EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCPBG00000004750 (Gene tree)
Gene ID: 101949846
Gene Symbol: CASC3
Alias: BTZ|MLN51
Full Name: CASC3%2C exon junction complex subunit
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Plus strand
Length: 16063 bases
Position: chrKK088207.1:5579547-5595609
Accession: 17040
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000005944	Btz	PF09405.10	5.3e-23	1	1
ENSCPBP00000005961	Btz	PF09405.10	5.3e-23	1	1
ENSCPBP00000005952	Btz	PF09405.10	5.9e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000007214	CASC3-201	3657	-	ENSCPBP00000005944	656 (aa)	-	-
ENSCPBT00000007222	CASC3-202	3260	-	ENSCPBP00000005952	709 (aa)	XP_005294182	UPI000388A587
ENSCPBT00000007233	CASC3-203	3308	-	ENSCPBP00000005961	658 (aa)	-	-

Gene Model

Click here to download ENSCPBG00000004750's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03013	RNA transport	KEGG
cpic03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000004750's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000004750	CASC3	99	74.579	ENSG00000108349	CASC3	99	75.281	Homo_sapiens
ENSCPBG00000004750	CASC3	68	70.455	ENSAPOG00000008467	casc3	99	42.250	Acanthochromis_polyacanthus
ENSCPBG00000004750	CASC3	99	75.281	ENSAMEG00000007764	CASC3	99	75.385	Ailuropoda_melanoleuca
ENSCPBG00000004750	CASC3	84	48.837	ENSACIG00000000720	casc3	83	48.288	Amphilophus_citrinellus
ENSCPBG00000004750	CASC3	81	53.153	ENSATEG00000017196	casc3	99	41.341	Anabas_testudineus
ENSCPBG00000004750	CASC3	95	78.730	ENSACAG00000002674	CASC3	98	75.139	Anolis_carolinensis
ENSCPBG00000004750	CASC3	65	86.256	ENSANAG00000031954	-	99	86.256	Aotus_nancymaae
ENSCPBG00000004750	CASC3	91	70.687	ENSANAG00000034820	-	99	68.608	Aotus_nancymaae
ENSCPBG00000004750	CASC3	72	66.013	ENSACLG00000016198	casc3	78	50.464	Astatotilapia_calliptera
ENSCPBG00000004750	CASC3	95	48.808	ENSAMXG00000032452	casc3	98	47.089	Astyanax_mexicanus
ENSCPBG00000004750	CASC3	99	74.719	ENSBTAG00000006250	CASC3	99	74.755	Bos_taurus
ENSCPBG00000004750	CASC3	95	76.490	ENSCJAG00000016032	CASC3	99	73.380	Callithrix_jacchus
ENSCPBG00000004750	CASC3	99	74.719	ENSCAFG00000016141	CASC3	99	75.385	Canis_familiaris
ENSCPBG00000004750	CASC3	95	78.422	ENSCAFG00020018882	CASC3	99	74.441	Canis_lupus_dingo
ENSCPBG00000004750	CASC3	95	77.939	ENSCHIG00000006338	CASC3	99	73.352	Capra_hircus
ENSCPBG00000004750	CASC3	95	77.939	ENSTSYG00000002975	CASC3	89	78.571	Carlito_syrichta
ENSCPBG00000004750	CASC3	94	75.968	ENSCAPG00000010514	CASC3	99	76.547	Cavia_aperea
ENSCPBG00000004750	CASC3	98	73.488	ENSCPOG00000015139	CASC3	99	72.931	Cavia_porcellus
ENSCPBG00000004750	CASC3	95	77.456	ENSCCAG00000033620	CASC3	99	74.438	Cebus_capucinus
ENSCPBG00000004750	CASC3	99	74.225	ENSCATG00000033593	CASC3	99	74.930	Cercocebus_atys
ENSCPBG00000004750	CASC3	98	73.643	ENSCLAG00000013730	CASC3	99	73.174	Chinchilla_lanigera
