EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCPBG00000005858 (Gene tree)
Gene ID: 101939285
Gene Symbol: DKC1
Alias: Cbf5|DKC|NAP57|NOLA4|XAP101|dyskerin
Full Name: dyskerin pseudouridine synthase 1
Gene Type: protein_coding
Species: Chrysemys_picta_bellii
Status: putative
Strand: Plus strand
Length: 140783 bases
Position: chrKK082974.1:240434-381216
Accession: 2890
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCPBP00000007431	TruB_N	PF01509.18	1.5e-21	1	1
ENSCPBP00000007425	TruB_N	PF01509.18	2.1e-21	1	1
ENSCPBP00000007441	TruB_N	PF01509.18	3.3e-21	1	1
ENSCPBP00000007435	TruB_N	PF01509.18	4.8e-20	1	1
ENSCPBP00000007435	PUA	PF01472.20	2.1e-17	1	1
ENSCPBP00000007431	PUA	PF01472.20	2.2e-17	1	1
ENSCPBP00000007425	PUA	PF01472.20	2.5e-17	1	1
ENSCPBP00000007441	PUA	PF01472.20	2.6e-17	1	1
ENSCPBP00000007431	DKCLD	PF08068.12	5.2e-32	1	1
ENSCPBP00000007435	DKCLD	PF08068.12	6.2e-32	1	1
ENSCPBP00000007425	DKCLD	PF08068.12	6.7e-32	1	1
ENSCPBP00000007441	DKCLD	PF08068.12	7.2e-32	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCPBT00000008973	DKC1-202	2463	-	ENSCPBP00000007431	468 (aa)	XP_005301389	UPI000388BDBE
ENSCPBT00000008984	DKC1-204	1831	-	ENSCPBP00000007441	552 (aa)	XP_005301387	UPI000388BEF5
ENSCPBT00000008967	DKC1-201	1774	-	ENSCPBP00000007425	533 (aa)	-	-
ENSCPBT00000008977	DKC1-203	1723	XM_005301331	ENSCPBP00000007435	516 (aa)	XP_005301388	UPI000388D00C

Gene Model

Click here to download ENSCPBG00000005858's gene model file

Pathways

Pathway ID	Pathway Name	Source
cpic03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCPBG00000005858's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCPBG00000005858	DKC1	93	87.045	ENSG00000130826	DKC1	99	92.195	Homo_sapiens
ENSCPBG00000005858	DKC1	88	85.645	ENSAPOG00000007799	dkc1	90	77.944	Acanthochromis_polyacanthus
ENSCPBG00000005858	DKC1	93	86.652	ENSAMEG00000002776	DKC1	87	85.227	Ailuropoda_melanoleuca
ENSCPBG00000005858	DKC1	86	86.318	ENSACIG00000022614	dkc1	82	87.310	Amphilophus_citrinellus
ENSCPBG00000005858	DKC1	88	85.401	ENSAOCG00000013159	dkc1	80	87.374	Amphiprion_ocellaris
ENSCPBG00000005858	DKC1	88	85.401	ENSAPEG00000002284	dkc1	81	87.374	Amphiprion_percula
ENSCPBG00000005858	DKC1	87	83.252	ENSATEG00000013682	dkc1	86	78.876	Anabas_testudineus
ENSCPBG00000005858	DKC1	93	88.383	ENSACAG00000015600	DKC1	80	85.313	Anolis_carolinensis
ENSCPBG00000005858	DKC1	93	87.045	ENSANAG00000022732	DKC1	92	82.664	Aotus_nancymaae
