EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCPBG00000004719 (Gene tree)
Gene ID: 101933940
Gene Symbol: POLR1D
Alias: MGC9850|RPA16|RPA9|RPAC2|RPO1-3
Full Name: RNA polymerase I and III subunit D
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Minus strand
Length: 16844 bases
Position: chrKK083213.1:290645-307488
Accession: 20422
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000005905	RNA_pol_L_2	PF13656.6	3.5e-28	1	1
ENSCPBP00000005899	RNA_pol_L_2	PF13656.6	4.8e-28	1	1
ENSCPBP00000005910	RNA_pol_L_2	PF13656.6	4.8e-28	1	1
ENSCPBP00000005905	RNA_pol_L	PF01193.24	5.8e-11	1	1
ENSCPBP00000005899	RNA_pol_L	PF01193.24	7.9e-11	1	1
ENSCPBP00000005910	RNA_pol_L	PF01193.24	7.9e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000007172	POLR1D-203	1808	-	ENSCPBP00000005910	112 (aa)	-	-
ENSCPBT00000007167	POLR1D-202	986	-	ENSCPBP00000005905	101 (aa)	-	-
ENSCPBT00000007161	POLR1D-201	1470	-	ENSCPBP00000005899	112 (aa)	-	-

Gene Model

Click here to download ENSCPBG00000004719's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03020	RNA polymerase	KEGG
cpic04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000004719's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCPBG00000004719	POLR1D	92	32.039	ENSCPBG00000027774	-	84	32.039

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000004719	POLR1D	96	78.351	ENSG00000186184	POLR1D	84	78.351	Homo_sapiens
ENSCPBG00000004719	POLR1D	100	76.238	ENSAPOG00000021882	polr1d	95	76.238	Acanthochromis_polyacanthus
ENSCPBG00000004719	POLR1D	96	78.351	ENSAMEG00000019095	POLR1D	78	78.351	Ailuropoda_melanoleuca
ENSCPBG00000004719	POLR1D	99	80.000	ENSACIG00000013328	polr1d	87	80.000	Amphilophus_citrinellus
ENSCPBG00000004719	POLR1D	100	75.248	ENSAOCG00000018500	polr1d	89	75.248	Amphiprion_ocellaris
ENSCPBG00000004719	POLR1D	99	77.000	ENSAPEG00000009489	polr1d	89	75.248	Amphiprion_percula
ENSCPBG00000004719	POLR1D	100	76.238	ENSATEG00000019322	polr1d	89	77.000	Anabas_testudineus
ENSCPBG00000004719	POLR1D	53	74.074	ENSAPLG00000012757	POLR1D	100	74.074	Anas_platyrhynchos
ENSCPBG00000004719	POLR1D	99	71.569	ENSACAG00000015753	POLR1D	88	71.569	Anolis_carolinensis
ENSCPBG00000004719	POLR1D	96	78.351	ENSANAG00000024486	POLR1D	73	78.351	Aotus_nancymaae
ENSCPBG00000004719	POLR1D	100	80.198	ENSACLG00000023805	polr1d	89	80.198	Astatotilapia_calliptera
ENSCPBG00000004719	POLR1D	99	70.000	ENSAMXG00000036118	polr1d	87	70.000	Astyanax_mexicanus
ENSCPBG00000004719	POLR1D	96	78.351	ENSBTAG00000033252	-	73	78.351	Bos_taurus
ENSCPBG00000004719	POLR1D	96	78.351	ENSBTAG00000008642	POLR1D	73	78.351	Bos_taurus
ENSCPBG00000004719	POLR1D	79	40.000	WBGene00010230	rpac-19	56	40.000	Caenorhabditis_elegans
ENSCPBG00000004719	POLR1D	96	78.351	ENSCJAG00000044669	POLR1D	73	78.351	Callithrix_jacchus
ENSCPBG00000004719	POLR1D	96	78.351	ENSCAFG00000006755	POLR1D	73	78.351	Canis_familiaris