ENSCPBG00000004750	CASC3	99	74.438	ENSCSAG00000002777	CASC3	99	75.140	Chlorocebus_sabaeus
ENSCPBG00000004750	CASC3	99	74.085	ENSCANG00000008814	CASC3	99	74.789	Colobus_angolensis_palliatus
ENSCPBG00000004750	CASC3	99	73.513	ENSCGRG00001014706	Casc3	99	73.455	Cricetulus_griseus_chok1gshd
ENSCPBG00000004750	CASC3	95	77.295	ENSCGRG00000001952	Casc3	95	77.134	Cricetulus_griseus_crigri
ENSCPBG00000004750	CASC3	68	74.590	ENSCSEG00000010047	casc3	77	48.773	Cynoglossus_semilaevis
ENSCPBG00000004750	CASC3	99	74.438	ENSDNOG00000017249	CASC3	96	74.685	Dasypus_novemcinctus
ENSCPBG00000004750	CASC3	99	70.099	ENSETEG00000013720	CASC3	99	70.886	Echinops_telfairi
ENSCPBG00000004750	CASC3	98	37.008	ENSEBUG00000010654	casc3	98	35.799	Eptatretus_burgeri
ENSCPBG00000004750	CASC3	95	78.422	ENSEASG00005002909	CASC3	99	73.566	Equus_asinus_asinus
ENSCPBG00000004750	CASC3	95	78.583	ENSECAG00000019947	CASC3	88	74.614	Equus_caballus
ENSCPBG00000004750	CASC3	72	69.407	ENSEEUG00000014253	CASC3	100	69.216	Erinaceus_europaeus
ENSCPBG00000004750	CASC3	99	74.719	ENSFCAG00000014998	CASC3	99	74.965	Felis_catus
ENSCPBG00000004750	CASC3	95	79.471	ENSFALG00000000412	CASC3	99	79.160	Ficedula_albicollis
ENSCPBG00000004750	CASC3	96	73.968	ENSFDAG00000020696	CASC3	97	73.406	Fukomys_damarensis
ENSCPBG00000004750	CASC3	81	55.799	ENSFHEG00000015793	casc3	99	44.515	Fundulus_heteroclitus
ENSCPBG00000004750	CASC3	97	81.690	ENSGALG00000031813	CASC3	100	77.887	Gallus_gallus
ENSCPBG00000004750	CASC3	75	52.000	ENSGAFG00000017148	casc3	67	50.655	Gambusia_affinis
ENSCPBG00000004750	CASC3	96	96.979	ENSGAGG00000008432	CASC3	95	97.440	Gopherus_agassizii
ENSCPBG00000004750	CASC3	99	74.719	ENSGGOG00000005067	CASC3	99	74.719	Gorilla_gorilla
ENSCPBG00000004750	CASC3	81	54.462	ENSHBUG00000013155	casc3	78	50.774	Haplochromis_burtoni
ENSCPBG00000004750	CASC3	98	73.798	ENSHGLG00000012117	CASC3	99	72.651	Heterocephalus_glaber_female
ENSCPBG00000004750	CASC3	95	76.167	ENSHGLG00100002268	CASC3	99	76.349	Heterocephalus_glaber_male
ENSCPBG00000004750	CASC3	53	46.429	ENSHCOG00000002664	casc3	99	42.416	Hippocampus_comes
ENSCPBG00000004750	CASC3	97	48.307	ENSIPUG00000002679	casc3	98	47.247	Ictalurus_punctatus
ENSCPBG00000004750	CASC3	95	78.583	ENSSTOG00000006374	CASC3	99	74.334	Ictidomys_tridecemlineatus
ENSCPBG00000004750	CASC3	99	72.560	ENSJJAG00000023525	Casc3	99	73.662	Jaculus_jaculus
ENSCPBG00000004750	CASC3	61	65.190	ENSKMAG00000019507	casc3	99	41.304	Kryptolebias_marmoratus
ENSCPBG00000004750	CASC3	71	68.182	ENSLBEG00000005435	casc3	58	65.734	Labrus_bergylta
ENSCPBG00000004750	CASC3	94	66.244	ENSLACG00000013200	CASC3	99	60.082	Latimeria_chalumnae
ENSCPBG00000004750	CASC3	70	77.778	ENSLOCG00000013518	casc3	68	71.981	Lepisosteus_oculatus
ENSCPBG00000004750	CASC3	99	73.418	ENSLAFG00000000606	CASC3	99	74.053	Loxodonta_africana