ENSCPBG00000005858	DKC1	85	86.616	ENSACLG00000015605	dkc1	81	86.181	Astatotilapia_calliptera
ENSCPBG00000005858	DKC1	93	82.380	ENSAMXG00000017108	dkc1	88	80.392	Astyanax_mexicanus
ENSCPBG00000005858	DKC1	94	86.395	ENSBTAG00000013045	DKC1	93	82.316	Bos_taurus
ENSCPBG00000005858	DKC1	88	66.019	WBGene00010478	K01G5.5	90	66.165	Caenorhabditis_elegans
ENSCPBG00000005858	DKC1	93	87.185	ENSCJAG00000004210	DKC1	89	85.120	Callithrix_jacchus
ENSCPBG00000005858	DKC1	93	87.788	ENSCAFG00000019620	-	82	88.706	Canis_familiaris
ENSCPBG00000005858	DKC1	91	77.103	ENSCAFG00000009311	-	79	79.208	Canis_familiaris
ENSCPBG00000005858	DKC1	94	74.318	ENSCAFG00020009379	-	86	73.289	Canis_lupus_dingo
ENSCPBG00000005858	DKC1	93	87.788	ENSCAFG00020008918	-	82	88.706	Canis_lupus_dingo
ENSCPBG00000005858	DKC1	94	86.168	ENSCHIG00000017392	DKC1	93	82.105	Capra_hircus
ENSCPBG00000005858	DKC1	89	88.626	ENSTSYG00000007681	DKC1	87	82.789	Carlito_syrichta
ENSCPBG00000005858	DKC1	81	89.947	ENSCAPG00000003342	DKC1	92	86.173	Cavia_aperea
ENSCPBG00000005858	DKC1	93	86.652	ENSCPOG00000008825	DKC1	90	84.449	Cavia_porcellus
ENSCPBG00000005858	DKC1	93	77.500	ENSCCAG00000027418	DKC1	91	73.996	Cebus_capucinus
ENSCPBG00000005858	DKC1	93	87.185	ENSCATG00000033602	DKC1	92	82.875	Cercocebus_atys
ENSCPBG00000005858	DKC1	89	89.286	ENSCLAG00000000720	DKC1	87	85.973	Chinchilla_lanigera
ENSCPBG00000005858	DKC1	93	87.045	ENSCSAG00000006706	DKC1	92	82.875	Chlorocebus_sabaeus
ENSCPBG00000005858	DKC1	84	79.644	ENSCING00000004599	-	77	78.947	Ciona_intestinalis
ENSCPBG00000005858	DKC1	87	77.404	ENSCSAVG00000010047	-	88	78.987	Ciona_savignyi
ENSCPBG00000005858	DKC1	93	87.045	ENSCANG00000027987	DKC1	92	82.875	Colobus_angolensis_palliatus
ENSCPBG00000005858	DKC1	89	87.799	ENSCGRG00001014574	-	88	83.628	Cricetulus_griseus_chok1gshd
ENSCPBG00000005858	DKC1	81	70.449	ENSCGRG00001016789	-	79	70.924	Cricetulus_griseus_chok1gshd
ENSCPBG00000005858	DKC1	81	70.449	ENSCGRG00000014809	-	77	70.924	Cricetulus_griseus_crigri
ENSCPBG00000005858	DKC1	89	87.799	ENSCGRG00000016075	-	88	83.628	Cricetulus_griseus_crigri
ENSCPBG00000005858	DKC1	86	85.856	ENSCSEG00000012633	dkc1	85	86.432	Cynoglossus_semilaevis
ENSCPBG00000005858	DKC1	84	87.342	ENSCVAG00000010155	dkc1	83	82.217	Cyprinodon_variegatus
ENSCPBG00000005858	DKC1	88	85.888	ENSDARG00000016484	dkc1	87	81.027	Danio_rerio
ENSCPBG00000005858	DKC1	97	84.764	ENSDNOG00000004218	DKC1	92	84.355	Dasypus_novemcinctus
ENSCPBG00000005858	DKC1	64	76.000	ENSDORG00000013566	-	100	76.000	Dipodomys_ordii