ENSCPBG00000004719	POLR1D	96	79.381	ENSCHIG00000021910	POLR1D	73	79.381	Capra_hircus
ENSCPBG00000004719	POLR1D	96	76.289	ENSTSYG00000026817	-	73	76.289	Carlito_syrichta
ENSCPBG00000004719	POLR1D	96	67.677	ENSTSYG00000034852	-	82	67.677	Carlito_syrichta
ENSCPBG00000004719	POLR1D	56	77.193	ENSCAPG00000006058	-	58	77.193	Cavia_aperea
ENSCPBG00000004719	POLR1D	56	77.193	ENSCPOG00000030450	-	58	77.193	Cavia_porcellus
ENSCPBG00000004719	POLR1D	96	79.381	ENSCCAG00000021349	-	73	79.381	Cebus_capucinus
ENSCPBG00000004719	POLR1D	96	57.732	ENSCCAG00000020191	-	71	58.824	Cebus_capucinus
ENSCPBG00000004719	POLR1D	96	68.041	ENSCATG00000022900	-	71	68.041	Cercocebus_atys
ENSCPBG00000004719	POLR1D	96	78.351	ENSCATG00000030710	-	73	78.351	Cercocebus_atys
ENSCPBG00000004719	POLR1D	96	78.351	ENSCLAG00000017623	POLR1D	78	78.351	Chinchilla_lanigera
ENSCPBG00000004719	POLR1D	96	76.289	ENSCANG00000037694	-	73	76.289	Colobus_angolensis_palliatus
ENSCPBG00000004719	POLR1D	96	78.351	ENSCANG00000028632	-	73	78.351	Colobus_angolensis_palliatus
ENSCPBG00000004719	POLR1D	96	77.320	ENSCGRG00001021251	Polr1d	73	77.320	Cricetulus_griseus_chok1gshd
ENSCPBG00000004719	POLR1D	96	77.320	ENSCGRG00000011639	Polr1d	73	77.320	Cricetulus_griseus_crigri
ENSCPBG00000004719	POLR1D	100	79.208	ENSCSEG00000018268	polr1d	86	79.208	Cynoglossus_semilaevis
ENSCPBG00000004719	POLR1D	100	78.218	ENSCVAG00000018527	polr1d	89	78.218	Cyprinodon_variegatus
ENSCPBG00000004719	POLR1D	97	70.408	ENSDARG00000037570	polr1d	88	70.408	Danio_rerio
ENSCPBG00000004719	POLR1D	96	78.351	ENSDNOG00000043676	-	73	78.351	Dasypus_novemcinctus
ENSCPBG00000004719	POLR1D	96	77.320	ENSDNOG00000046247	-	72	77.320	Dasypus_novemcinctus
ENSCPBG00000004719	POLR1D	96	76.289	ENSDORG00000029155	Polr1d	73	76.289	Dipodomys_ordii
ENSCPBG00000004719	POLR1D	88	42.000	FBgn0086447	l(2)37Cg	84	42.000	Drosophila_melanogaster
ENSCPBG00000004719	POLR1D	96	77.320	ENSETEG00000012797	POLR1D	78	77.320	Echinops_telfairi
ENSCPBG00000004719	POLR1D	90	68.132	ENSEBUG00000011748	polr1d	63	68.132	Eptatretus_burgeri
ENSCPBG00000004719	POLR1D	96	78.351	ENSEASG00005022487	POLR1D	75	78.351	Equus_asinus_asinus
ENSCPBG00000004719	POLR1D	96	78.351	ENSEEUG00000013144	POLR1D	78	78.351	Erinaceus_europaeus
ENSCPBG00000004719	POLR1D	95	79.167	ENSELUG00000005105	rpac2	84	79.167	Esox_lucius
ENSCPBG00000004719	POLR1D	96	78.351	ENSFCAG00000030162	POLR1D	73	78.351	Felis_catus
ENSCPBG00000004719	POLR1D	85	80.233	ENSFALG00000011463	POLR1D	85	80.233	Ficedula_albicollis
ENSCPBG00000004719	POLR1D	96	77.320	ENSFDAG00000004463	POLR1D	73	77.320	Fukomys_damarensis
ENSCPBG00000004719	POLR1D	100	77.228	ENSFHEG00000015410	polr1d	88	77.228	Fundulus_heteroclitus
ENSCPBG00000004719	POLR1D	53	74.074	ENSGALG00000007470	POLR1D	53	74.074	Gallus_gallus
ENSCPBG00000004719	POLR1D	100	78.218	ENSGAFG00000001693	polr1d	89	78.218	Gambusia_affinis
ENSCPBG00000004719	POLR1D	100	76.238	ENSGACG00000018585	polr1d	86	76.238	Gasterosteus_aculeatus