ENSCPBG00000004750	CASC3	99	74.225	ENSMFAG00000041496	CASC3	99	74.930	Macaca_fascicularis
ENSCPBG00000004750	CASC3	99	74.225	ENSMMUG00000045187	CASC3	99	74.930	Macaca_mulatta
ENSCPBG00000004750	CASC3	95	78.100	ENSMLEG00000029049	CASC3	99	78.254	Mandrillus_leucophaeus
ENSCPBG00000004750	CASC3	77	54.430	ENSMAMG00000005235	casc3	85	50.311	Mastacembelus_armatus
ENSCPBG00000004750	CASC3	72	66.013	ENSMZEG00005003815	casc3	78	50.464	Maylandia_zebra
ENSCPBG00000004750	CASC3	93	83.115	ENSMGAG00000013247	CASC3	99	81.596	Meleagris_gallopavo
ENSCPBG00000004750	CASC3	77	75.000	ENSMAUG00000006023	Casc3	99	60.085	Mesocricetus_auratus
ENSCPBG00000004750	CASC3	95	77.778	ENSMICG00000003321	CASC3	99	73.986	Microcebus_murinus
ENSCPBG00000004750	CASC3	99	73.371	ENSMOCG00000013644	Casc3	99	72.331	Microtus_ochrogaster
ENSCPBG00000004750	CASC3	73	57.988	ENSMMOG00000014339	casc3	99	43.075	Mola_mola
ENSCPBG00000004750	CASC3	99	71.875	ENSMODG00000013044	CASC3	92	71.509	Monodelphis_domestica
ENSCPBG00000004750	CASC3	69	78.218	ENSMALG00000019771	casc3	83	46.416	Monopterus_albus
ENSCPBG00000004750	CASC3	99	72.380	MGP_CAROLIEiJ_G0017099	Casc3	99	71.208	Mus_caroli
ENSCPBG00000004750	CASC3	99	72.096	ENSMUSG00000078676	Casc3	99	70.927	Mus_musculus
ENSCPBG00000004750	CASC3	99	72.650	MGP_SPRETEiJ_G0017943	Casc3	99	71.328	Mus_spretus
ENSCPBG00000004750	CASC3	99	74.719	ENSMPUG00000014903	CASC3	99	75.245	Mustela_putorius_furo
ENSCPBG00000004750	CASC3	99	73.072	ENSMLUG00000010520	CASC3	99	73.883	Myotis_lucifugus
ENSCPBG00000004750	CASC3	99	72.599	ENSNGAG00000023121	Casc3	99	71.629	Nannospalax_galili
ENSCPBG00000004750	CASC3	99	73.662	ENSNLEG00000001598	CASC3	99	73.803	Nomascus_leucogenys
ENSCPBG00000004750	CASC3	60	62.824	ENSMEUG00000015662	CASC3	97	60.188	Notamacropus_eugenii
ENSCPBG00000004750	CASC3	72	66.411	ENSOPRG00000007240	-	75	67.113	Ochotona_princeps
ENSCPBG00000004750	CASC3	98	72.868	ENSODEG00000017858	CASC3	99	72.028	Octodon_degus
ENSCPBG00000004750	CASC3	81	54.434	ENSONIG00000009337	casc3	99	46.914	Oreochromis_niloticus
ENSCPBG00000004750	CASC3	84	50.615	ENSOANG00000003499	-	96	51.300	Ornithorhynchus_anatinus
ENSCPBG00000004750	CASC3	99	73.669	ENSOCUG00000002954	CASC3	99	72.803	Oryctolagus_cuniculus
ENSCPBG00000004750	CASC3	98	74.048	ENSOGAG00000034486	CASC3	98	74.507	Otolemur_garnettii
ENSCPBG00000004750	CASC3	99	74.755	ENSOARG00000013239	CASC3	99	74.755	Ovis_aries
ENSCPBG00000004750	CASC3	99	74.579	ENSPPAG00000035069	CASC3	99	75.281	Pan_paniscus
ENSCPBG00000004750	CASC3	99	75.000	ENSPPRG00000023670	CASC3	99	75.245	Panthera_pardus
ENSCPBG00000004750	CASC3	95	78.744	ENSPTIG00000010891	CASC3	90	78.315	Panthera_tigris_altaica
ENSCPBG00000004750	CASC3	99	74.225	ENSPANG00000021708	CASC3	99	74.930	Papio_anubis
ENSCPBG00000004750	CASC3	95	49.721	ENSPKIG00000023186	casc3	98	47.487	Paramormyrops_kingsleyae