ENSCPBG00000005858	DKC1	87	72.727	FBgn0259937	Nop60B	89	67.980	Drosophila_melanogaster
ENSCPBG00000005858	DKC1	89	88.278	ENSETEG00000016095	DKC1	96	80.169	Echinops_telfairi
ENSCPBG00000005858	DKC1	68	80.000	ENSEBUG00000015962	dkc1	99	81.229	Eptatretus_burgeri
ENSCPBG00000005858	DKC1	93	87.330	ENSEASG00005007484	DKC1	93	81.443	Equus_asinus_asinus
ENSCPBG00000005858	DKC1	95	85.619	ENSECAG00000023524	DKC1	93	81.443	Equus_caballus
ENSCPBG00000005858	DKC1	85	90.176	ENSEEUG00000003323	DKC1	93	90.152	Erinaceus_europaeus
ENSCPBG00000005858	DKC1	87	86.207	ENSELUG00000014538	dkc1	87	80.537	Esox_lucius
ENSCPBG00000005858	DKC1	87	89.630	ENSFCAG00000006577	DKC1	88	82.637	Felis_catus
ENSCPBG00000005858	DKC1	89	88.863	ENSFALG00000011496	DKC1	93	84.221	Ficedula_albicollis
ENSCPBG00000005858	DKC1	89	87.619	ENSFDAG00000002516	DKC1	90	83.036	Fukomys_damarensis
ENSCPBG00000005858	DKC1	87	84.352	ENSFHEG00000004627	dkc1	91	77.516	Fundulus_heteroclitus
ENSCPBG00000005858	DKC1	84	85.422	ENSGMOG00000017277	dkc1	100	85.422	Gadus_morhua
ENSCPBG00000005858	DKC1	94	89.342	ENSGALG00000005054	DKC1	100	86.127	Gallus_gallus
ENSCPBG00000005858	DKC1	86	84.975	ENSGAFG00000011486	dkc1	74	81.106	Gambusia_affinis
ENSCPBG00000005858	DKC1	85	86.683	ENSGACG00000004373	dkc1	96	90.274	Gasterosteus_aculeatus
ENSCPBG00000005858	DKC1	100	99.031	ENSGAGG00000011330	DKC1	100	99.031	Gopherus_agassizii
ENSCPBG00000005858	DKC1	93	87.045	ENSGGOG00000001045	DKC1	92	82.875	Gorilla_gorilla
ENSCPBG00000005858	DKC1	90	84.086	ENSHBUG00000012436	dkc1	91	78.419	Haplochromis_burtoni
ENSCPBG00000005858	DKC1	89	87.678	ENSHGLG00000000649	DKC1	88	82.637	Heterocephalus_glaber_female
ENSCPBG00000005858	DKC1	89	87.678	ENSHGLG00100001153	DKC1	89	82.637	Heterocephalus_glaber_male
ENSCPBG00000005858	DKC1	90	81.567	ENSHCOG00000021099	dkc1	85	82.407	Hippocampus_comes
ENSCPBG00000005858	DKC1	89	84.135	ENSIPUG00000010309	dkc1	89	79.266	Ictalurus_punctatus
ENSCPBG00000005858	DKC1	90	75.234	ENSSTOG00000011904	-	84	72.527	Ictidomys_tridecemlineatus
ENSCPBG00000005858	DKC1	90	86.417	ENSSTOG00000001074	-	93	83.480	Ictidomys_tridecemlineatus
ENSCPBG00000005858	DKC1	94	78.311	ENSSTOG00000020149	-	91	75.914	Ictidomys_tridecemlineatus
ENSCPBG00000005858	DKC1	64	74.247	ENSJJAG00000010086	-	100	74.247	Jaculus_jaculus
ENSCPBG00000005858	DKC1	86	84.119	ENSKMAG00000008010	dkc1	88	77.978	Kryptolebias_marmoratus
ENSCPBG00000005858	DKC1	86	86.035	ENSLBEG00000019122	dkc1	91	79.464	Labrus_bergylta