ENSCPBG00000004719	POLR1D	99	93.000	ENSGAGG00000008503	POLR1D	88	93.000	Gopherus_agassizii
ENSCPBG00000004719	POLR1D	96	78.351	ENSGGOG00000004235	POLR1D	73	78.351	Gorilla_gorilla
ENSCPBG00000004719	POLR1D	100	80.198	ENSHBUG00000002111	polr1d	89	80.198	Haplochromis_burtoni
ENSCPBG00000004719	POLR1D	96	77.320	ENSHGLG00000003202	POLR1D	73	77.320	Heterocephalus_glaber_female
ENSCPBG00000004719	POLR1D	96	77.320	ENSHGLG00100009393	POLR1D	73	77.320	Heterocephalus_glaber_male
ENSCPBG00000004719	POLR1D	99	74.000	ENSHCOG00000003258	polr1d	88	74.000	Hippocampus_comes
ENSCPBG00000004719	POLR1D	97	77.551	ENSIPUG00000014810	polr1d	85	77.551	Ictalurus_punctatus
ENSCPBG00000004719	POLR1D	96	78.351	ENSSTOG00000013877	POLR1D	73	78.351	Ictidomys_tridecemlineatus
ENSCPBG00000004719	POLR1D	96	77.320	ENSJJAG00000022671	-	81	77.320	Jaculus_jaculus
ENSCPBG00000004719	POLR1D	96	58.763	ENSJJAG00000021667	-	56	58.763	Jaculus_jaculus
ENSCPBG00000004719	POLR1D	100	74.257	ENSKMAG00000015256	polr1d	89	74.257	Kryptolebias_marmoratus
ENSCPBG00000004719	POLR1D	100	78.218	ENSLBEG00000015919	polr1d	89	78.218	Labrus_bergylta
ENSCPBG00000004719	POLR1D	93	72.340	ENSLACG00000006810	POLR1D	78	72.340	Latimeria_chalumnae
ENSCPBG00000004719	POLR1D	68	84.058	ENSLOCG00000014976	polr1d	93	84.058	Lepisosteus_oculatus
ENSCPBG00000004719	POLR1D	96	78.351	ENSLAFG00000032290	POLR1D	73	78.351	Loxodonta_africana
ENSCPBG00000004719	POLR1D	96	78.351	ENSMFAG00000045264	POLR1D	75	78.351	Macaca_fascicularis
ENSCPBG00000004719	POLR1D	71	73.611	ENSMMUG00000041570	-	65	73.611	Macaca_mulatta
ENSCPBG00000004719	POLR1D	96	78.351	ENSMMUG00000020386	POLR1D	84	78.351	Macaca_mulatta
ENSCPBG00000004719	POLR1D	96	78.351	ENSMNEG00000008630	-	73	78.351	Macaca_nemestrina
ENSCPBG00000004719	POLR1D	88	62.921	ENSMNEG00000038120	-	68	62.921	Macaca_nemestrina
ENSCPBG00000004719	POLR1D	96	78.351	ENSMLEG00000041048	-	73	78.351	Mandrillus_leucophaeus
ENSCPBG00000004719	POLR1D	96	68.041	ENSMLEG00000032251	-	71	68.041	Mandrillus_leucophaeus
ENSCPBG00000004719	POLR1D	99	78.000	ENSMAMG00000014834	polr1d	93	78.000	Mastacembelus_armatus
ENSCPBG00000004719	POLR1D	99	81.000	ENSMZEG00005006638	polr1d	88	81.000	Maylandia_zebra
ENSCPBG00000004719	POLR1D	90	81.319	ENSMGAG00000005322	POLR1D	83	81.319	Meleagris_gallopavo
ENSCPBG00000004719	POLR1D	96	77.320	ENSMAUG00000001946	Polr1d	73	77.320	Mesocricetus_auratus
ENSCPBG00000004719	POLR1D	96	79.381	ENSMICG00000016883	-	73	79.381	Microcebus_murinus
ENSCPBG00000004719	POLR1D	96	61.856	ENSMICG00000007349	-	72	61.856	Microcebus_murinus
ENSCPBG00000004719	POLR1D	96	76.289	ENSMOCG00000021288	Polr1d	73	76.289	Microtus_ochrogaster
ENSCPBG00000004719	POLR1D	100	77.228	ENSMMOG00000009605	polr1d	89	77.228	Mola_mola
ENSCPBG00000004719	POLR1D	99	86.000	ENSMODG00000023881	POLR1D	88	86.000	Monodelphis_domestica