ENSCPBG00000004750	CASC3	99	73.729	ENSPEMG00000009774	Casc3	99	72.409	Peromyscus_maniculatus_bairdii
ENSCPBG00000004750	CASC3	96	76.984	ENSPCIG00000025678	CASC3	99	73.484	Phascolarctos_cinereus
ENSCPBG00000004750	CASC3	95	47.424	ENSPFOG00000017632	casc3	100	47.326	Poecilia_formosa
ENSCPBG00000004750	CASC3	77	56.090	ENSPLAG00000005268	casc3	76	52.215	Poecilia_latipinna
ENSCPBG00000004750	CASC3	68	45.898	ENSPMEG00000010299	casc3	92	42.834	Poecilia_mexicana
ENSCPBG00000004750	CASC3	66	70.968	ENSPREG00000011856	casc3	91	46.349	Poecilia_reticulata
ENSCPBG00000004750	CASC3	95	77.295	ENSPPYG00000008467	CASC3	99	74.614	Pongo_abelii
ENSCPBG00000004750	CASC3	99	73.521	ENSPCOG00000008183	CASC3	99	74.011	Propithecus_coquereli
ENSCPBG00000004750	CASC3	99	73.699	ENSPVAG00000008556	CASC3	99	74.545	Pteropus_vampyrus
ENSCPBG00000004750	CASC3	81	54.154	ENSPNYG00000011962	casc3	78	50.464	Pundamilia_nyererei
ENSCPBG00000004750	CASC3	97	46.463	ENSPNAG00000015928	casc3	98	45.214	Pygocentrus_nattereri
ENSCPBG00000004750	CASC3	83	82.949	ENSRNOG00000009716	Casc3	50	77.778	Rattus_norvegicus
ENSCPBG00000004750	CASC3	99	74.438	ENSRBIG00000033289	CASC3	99	73.662	Rhinopithecus_bieti
ENSCPBG00000004750	CASC3	99	74.225	ENSRROG00000022337	CASC3	99	74.930	Rhinopithecus_roxellana
ENSCPBG00000004750	CASC3	97	76.378	ENSSBOG00000031406	CASC3	99	76.789	Saimiri_boliviensis_boliviensis
ENSCPBG00000004750	CASC3	95	79.032	ENSSHAG00000013338	CASC3	99	78.095	Sarcophilus_harrisii
ENSCPBG00000004750	CASC3	95	49.441	ENSSFOG00015002645	casc3	99	47.191	Scleropages_formosus
ENSCPBG00000004750	CASC3	69	67.361	ENSSMAG00000016096	casc3	72	55.851	Scophthalmus_maximus
ENSCPBG00000004750	CASC3	68	75.410	ENSSDUG00000016893	casc3	76	51.118	Seriola_dumerili
ENSCPBG00000004750	CASC3	73	61.935	ENSSLDG00000020308	casc3	72	61.146	Seriola_lalandi_dorsalis
ENSCPBG00000004750	CASC3	91	67.057	ENSSARG00000010378	CASC3	97	66.442	Sorex_araneus
ENSCPBG00000004750	CASC3	95	78.422	ENSSSCG00000017477	CASC3	99	78.730	Sus_scrofa
ENSCPBG00000004750	CASC3	80	81.453	ENSTGUG00000002300	CASC3	99	81.766	Taeniopygia_guttata
ENSCPBG00000004750	CASC3	94	47.253	ENSTNIG00000003208	casc3	99	46.228	Tetraodon_nigroviridis
ENSCPBG00000004750	CASC3	65	86.667	ENSTBEG00000017459	CASC3	66	84.762	Tupaia_belangeri
ENSCPBG00000004750	CASC3	93	67.928	ENSTTRG00000016896	CASC3	97	67.622	Tursiops_truncatus
ENSCPBG00000004750	CASC3	95	78.744	ENSUAMG00000015116	CASC3	99	74.162	Ursus_americanus
ENSCPBG00000004750	CASC3	95	78.100	ENSUMAG00000017697	CASC3	99	77.778	Ursus_maritimus
ENSCPBG00000004750	CASC3	75	88.136	ENSVPAG00000000799	CASC3	74	88.136	Vicugna_pacos
ENSCPBG00000004750	CASC3	99	74.579	ENSVVUG00000000997	CASC3	99	75.245	Vulpes_vulpes
ENSCPBG00000004750	CASC3	97	60.896	ENSXETG00000024395	casc3	98	58.626	Xenopus_tropicalis
ENSCPBG00000004750	CASC3	70	67.333	ENSXMAG00000013937	casc3	99	43.387	Xiphophorus_maculatus