ENSCPBG00000005858	DKC1	95	84.459	ENSLACG00000014025	DKC1	91	89.950	Latimeria_chalumnae
ENSCPBG00000005858	DKC1	93	84.138	ENSLOCG00000013713	dkc1	90	82.258	Lepisosteus_oculatus
ENSCPBG00000005858	DKC1	96	82.365	ENSLAFG00000000221	DKC1	96	80.040	Loxodonta_africana
ENSCPBG00000005858	DKC1	89	88.333	ENSMFAG00000032398	DKC1	76	83.664	Macaca_fascicularis
ENSCPBG00000005858	DKC1	93	87.045	ENSMMUG00000005768	DKC1	92	82.875	Macaca_mulatta
ENSCPBG00000005858	DKC1	93	87.045	ENSMNEG00000034503	DKC1	92	82.875	Macaca_nemestrina
ENSCPBG00000005858	DKC1	93	87.045	ENSMLEG00000034422	DKC1	92	82.875	Mandrillus_leucophaeus
ENSCPBG00000005858	DKC1	86	85.856	ENSMAMG00000005427	dkc1	89	87.121	Mastacembelus_armatus
ENSCPBG00000005858	DKC1	90	84.323	ENSMZEG00005014503	dkc1	91	78.632	Maylandia_zebra
ENSCPBG00000005858	DKC1	82	90.649	ENSMGAG00000009238	DKC1	100	86.825	Meleagris_gallopavo
ENSCPBG00000005858	DKC1	64	75.333	ENSMAUG00000016454	-	92	76.703	Mesocricetus_auratus
ENSCPBG00000005858	DKC1	93	86.652	ENSMICG00000038751	-	93	82.833	Microcebus_murinus
ENSCPBG00000005858	DKC1	81	79.070	ENSMICG00000002818	-	99	79.121	Microcebus_murinus
ENSCPBG00000005858	DKC1	60	73.835	ENSMOCG00000001169	-	92	73.835	Microtus_ochrogaster
ENSCPBG00000005858	DKC1	85	87.186	ENSMMOG00000020348	dkc1	87	87.186	Mola_mola
ENSCPBG00000005858	DKC1	87	90.123	ENSMODG00000009243	DKC1	70	90.323	Monodelphis_domestica
ENSCPBG00000005858	DKC1	87	84.597	ENSMALG00000009454	dkc1	94	76.371	Monopterus_albus
ENSCPBG00000005858	DKC1	88	76.235	MGP_CAROLIEiJ_G0033191	Dkc1	84	89.516	Mus_caroli
ENSCPBG00000005858	DKC1	89	86.698	ENSMUSG00000031403	Dkc1	87	84.354	Mus_musculus
ENSCPBG00000005858	DKC1	89	86.698	MGP_PahariEiJ_G0031735	Dkc1	85	84.633	Mus_pahari
ENSCPBG00000005858	DKC1	89	86.698	MGP_SPRETEiJ_G0034351	Dkc1	86	83.900	Mus_spretus
ENSCPBG00000005858	DKC1	89	87.204	ENSMPUG00000016136	DKC1	85	80.860	Mustela_putorius_furo
ENSCPBG00000005858	DKC1	90	83.810	ENSMLUG00000011918	DKC1	91	78.033	Myotis_lucifugus
ENSCPBG00000005858	DKC1	64	75.920	ENSNGAG00000015724	-	100	75.920	Nannospalax_galili
ENSCPBG00000005858	DKC1	85	87.121	ENSNBRG00000005638	dkc1	80	87.563	Neolamprologus_brichardi
ENSCPBG00000005858	DKC1	93	87.045	ENSNLEG00000014323	DKC1	92	82.664	Nomascus_leucogenys
ENSCPBG00000005858	DKC1	91	83.372	ENSMEUG00000001066	DKC1	93	84.161	Notamacropus_eugenii
ENSCPBG00000005858	DKC1	75	84.615	ENSOPRG00000005248	DKC1	70	84.615	Ochotona_princeps
