EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCPBG00000005587 (Gene tree)
Gene ID: 101951227
Gene Symbol: TARBP1
Alias: TRM3|TRMT3|TRP-185
Full Name: TAR (HIV-1) RNA binding protein 1
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Plus strand
Length: 97779 bases
Position: chrKK082948.1:2505335-2603113
Accession: 11568
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000007331	SpoU_methylase	PF00588.19	1.8e-07	1	1
ENSCPBP00000007346	SpoU_methylase	PF00588.19	1.8e-07	1	1
ENSCPBP00000007356	SpoU_methylase	PF00588.19	1.8e-07	1	1
ENSCPBP00000007320	SpoU_methylase	PF00588.19	2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000008841	TARBP1-201	4509	-	ENSCPBP00000007320	1502 (aa)	-	-
ENSCPBT00000008870	TARBP1-203	4176	-	ENSCPBP00000007346	1391 (aa)	-	-
ENSCPBT00000008852	TARBP1-202	4212	-	ENSCPBP00000007331	1403 (aa)	-	-
ENSCPBT00000008880	TARBP1-204	4140	-	ENSCPBP00000007356	1379 (aa)	-	-

Gene Model

Click here to download ENSCPBG00000005587's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000005587's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000005587	TARBP1	99	68.335	ENSG00000059588	TARBP1	95	66.151	Homo_sapiens
ENSCPBG00000005587	TARBP1	97	41.797	ENSAPOG00000016419	si:dkey-85a20.4	78	44.798	Acanthochromis_polyacanthus
ENSCPBG00000005587	TARBP1	81	77.116	ENSAMEG00000003359	TARBP1	92	69.788	Ailuropoda_melanoleuca
ENSCPBG00000005587	TARBP1	95	41.758	ENSATEG00000020266	si:dkey-85a20.4	74	52.258	Anabas_testudineus
ENSCPBG00000005587	TARBP1	78	82.576	ENSAPLG00000007666	TARBP1	94	77.841	Anas_platyrhynchos
ENSCPBG00000005587	TARBP1	97	66.022	ENSACAG00000001142	TARBP1	94	63.678	Anolis_carolinensis
ENSCPBG00000005587	TARBP1	88	67.570	ENSANAG00000022031	TARBP1	94	64.702	Aotus_nancymaae
ENSCPBG00000005587	TARBP1	90	75.362	ENSBTAG00000004517	TARBP1	93	75.362	Bos_taurus
ENSCPBG00000005587	TARBP1	99	65.508	ENSCJAG00000018155	TARBP1	95	65.288	Callithrix_jacchus
ENSCPBG00000005587	TARBP1	86	70.588	ENSCAFG00000011533	TARBP1	93	68.703	Canis_familiaris
ENSCPBG00000005587	TARBP1	85	71.467	ENSCAFG00020027141	TARBP1	94	64.782	Canis_lupus_dingo
ENSCPBG00000005587	TARBP1	98	64.606	ENSCHIG00000011437	TARBP1	94	65.127	Capra_hircus
ENSCPBG00000005587	TARBP1	76	76.894	ENSTSYG00000010382	TARBP1	91	69.463	Carlito_syrichta
ENSCPBG00000005587	TARBP1	78	58.844	ENSCAPG00000010831	TARBP1	92	59.312	Cavia_aperea
ENSCPBG00000005587	TARBP1	98	60.752	ENSCPOG00000013995	TARBP1	94	61.478	Cavia_porcellus
