus_bairdii
ENSCPBG00000003204	-	84	62.535	ENSPMAG00000002916	rad54b	99	59.750	Petromyzon_marinus
ENSCPBG00000003204	-	89	74.572	ENSPCIG00000020151	-	94	74.572	Phascolarctos_cinereus
ENSCPBG00000003204	-	98	59.491	ENSPFOG00000023411	rad54b	99	57.705	Poecilia_formosa
ENSCPBG00000003204	-	98	59.606	ENSPLAG00000010430	rad54b	99	57.811	Poecilia_latipinna
ENSCPBG00000003204	-	98	59.676	ENSPMEG00000016873	rad54b	99	57.872	Poecilia_mexicana
ENSCPBG00000003204	-	98	59.212	ENSPREG00000018443	rad54b	99	57.569	Poecilia_reticulata
ENSCPBG00000003204	-	99	71.513	ENSPPYG00000018750	-	100	71.055	Pongo_abelii
ENSCPBG00000003204	-	99	71.395	ENSPCOG00000026845	-	99	76.309	Propithecus_coquereli
ENSCPBG00000003204	-	81	74.293	ENSPVAG00000000261	-	86	74.293	Pteropus_vampyrus
ENSCPBG00000003204	-	83	65.272	ENSPNYG00000018303	rad54b	95	62.991	Pundamilia_nyererei
ENSCPBG00000003204	-	98	58.140	ENSPNAG00000000295	rad54b	99	56.364	Pygocentrus_nattereri
ENSCPBG00000003204	-	99	67.020	ENSRNOG00000039949	Rad54b	99	66.521	Rattus_norvegicus
ENSCPBG00000003204	-	99	70.294	ENSRBIG00000020419	-	100	70.294	Rhinopithecus_bieti
ENSCPBG00000003204	-	99	70.185	ENSRROG00000039897	-	100	70.185	Rhinopithecus_roxellana
ENSCPBG00000003204	-	83	38.053	YBR073W	RDH54	88	36.425	Saccharomyces_cerevisiae
ENSCPBG00000003204	-	99	70.258	ENSSBOG00000028501	-	100	70.185	Saimiri_boliviensis_boliviensis
ENSCPBG00000003204	-	99	71.547	ENSSHAG00000017038	-	100	71.055	Sarcophilus_harrisii
ENSCPBG00000003204	-	67	68.366	ENSSFOG00015008483	rad54b	96	64.423	Scleropages_formosus
ENSCPBG00000003204	-	98	57.865	ENSSMAG00000018659	rad54b	99	56.725	Scophthalmus_maximus
ENSCPBG00000003204	-	98	58.094	ENSSDUG00000001122	rad54b	98	56.854	Seriola_dumerili
ENSCPBG00000003204	-	98	58.209	ENSSLDG00000013787	rad54b	99	57.188	Seriola_lalandi_dorsalis
ENSCPBG00000003204	-	100	81.330	ENSSPUG00000016497	-	99	81.650	Sphenodon_punctatus
ENSCPBG00000003204	-	98	59.600	ENSSPAG00000012800	rad54b	99	57.266	Stegastes_partitus
ENSCPBG00000003204	-	99	68.558	ENSSSCG00000006101	-	99	74.060	Sus_scrofa
ENSCPBG00000003204	-	99	77.882	ENSTGUG00000011880	-	100	77.826	Taeniopygia_guttata
ENSCPBG00000003204	-	98	58.199	ENSTRUG00000010015	rad54b	99	56.494	Takifugu_rubripes
ENSCPBG00000003204	-	99	66.194	ENSTTRG00000006312	-	99	65.870	Tursiops_truncatus
ENSCPBG00000003204	-	99	69.976	ENSUMAG00000016401	-	99	69.499	Ursus_maritimus
ENSCPBG00000003204	-	99	69.509	ENSVPAG00000003157	-	99	69.239	Vicugna_pacos
ENSCPBG00000003204	-	99	57.290	ENSXETG00000025924	rad54b	99	60.843	Xenopus_tropicalis
ENSCPBG00000003204	-	86	64.151	ENSXMAG00000013141	rad54b	94	61.567	Xiphophorus_maculatus