ENSCPBG00000004719	POLR1D	100	75.248	ENSMALG00000010652	polr1d	89	75.248	Monopterus_albus
ENSCPBG00000004719	POLR1D	96	74.227	MGP_CAROLIEiJ_G0028034	Polr1d	73	74.227	Mus_caroli
ENSCPBG00000004719	POLR1D	96	74.227	ENSMUSG00000029642	Polr1d	73	74.227	Mus_musculus
ENSCPBG00000004719	POLR1D	96	74.227	MGP_PahariEiJ_G0024600	Polr1d	73	74.227	Mus_pahari
ENSCPBG00000004719	POLR1D	96	75.258	MGP_SPRETEiJ_G0029032	Polr1d	73	75.258	Mus_spretus
ENSCPBG00000004719	POLR1D	95	79.167	ENSMLUG00000027169	-	73	79.167	Myotis_lucifugus
ENSCPBG00000004719	POLR1D	93	73.404	ENSMLUG00000004118	-	71	73.404	Myotis_lucifugus
ENSCPBG00000004719	POLR1D	96	77.320	ENSNGAG00000006014	Polr1d	84	77.320	Nannospalax_galili
ENSCPBG00000004719	POLR1D	100	80.198	ENSNBRG00000020327	polr1d	89	80.198	Neolamprologus_brichardi
ENSCPBG00000004719	POLR1D	96	78.351	ENSNLEG00000000358	POLR1D	73	78.351	Nomascus_leucogenys
ENSCPBG00000004719	POLR1D	96	78.351	ENSODEG00000005294	-	73	78.351	Octodon_degus
ENSCPBG00000004719	POLR1D	96	64.948	ENSODEG00000014801	-	71	65.882	Octodon_degus
ENSCPBG00000004719	POLR1D	99	86.000	ENSOANG00000008708	-	93	86.000	Ornithorhynchus_anatinus
ENSCPBG00000004719	POLR1D	96	78.351	ENSOCUG00000015706	POLR1D	60	78.351	Oryctolagus_cuniculus
ENSCPBG00000004719	POLR1D	99	72.000	ENSORLG00000010257	polr1d	89	70.297	Oryzias_latipes
ENSCPBG00000004719	POLR1D	99	72.000	ENSORLG00020000533	polr1d	68	70.297	Oryzias_latipes_hni
ENSCPBG00000004719	POLR1D	99	73.000	ENSORLG00015013267	polr1d	67	71.287	Oryzias_latipes_hsok
ENSCPBG00000004719	POLR1D	100	71.287	ENSOMEG00000014912	polr1d	67	71.287	Oryzias_melastigma
ENSCPBG00000004719	POLR1D	96	79.381	ENSOGAG00000014601	POLR1D	73	79.381	Otolemur_garnettii
ENSCPBG00000004719	POLR1D	96	79.381	ENSOARG00000017005	POLR1D	75	79.381	Ovis_aries
ENSCPBG00000004719	POLR1D	96	78.351	ENSPPAG00000028138	POLR1D	73	78.351	Pan_paniscus
ENSCPBG00000004719	POLR1D	96	78.351	ENSPPRG00000003381	POLR1D	73	78.351	Panthera_pardus
ENSCPBG00000004719	POLR1D	96	78.351	ENSPTIG00000018137	POLR1D	73	78.351	Panthera_tigris_altaica
ENSCPBG00000004719	POLR1D	96	78.351	ENSPTRG00000005734	POLR1D	73	78.351	Pan_troglodytes
ENSCPBG00000004719	POLR1D	96	65.979	ENSPANG00000035051	-	71	65.979	Papio_anubis
ENSCPBG00000004719	POLR1D	96	78.351	ENSPANG00000020259	-	73	78.351	Papio_anubis
ENSCPBG00000004719	POLR1D	87	73.864	ENSPKIG00000021891	polr1d	84	56.604	Paramormyrops_kingsleyae
ENSCPBG00000004719	POLR1D	99	85.000	ENSPSIG00000011822	POLR1D	78	85.000	Pelodiscus_sinensis
ENSCPBG00000004719	POLR1D	100	65.347	ENSPMGG00000012998	POLR1D	73	65.347	Periophthalmus_magnuspinnatus
ENSCPBG00000004719	POLR1D	100	74.257	ENSPMGG00000010359	polr1d	88	74.257	Periophthalmus_magnuspinnatus
ENSCPBG00000004719	POLR1D	96	78.351	ENSPEMG00000006336	-	75	78.351	Peromyscus_maniculatus_bairdii
ENSCPBG00000004719	POLR1D	93	63.830	ENSPMAG00000004228	polr1d	79	63.830	Petromyzon_marinus