ENSCPBG00000005587	TARBP1	99	65.357	ENSCCAG00000037278	TARBP1	95	65.613	Cebus_capucinus
ENSCPBG00000005587	TARBP1	99	65.744	ENSCATG00000011754	TARBP1	94	66.645	Cercocebus_atys
ENSCPBG00000005587	TARBP1	80	66.172	ENSCLAG00000003655	TARBP1	89	66.172	Chinchilla_lanigera
ENSCPBG00000005587	TARBP1	76	79.167	ENSCSAG00000010100	TARBP1	89	80.000	Chlorocebus_sabaeus
ENSCPBG00000005587	TARBP1	83	77.409	ENSCANG00000034343	TARBP1	89	77.409	Colobus_angolensis_palliatus
ENSCPBG00000005587	TARBP1	98	62.025	ENSCGRG00001016690	Tarbp1	94	61.825	Cricetulus_griseus_chok1gshd
ENSCPBG00000005587	TARBP1	91	62.872	ENSCGRG00000016893	Tarbp1	92	62.364	Cricetulus_griseus_crigri
ENSCPBG00000005587	TARBP1	93	42.494	ENSCSEG00000005255	si:dkey-85a20.4	78	43.356	Cynoglossus_semilaevis
ENSCPBG00000005587	TARBP1	98	40.678	ENSDARG00000079055	si:dkey-85a20.4	83	52.041	Danio_rerio
ENSCPBG00000005587	TARBP1	98	64.391	ENSDNOG00000008637	TARBP1	94	65.517	Dasypus_novemcinctus
ENSCPBG00000005587	TARBP1	76	76.448	ENSDORG00000007984	Tarbp1	82	76.448	Dipodomys_ordii
ENSCPBG00000005587	TARBP1	97	70.122	ENSEASG00005000252	TARBP1	94	67.039	Equus_asinus_asinus
ENSCPBG00000005587	TARBP1	98	66.406	ENSECAG00000023673	TARBP1	93	71.429	Equus_caballus
ENSCPBG00000005587	TARBP1	85	48.974	ENSELUG00000012193	si:dkey-85a20.4	77	49.062	Esox_lucius
ENSCPBG00000005587	TARBP1	98	62.484	ENSFCAG00000014183	TARBP1	94	62.816	Felis_catus
ENSCPBG00000005587	TARBP1	78	82.890	ENSFALG00000013565	TARBP1	94	75.814	Ficedula_albicollis
ENSCPBG00000005587	TARBP1	76	79.167	ENSFDAG00000001308	TARBP1	82	79.167	Fukomys_damarensis
ENSCPBG00000005587	TARBP1	96	44.147	ENSFHEG00000007565	si:dkey-85a20.4	92	48.450	Fundulus_heteroclitus
ENSCPBG00000005587	TARBP1	81	48.555	ENSGMOG00000004549	si:dkey-85a20.4	91	42.146	Gadus_morhua
ENSCPBG00000005587	TARBP1	99	68.886	ENSGALG00000011000	TARBP1	94	68.954	Gallus_gallus
ENSCPBG00000005587	TARBP1	96	43.109	ENSGAFG00000007387	si:dkey-85a20.4	78	44.557	Gambusia_affinis
ENSCPBG00000005587	TARBP1	85	48.071	ENSGACG00000005865	si:dkey-85a20.4	85	49.351	Gasterosteus_aculeatus
ENSCPBG00000005587	TARBP1	99	92.622	ENSGAGG00000012102	TARBP1	95	92.622	Gopherus_agassizii
ENSCPBG00000005587	TARBP1	84	76.656	ENSGGOG00000022879	TARBP1	89	76.656	Gorilla_gorilla
ENSCPBG00000005587	TARBP1	81	51.156	ENSHBUG00000008877	si:dkey-85a20.4	74	52.922	Haplochromis_burtoni
ENSCPBG00000005587	TARBP1	98	61.989	ENSHGLG00000011592	TARBP1	94	62.071	Heterocephalus_glaber_female