ENSCPBG00000005858	DKC1	64	76.000	ENSODEG00000000549	-	100	76.000	Octodon_degus
ENSCPBG00000005858	DKC1	88	90.268	ENSODEG00000011816	-	89	84.396	Octodon_degus
ENSCPBG00000005858	DKC1	85	87.469	ENSONIG00000013889	dkc1	87	81.306	Oreochromis_niloticus
ENSCPBG00000005858	DKC1	66	63.989	ENSOANG00000022295	-	99	62.465	Ornithorhynchus_anatinus
ENSCPBG00000005858	DKC1	93	87.037	ENSOANG00000008713	-	99	85.655	Ornithorhynchus_anatinus
ENSCPBG00000005858	DKC1	94	87.220	ENSOCUG00000012646	DKC1	92	83.789	Oryctolagus_cuniculus
ENSCPBG00000005858	DKC1	84	86.957	ENSORLG00000018748	dkc1	86	79.186	Oryzias_latipes
ENSCPBG00000005858	DKC1	88	84.746	ENSOMEG00000005786	dkc1	82	85.356	Oryzias_melastigma
ENSCPBG00000005858	DKC1	100	79.213	ENSOGAG00000003399	DKC1	96	77.821	Otolemur_garnettii
ENSCPBG00000005858	DKC1	90	87.173	ENSOARG00000003047	DKC1	89	82.857	Ovis_aries
ENSCPBG00000005858	DKC1	93	87.045	ENSPPAG00000023820	DKC1	92	83.087	Pan_paniscus
ENSCPBG00000005858	DKC1	87	89.630	ENSPPRG00000009104	DKC1	88	82.637	Panthera_pardus
ENSCPBG00000005858	DKC1	85	90.500	ENSPTIG00000017469	DKC1	96	79.541	Panthera_tigris_altaica
ENSCPBG00000005858	DKC1	89	88.333	ENSPTRG00000043416	-	76	83.885	Pan_troglodytes
ENSCPBG00000005858	DKC1	93	87.045	ENSPTRG00000022449	DKC1	92	82.875	Pan_troglodytes
ENSCPBG00000005858	DKC1	93	87.045	ENSPANG00000011978	DKC1	92	82.875	Papio_anubis
ENSCPBG00000005858	DKC1	88	84.951	ENSPKIG00000008443	dkc1	83	87.817	Paramormyrops_kingsleyae
ENSCPBG00000005858	DKC1	79	95.699	ENSPSIG00000013765	DKC1	89	95.699	Pelodiscus_sinensis
ENSCPBG00000005858	DKC1	84	82.995	ENSPMGG00000004097	dkc1	76	80.825	Periophthalmus_magnuspinnatus
ENSCPBG00000005858	DKC1	65	89.080	ENSPEMG00000013348	Dkc1	85	89.080	Peromyscus_maniculatus_bairdii
ENSCPBG00000005858	DKC1	92	87.298	ENSPCIG00000016706	DKC1	76	84.768	Phascolarctos_cinereus
ENSCPBG00000005858	DKC1	86	85.222	ENSPFOG00000018653	dkc1	85	81.524	Poecilia_formosa
ENSCPBG00000005858	DKC1	86	85.222	ENSPLAG00000003272	dkc1	77	81.524	Poecilia_latipinna
ENSCPBG00000005858	DKC1	86	85.222	ENSPMEG00000010413	dkc1	85	81.797	Poecilia_mexicana
ENSCPBG00000005858	DKC1	86	84.975	ENSPREG00000004100	dkc1	77	86.514	Poecilia_reticulata
ENSCPBG00000005858	DKC1	89	88.333	ENSPPYG00000020892	DKC1	89	83.885	Pongo_abelii
ENSCPBG00000005858	DKC1	80	89.037	ENSPCAG00000015034	DKC1	72	89.946	Procavia_capensis
ENSCPBG00000005858	DKC1	93	87.104	ENSPCOG00000026874	DKC1	92	83.087	Propithecus_coquereli
ENSCPBG00000005858	DKC1	88	88.808	ENSPVAG00000009222	DKC1	86	85.517	Pteropus_vampyrus