ENSCPBG00000004719	POLR1D	99	86.000	ENSPCIG00000001673	POLR1D	88	86.000	Phascolarctos_cinereus
ENSCPBG00000004719	POLR1D	100	78.218	ENSPFOG00000023343	polr1d	89	78.218	Poecilia_formosa
ENSCPBG00000004719	POLR1D	100	78.218	ENSPLAG00000009675	polr1d	89	78.218	Poecilia_latipinna
ENSCPBG00000004719	POLR1D	100	78.218	ENSPMEG00000004628	polr1d	89	78.218	Poecilia_mexicana
ENSCPBG00000004719	POLR1D	100	78.218	ENSPREG00000022032	polr1d	89	78.218	Poecilia_reticulata
ENSCPBG00000004719	POLR1D	96	77.320	ENSPCOG00000028175	POLR1D	73	77.320	Propithecus_coquereli
ENSCPBG00000004719	POLR1D	100	80.198	ENSPNYG00000000107	polr1d	89	80.198	Pundamilia_nyererei
ENSCPBG00000004719	POLR1D	95	70.833	ENSPNAG00000001512	polr1d	82	70.103	Pygocentrus_nattereri
ENSCPBG00000004719	POLR1D	96	75.258	ENSRBIG00000000336	-	73	75.258	Rhinopithecus_bieti
ENSCPBG00000004719	POLR1D	96	78.351	ENSRBIG00000036378	-	73	78.351	Rhinopithecus_bieti
ENSCPBG00000004719	POLR1D	96	76.289	ENSRROG00000026751	-	73	76.289	Rhinopithecus_roxellana
ENSCPBG00000004719	POLR1D	96	78.351	ENSRROG00000042232	-	73	78.351	Rhinopithecus_roxellana
ENSCPBG00000004719	POLR1D	92	51.613	YNL113W	RPC19	68	52.083	Saccharomyces_cerevisiae
ENSCPBG00000004719	POLR1D	97	72.449	ENSSBOG00000030146	-	72	72.449	Saimiri_boliviensis_boliviensis
ENSCPBG00000004719	POLR1D	96	78.351	ENSSBOG00000028482	-	73	78.351	Saimiri_boliviensis_boliviensis
ENSCPBG00000004719	POLR1D	99	85.000	ENSSHAG00000001190	POLR1D	78	85.000	Sarcophilus_harrisii
ENSCPBG00000004719	POLR1D	99	79.000	ENSSFOG00015011375	polr1d	87	79.000	Scleropages_formosus
ENSCPBG00000004719	POLR1D	100	78.218	ENSSMAG00000011861	polr1d	89	78.218	Scophthalmus_maximus
ENSCPBG00000004719	POLR1D	100	77.228	ENSSDUG00000011930	polr1d	89	77.228	Seriola_dumerili
ENSCPBG00000004719	POLR1D	99	78.000	ENSSLDG00000023871	polr1d	85	78.000	Seriola_lalandi_dorsalis
ENSCPBG00000004719	POLR1D	96	77.320	ENSSARG00000007840	POLR1D	73	77.320	Sorex_araneus
ENSCPBG00000004719	POLR1D	90	86.813	ENSSPUG00000005786	POLR1D	84	82.653	Sphenodon_punctatus
ENSCPBG00000004719	POLR1D	100	78.218	ENSSPAG00000011764	polr1d	89	78.218	Stegastes_partitus
ENSCPBG00000004719	POLR1D	96	79.381	ENSSSCG00000009310	POLR1D	73	79.381	Sus_scrofa
ENSCPBG00000004719	POLR1D	85	81.395	ENSTGUG00000005450	POLR1D	90	81.395	Taeniopygia_guttata
ENSCPBG00000004719	POLR1D	100	73.267	ENSTRUG00000019741	polr1d	89	73.267	Takifugu_rubripes
ENSCPBG00000004719	POLR1D	96	78.351	ENSTBEG00000007006	POLR1D	78	78.351	Tupaia_belangeri
ENSCPBG00000004719	POLR1D	96	78.351	ENSUAMG00000011413	POLR1D	73	78.351	Ursus_americanus
ENSCPBG00000004719	POLR1D	96	78.351	ENSUMAG00000016968	POLR1D	76	78.351	Ursus_maritimus
ENSCPBG00000004719	POLR1D	96	78.351	ENSVVUG00000009216	POLR1D	73	78.351	Vulpes_vulpes
ENSCPBG00000004719	POLR1D	100	78.218	ENSXCOG00000011731	polr1d	78	78.218	Xiphophorus_couchianus
ENSCPBG00000004719	POLR1D	100	79.208	ENSXMAG00000017538	polr1d	78	79.208	Xiphophorus_maculatus