ENSCPBG00000005587	TARBP1	94	69.697	ENSHGLG00100015169	TARBP1	93	66.484	Heterocephalus_glaber_male
ENSCPBG00000005587	TARBP1	92	40.357	ENSIPUG00000005249	si:dkey-85a20.4	77	43.134	Ictalurus_punctatus
ENSCPBG00000005587	TARBP1	81	74.916	ENSSTOG00000032291	TARBP1	81	74.916	Ictidomys_tridecemlineatus
ENSCPBG00000005587	TARBP1	93	60.228	ENSJJAG00000017840	Tarbp1	93	61.063	Jaculus_jaculus
ENSCPBG00000005587	TARBP1	87	45.191	ENSKMAG00000017546	si:dkey-85a20.4	92	38.797	Kryptolebias_marmoratus
ENSCPBG00000005587	TARBP1	73	47.489	ENSLBEG00000012132	si:dkey-85a20.4	78	43.396	Labrus_bergylta
ENSCPBG00000005587	TARBP1	94	58.926	ENSLACG00000004337	TARBP1	95	51.627	Latimeria_chalumnae
ENSCPBG00000005587	TARBP1	92	50.572	ENSLOCG00000016214	si:dkey-85a20.4	79	50.657	Lepisosteus_oculatus
ENSCPBG00000005587	TARBP1	84	71.875	ENSLAFG00000011394	TARBP1	94	65.413	Loxodonta_africana
ENSCPBG00000005587	TARBP1	99	68.410	ENSMFAG00000041068	TARBP1	91	68.410	Macaca_fascicularis
ENSCPBG00000005587	TARBP1	99	68.519	ENSMMUG00000021703	TARBP1	90	69.324	Macaca_mulatta
ENSCPBG00000005587	TARBP1	99	68.410	ENSMNEG00000045002	TARBP1	94	66.319	Macaca_nemestrina
ENSCPBG00000005587	TARBP1	83	77.258	ENSMLEG00000044182	TARBP1	89	77.258	Mandrillus_leucophaeus
ENSCPBG00000005587	TARBP1	86	44.149	ENSMAMG00000021760	si:dkey-85a20.4	78	44.557	Mastacembelus_armatus
ENSCPBG00000005587	TARBP1	81	51.156	ENSMZEG00005005751	si:dkey-85a20.4	78	45.553	Maylandia_zebra
ENSCPBG00000005587	TARBP1	98	60.985	ENSMAUG00000020968	Tarbp1	94	60.493	Mesocricetus_auratus
ENSCPBG00000005587	TARBP1	99	58.797	ENSMICG00000015280	TARBP1	93	59.262	Microcebus_murinus
ENSCPBG00000005587	TARBP1	98	61.467	ENSMOCG00000004128	Tarbp1	94	61.267	Microtus_ochrogaster
ENSCPBG00000005587	TARBP1	97	40.493	ENSMMOG00000007795	si:dkey-85a20.4	94	40.403	Mola_mola
ENSCPBG00000005587	TARBP1	99	64.997	ENSMODG00000008504	TARBP1	95	64.997	Monodelphis_domestica
ENSCPBG00000005587	TARBP1	86	44.115	ENSMALG00000002916	si:dkey-85a20.4	79	44.505	Monopterus_albus
ENSCPBG00000005587	TARBP1	98	60.786	MGP_CAROLIEiJ_G0031729	Tarbp1	94	60.812	Mus_caroli
ENSCPBG00000005587	TARBP1	98	60.693	ENSMUSG00000090290	Tarbp1	94	60.453	Mus_musculus
ENSCPBG00000005587	TARBP1	98	60.956	MGP_PahariEiJ_G0023326	Tarbp1	94	60.956	Mus_pahari
ENSCPBG00000005587	TARBP1	98	60.826	MGP_SPRETEiJ_G0032846	Tarbp1	94	60.586	Mus_spretus
ENSCPBG00000005587	TARBP1	73	79.899	ENSMPUG00000002802	TARBP1	92	69.251	Mustela_putorius_furo