ENSCPBG00000005858	DKC1	85	86.616	ENSPNYG00000020063	dkc1	90	77.778	Pundamilia_nyererei
ENSCPBG00000005858	DKC1	90	82.670	ENSPNAG00000005780	dkc1	88	78.747	Pygocentrus_nattereri
ENSCPBG00000005858	DKC1	94	81.798	ENSRNOG00000055562	Dkc1	98	75.299	Rattus_norvegicus
ENSCPBG00000005858	DKC1	89	88.333	ENSRBIG00000028457	DKC1	76	83.885	Rhinopithecus_bieti
ENSCPBG00000005858	DKC1	93	87.045	ENSRROG00000044780	DKC1	92	82.875	Rhinopithecus_roxellana
ENSCPBG00000005858	DKC1	82	71.354	YLR175W	-	80	71.354	Saccharomyces_cerevisiae
ENSCPBG00000005858	DKC1	93	87.045	ENSSBOG00000033746	DKC1	91	82.875	Saimiri_boliviensis_boliviensis
ENSCPBG00000005858	DKC1	88	90.049	ENSSHAG00000002463	DKC1	92	87.215	Sarcophilus_harrisii
ENSCPBG00000005858	DKC1	87	86.275	ENSSFOG00015009585	dkc1	90	80.828	Scleropages_formosus
ENSCPBG00000005858	DKC1	89	83.614	ENSSMAG00000002552	dkc1	79	87.724	Scophthalmus_maximus
ENSCPBG00000005858	DKC1	90	84.487	ENSSDUG00000009963	dkc1	83	85.036	Seriola_dumerili
ENSCPBG00000005858	DKC1	84	88.041	ENSSLDG00000019342	dkc1	83	86.935	Seriola_lalandi_dorsalis
ENSCPBG00000005858	DKC1	87	83.990	ENSSARG00000001822	DKC1	90	77.802	Sorex_araneus
ENSCPBG00000005858	DKC1	100	89.015	ENSSPUG00000018907	DKC1	100	88.447	Sphenodon_punctatus
ENSCPBG00000005858	DKC1	85	87.406	ENSSPAG00000002585	dkc1	76	87.406	Stegastes_partitus
ENSCPBG00000005858	DKC1	93	83.223	ENSSSCG00000012823	DKC1	85	89.630	Sus_scrofa
ENSCPBG00000005858	DKC1	89	87.041	ENSTGUG00000006781	DKC1	97	86.966	Taeniopygia_guttata
ENSCPBG00000005858	DKC1	90	83.491	ENSTRUG00000004413	dkc1	85	83.491	Takifugu_rubripes
ENSCPBG00000005858	DKC1	84	70.677	ENSTNIG00000002582	dkc1	86	65.604	Tetraodon_nigroviridis
ENSCPBG00000005858	DKC1	62	85.616	ENSTBEG00000011262	DKC1	86	82.109	Tupaia_belangeri
ENSCPBG00000005858	DKC1	59	91.697	ENSTTRG00000008089	DKC1	55	91.697	Tursiops_truncatus
ENSCPBG00000005858	DKC1	89	87.915	ENSUAMG00000022721	DKC1	85	90.123	Ursus_americanus
ENSCPBG00000005858	DKC1	89	87.678	ENSUMAG00000016899	DKC1	92	91.270	Ursus_maritimus
ENSCPBG00000005858	DKC1	88	87.648	ENSVVUG00000020734	-	71	88.592	Vulpes_vulpes
ENSCPBG00000005858	DKC1	88	73.966	ENSVVUG00000021671	-	74	74.378	Vulpes_vulpes
ENSCPBG00000005858	DKC1	92	85.383	ENSXETG00000032517	DKC1	92	80.810	Xenopus_tropicalis
ENSCPBG00000005858	DKC1	85	86.364	ENSXCOG00000005498	dkc1	85	86.364	Xiphophorus_couchianus
ENSCPBG00000005858	DKC1	86	85.468	ENSXMAG00000004919	dkc1	86	81.755	Xiphophorus_maculatus