ENSCPBG00000005587	TARBP1	82	72.756	ENSMLUG00000002414	TARBP1	93	64.280	Myotis_lucifugus
ENSCPBG00000005587	TARBP1	99	68.226	ENSNLEG00000002518	TARBP1	95	66.366	Nomascus_leucogenys
ENSCPBG00000005587	TARBP1	63	76.139	ENSMEUG00000011370	-	61	76.139	Notamacropus_eugenii
ENSCPBG00000005587	TARBP1	69	73.518	ENSOPRG00000013822	TARBP1	61	73.518	Ochotona_princeps
ENSCPBG00000005587	TARBP1	98	62.592	ENSODEG00000005238	TARBP1	94	62.685	Octodon_degus
ENSCPBG00000005587	TARBP1	85	50.588	ENSONIG00000009789	si:dkey-85a20.4	88	52.090	Oreochromis_niloticus
ENSCPBG00000005587	TARBP1	98	64.286	ENSOCUG00000017418	TARBP1	93	64.369	Oryctolagus_cuniculus
ENSCPBG00000005587	TARBP1	95	41.215	ENSORLG00000010529	si:dkey-85a20.4	87	41.657	Oryzias_latipes
ENSCPBG00000005587	TARBP1	95	40.580	ENSORLG00020019264	si:dkey-85a20.4	91	40.435	Oryzias_latipes_hni
ENSCPBG00000005587	TARBP1	95	40.316	ENSORLG00015003276	si:dkey-85a20.4	91	38.752	Oryzias_latipes_hsok
ENSCPBG00000005587	TARBP1	97	65.827	ENSOGAG00000002379	TARBP1	95	67.668	Otolemur_garnettii
ENSCPBG00000005587	TARBP1	88	68.382	ENSOARG00000003434	TARBP1	93	64.869	Ovis_aries
ENSCPBG00000005587	TARBP1	84	77.199	ENSPPAG00000028097	TARBP1	90	77.199	Pan_paniscus
ENSCPBG00000005587	TARBP1	94	69.773	ENSPPRG00000013561	TARBP1	92	70.357	Panthera_pardus
ENSCPBG00000005587	TARBP1	83	70.513	ENSPTIG00000009281	TARBP1	93	70.513	Panthera_tigris_altaica
ENSCPBG00000005587	TARBP1	99	68.553	ENSPTRG00000002124	TARBP1	95	66.474	Pan_troglodytes
ENSCPBG00000005587	TARBP1	99	68.410	ENSPANG00000021933	TARBP1	94	66.450	Papio_anubis
ENSCPBG00000005587	TARBP1	98	42.325	ENSPKIG00000016716	si:dkey-85a20.4	94	42.095	Paramormyrops_kingsleyae
ENSCPBG00000005587	TARBP1	80	89.443	ENSPSIG00000010699	TARBP1	93	89.443	Pelodiscus_sinensis
ENSCPBG00000005587	TARBP1	98	61.122	ENSPEMG00000006888	Tarbp1	93	60.661	Peromyscus_maniculatus_bairdii
ENSCPBG00000005587	TARBP1	89	85.981	ENSPCIG00000029710	TARBP1	92	85.981	Phascolarctos_cinereus
ENSCPBG00000005587	TARBP1	86	44.377	ENSPFOG00000013020	si:dkey-85a20.4	91	44.427	Poecilia_formosa
ENSCPBG00000005587	TARBP1	97	40.671	ENSPLAG00000006044	si:dkey-85a20.4	78	44.769	Poecilia_latipinna
ENSCPBG00000005587	TARBP1	97	40.856	ENSPMEG00000017857	si:dkey-85a20.4	78	44.780	Poecilia_mexicana
ENSCPBG00000005587	TARBP1	85	47.917	ENSPREG00000022753	si:dkey-85a20.4	74	49.026	Poecilia_reticulata
ENSCPBG00000005587	TARBP1	90	68.804	ENSPPYG00000000102	TARBP1	94	68.804	Pongo_abelii
ENSCPBG00000005587	TARBP1	82	89.091	ENSPCAG00000004808	TARBP1	79	89.091	Procavia_capensis
ENSCPBG00000005587	TARBP1	99	62.774	ENSPCOG00000005666	TARBP1	95	62.839	Propithecus_coquereli
ENSCPBG00000005587	TARBP1	98	55.778	ENSPVAG00000014798	TARBP1	94	53.403	Pteropus_vampyrus
ENSCPBG00000005587	TARBP1	80	51.445	ENSPNYG00000019135	si:dkey-85a20.4	77	45.000	Pundamilia_nyererei
ENSCPBG00000005587	TARBP1	98	57.971	ENSRNOG00000053574	Tarbp1	94	57.773	Rattus_norvegicus
ENSCPBG00000005587	TARBP1	90	69.710	ENSRBIG00000043362	TARBP1	89	69.710	Rhinopithecus_bieti
ENSCPBG00000005587	TARBP1	99	68.410	ENSRROG00000029527	TARBP1	94	67.224	Rhinopithecus_roxellana
ENSCPBG00000005587	TARBP1	83	76.768	ENSSBOG00000034503	TARBP1	86	76.768	Saimiri_boliviensis_boliviensis
ENSCPBG00000005587	TARBP1	83	73.810	ENSSHAG00000000013	TARBP1	94	71.249	Sarcophilus_harrisii
ENSCPBG00000005587	TARBP1	76	53.357	ENSSFOG00015002660	si:dkey-85a20.4	91	45.267	Scleropages_formosus
ENSCPBG00000005587	TARBP1	78	53.165	ENSSMAG00000007081	si:dkey-85a20.4	76	45.730	Scophthalmus_maximus
ENSCPBG00000005587	TARBP1	97	39.883	ENSSDUG00000023566	si:dkey-85a20.4	77	43.638	Seriola_dumerili
ENSCPBG00000005587	TARBP1	96	42.810	ENSSLDG00000020200	si:dkey-85a20.4	74	51.935	Seriola_lalandi_dorsalis
ENSCPBG00000005587	TARBP1	86	75.731	ENSSARG00000012207	TARBP1	83	75.731	Sorex_araneus
ENSCPBG00000005587	TARBP1	94	78.707	ENSSPUG00000015364	TARBP1	95	72.277	Sphenodon_punctatus
ENSCPBG00000005587	TARBP1	80	50.716	ENSSPAG00000007213	si:dkey-85a20.4	78	44.763	Stegastes_partitus
ENSCPBG00000005587	TARBP1	97	67.651	ENSSSCG00000010160	TARBP1	93	68.872	Sus_scrofa
ENSCPBG00000005587	TARBP1	78	83.650	ENSTGUG00000010214	TARBP1	88	83.650	Taeniopygia_guttata
ENSCPBG00000005587	TARBP1	82	49.371	ENSTNIG00000016586	si:dkey-85a20.4	93	43.648	Tetraodon_nigroviridis
ENSCPBG00000005587	TARBP1	89	70.160	ENSTTRG00000008707	TARBP1	92	67.626	Tursiops_truncatus
ENSCPBG00000005587	TARBP1	79	78.369	ENSUMAG00000006730	TARBP1	92	69.368	Ursus_maritimus
ENSCPBG00000005587	TARBP1	63	78.616	ENSVPAG00000007665	TARBP1	73	70.459	Vicugna_pacos
ENSCPBG00000005587	TARBP1	82	75.000	ENSVVUG00000007460	TARBP1	92	69.965	Vulpes_vulpes
ENSCPBG00000005587	TARBP1	82	61.950	ENSXETG00000016224	tarbp1	93	57.849	Xenopus_tropicalis
ENSCPBG00000005587	TARBP1	81	48.250	ENSXCOG00000011779	si:dkey-85a20.4	87	48.250	Xiphophorus_couchianus
ENSCPBG00000005587	TARBP1	64	65.957	ENSXMAG00000009600	si:dkey-85a20.4	87	64.407	Xiphophorus_maculatus